TubeTK/Build Instructions

Recommended Build Procedure

• Install CMake
  • http://cmake.org
• Download TubeTK via git
  • git clone git://gitorious.org/tubetk/tubetk.git
• Configure the build using CMake
  • mkdir tubetk-Release
  • cd tubetk-Release
  • ccmake ../tubetk
  • Confirm the following CMake variables
    • TubeTK_USE_SUPERBUILD should be ON
      • If "ON", then cmake will fetch and compile TCLAP, ModuleDescriptionParser, and GenerateCLP from the Slicer3 svn repository.
    • TubeTK_SUPERBUILD_ITK should be ON
      • If "ON", then cmake will fetch and compile ITK as part of the build process.
      • If "OFF", then you will need to specify the path to ITK-Release in the CMake var ITK_DIR
    • TubeTK_USE_QT should be OFF
      • If you have Qt 4.6.3 or greater installed, you can turn it on.
  • Generate the build files by pressing "generate" in cmake
  • Perform initial build using your compiler at the top-level of tubetk-Release
  • Subsequent builds should be initiated in the subdir tubetk-Release/TubeTK-Build to save time

Alternative (more complex) Procedure

These instructions assume expertise in CMake, ITK, and software compilation in general.

Install pre-requisites

ITK

• Build ITKv3.20.0 using the following cmake vars
  • You MUST checkout the v3.20.0 tag of ITK. ITKv4 will not work.

BUILD_SHARED_LIBS = OFF (or ON, but libs are VERY small in ITK because of templates)
ITK_USE_LIBXML2 = ON
ITK_USE_REVIEW = ON
ITK_USE_OPTIMIZED_REGISTRATION_METHODS = ON
ITK_USE_TRANSFORM_IO_FACTORIES = ON
CMAKE_CXX_FLAGS = -fPIC
CMAKE_C_FLAGS = -fPIC

The last two (adding -fPIC to both c and cxx flags) can be ignored if you build with shared libs ON.

Qt 4.6

• Tips for installing Open Source Qt to run with Visual Studio
  1. Open a visual studio command shell.
  2. Go to the Qt source directory and run "configure -platform win32-msvc2005". This will tell Qt to prepare itself for being compiled by the Visual Studio compiler. If you use another version of VS than 2005, replace win32-msvc-2005 with the appropriate one.
  3. Type "nmake" and take a break when it compiles.
  4. Add QMAKESPEC=win32-msvc2005 as a system environment variable and add QTDIR=your_dir into the system path. It is done.
• Tips for installing Qt on Linux
  1. apt-get qt4

VTK (future requirement)

BUILD_SHARED_LIBS = ON
VTK_USE_GUISupport = ON
VTK_USE_QVTK

Optional (rigorous) Compilation Options

• For Linux developers (and Linux dashboard machines) we recommend:
  • CMAKE_CXX_FLAGS:STRING=-W -Wall -Wextra -Wshadow -Wno-system-headers -Wwrite-strings -Wno-deprecated -Woverloaded-virtual
  • CMAKE_C_FLAGS:STRING=-W -Wall -Wextra -Wshadow -Wno-system-headers -Wwrite-strings
• A summary of warning options for gcc and g++ are given at:
  • http://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html
  • http://gcc.gnu.org/onlinedocs/gcc-4.3.4/gcc/C_002b_002b-Dialect-Options.html

References

• Superbuild and EXTERNAL_PROJECTS
  • Dave Cole's article in the October Kitware Source [1]