ITK Release 4/Microscopy/Reference Applications: Difference between revisions

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* Cellular tracking (across time)
* Cellular tracking (across time)
* Lineage reconstruction (cell tracking + cell division detection)
* Neuron tracing
* Neuron tracing
* Gene expression mapping (3D+t)
* Gene expression mapping (3D+t)
* High throughput processing: (thousands of images)
* Image Annotation
* Brain mapping (reverse engineering connections)(fly, mouse)
* Image deconvolution


= Software Applications =
== GoFigure ==
* https://wiki.med.harvard.edu/SysBio/Megason/GoFigure
== Farsight Tookit ==
* http://www.farsight-toolkit.org/wiki/FARSIGHT_Toolkit
== V3D ==


= Software Applications =
[[Image:V3D-Fly-Brain-Screenshot.png‎|right|100px]]
 
* http://penglab.janelia.org/proj/v3d/
 
 
== Slicer ==


* GoFigure
* http://www.slicer.org/
** https://wiki.med.harvard.edu/SysBio/Megason/GoFigure
* Farsight Tookit
** http://www.farsight-toolkit.org/wiki/FARSIGHT_Toolkit
* V3D
** http://penglab.janelia.org/proj/v3d/V3D/About_V3D.html
* Slicer
** http://www.slicer.org/

Latest revision as of 17:12, 3 August 2010

Microscopy Reference Applications

Application Domains

  • Cellular tracking (across time)
  • Lineage reconstruction (cell tracking + cell division detection)
  • Neuron tracing
  • Gene expression mapping (3D+t)
  • High throughput processing: (thousands of images)
  • Image Annotation
  • Brain mapping (reverse engineering connections)(fly, mouse)
  • Image deconvolution

Software Applications

GoFigure

Farsight Tookit


V3D

V3D-Fly-Brain-Screenshot.png


Slicer

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