Index: Code/IO/itkIOCommon.h
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkIOCommon.h,v
retrieving revision 1.27
diff -u -r1.27 itkIOCommon.h
--- Code/IO/itkIOCommon.h   27 May 2008 11:41:08 -0000  1.27
+++ Code/IO/itkIOCommon.h   29 Sep 2009 10:32:09 -0000
@@ -110,6 +110,7 @@
 #endif
 extern const char *const ITK_Origin;
 extern const char *const ITK_Spacing;
+extern const char *const ITK_Direction;
 extern const char *const ITK_FileOriginator;
 extern const char *const ITK_OriginationDate;
 extern const char *const ITK_PatientID;
Index: Code/IO/itkIOCommon.cxx
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkIOCommon.cxx,v
retrieving revision 1.29
diff -u -r1.29 itkIOCommon.cxx
--- Code/IO/itkIOCommon.cxx	5 Apr 2009 10:56:48 -0000	1.29
+++ Code/IO/itkIOCommon.cxx	29 Sep 2009 10:32:09 -0000
@@ -33,6 +33,7 @@
 #endif
 const char *const ITK_Origin = "ITK_Origin";
 const char *const ITK_Spacing = "ITK_Spacing";
+const char *const ITK_Direction = "ITK_Direction";
 const char *const ITK_FileOriginator = "ITK_FileOriginator";
 const char *const ITK_OriginationDate = "ITK_OriginationDate";
 const char *const ITK_PatientID = "ITK_PatientID";
Index: Code/IO/itkImageSeriesWriter.txx
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkImageSeriesWriter.txx,v
retrieving revision 1.33
diff -u -r1.33 itkImageSeriesWriter.txx
--- Code/IO/itkImageSeriesWriter.txx	11 May 2009 19:26:54 -0000	1.33
+++ Code/IO/itkImageSeriesWriter.txx	29 Sep 2009 10:32:09 -0000
@@ -362,6 +362,17 @@
         EncapsulateMetaData< DoubleArrayType >( dictionary, ITK_Spacing, spacingArray );
         EncapsulateMetaData<  unsigned int   >( dictionary, ITK_NumberOfDimensions, inputImageDimension );
 
+        typename InputImageType::DirectionType direction2 = inputImage->GetDirection();
+        typedef Matrix< double, inputImageDimension, inputImageDimension> DoubleMatrixType;
+        DoubleMatrixType directionMatrix;
+        for( unsigned int i = 0; i < inputImageDimension; i++ )
+          {
+          for( unsigned int j = 0; j < inputImageDimension; j++ )
+            {
+            directionMatrix[i][j]  = direction2[i][j];
+            }
+          }
+        EncapsulateMetaData< DoubleMatrixType >( dictionary, ITK_Direction, directionMatrix );
         }
       }
     
Index: Code/IO/itkGDCMImageIO.cxx
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkGDCMImageIO.cxx,v
retrieving revision 1.167
diff -u -r1.167 itkGDCMImageIO.cxx
--- Code/IO/itkGDCMImageIO.cxx  22 Sep 2009 20:00:07 -0000  1.167
+++ Code/IO/itkGDCMImageIO.cxx  29 Sep 2009 10:32:09 -0000
@@ -1418,6 +1418,15 @@
         m_Spacing[1] = spacingArray[1];
         m_Spacing[2] = spacingArray[2];
         }
+      else if( key == ITK_Direction )
+        {
+        typedef Matrix< double > DoubleMatrixType;
+        DoubleMatrixType directionMatrix;
+        ExposeMetaData< DoubleMatrixType >( dict, key, directionMatrix );
+        for(int i = 0; i<3; i++)
+            for(int j = 0; j<3; j++)
+                m_Direction[i][j]=directionMatrix[i][j];
+        }
       else
         {
         itkDebugMacro(
@@ -1959,6 +1959,15 @@
         m_Spacing[1] = spacingArray[1];
         m_Spacing[2] = spacingArray[2];
         }
+      else if( key == ITK_Direction )
+        {
+        typedef Matrix< double > DoubleMatrixType;
+        DoubleMatrixType directionMatrix;
+        ExposeMetaData< DoubleMatrixType >( dict, key, directionMatrix );
+        for(int i = 0; i<3; i++)
+            for(int j = 0; j<3; j++)
+                m_Direction[i][j]=directionMatrix[i][j];
+        }
       else
         {
         itkDebugMacro(

Index: Code/IO/itkIOCommon.h
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkIOCommon.h,v
retrieving revision 1.27
diff -u -r1.27 itkIOCommon.h
--- Code/IO/itkIOCommon.h   27 May 2008 11:41:08 -0000  1.27
+++ Code/IO/itkIOCommon.h   29 Sep 2009 10:32:09 -0000
@@ -110,6 +110,7 @@
 #endif
 extern const char *const ITK_Origin;
 extern const char *const ITK_Spacing;
+extern const char *const ITK_Direction;
 extern const char *const ITK_FileOriginator;
 extern const char *const ITK_OriginationDate;
 extern const char *const ITK_PatientID;
Index: Code/IO/itkIOCommon.cxx
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkIOCommon.cxx,v
retrieving revision 1.29
diff -u -r1.29 itkIOCommon.cxx
--- Code/IO/itkIOCommon.cxx	5 Apr 2009 10:56:48 -0000	1.29
+++ Code/IO/itkIOCommon.cxx	29 Sep 2009 10:32:09 -0000
@@ -33,6 +33,7 @@
 #endif
 const char *const ITK_Origin = "ITK_Origin";
 const char *const ITK_Spacing = "ITK_Spacing";
+const char *const ITK_Direction = "ITK_Direction";
 const char *const ITK_FileOriginator = "ITK_FileOriginator";
 const char *const ITK_OriginationDate = "ITK_OriginationDate";
 const char *const ITK_PatientID = "ITK_PatientID";
Index: Code/IO/itkImageSeriesWriter.txx
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkImageSeriesWriter.txx,v
retrieving revision 1.33
diff -u -r1.33 itkImageSeriesWriter.txx
--- Code/IO/itkImageSeriesWriter.txx	11 May 2009 19:26:54 -0000	1.33
+++ Code/IO/itkImageSeriesWriter.txx	29 Sep 2009 10:32:09 -0000
@@ -362,6 +362,17 @@
         EncapsulateMetaData< DoubleArrayType >( dictionary, ITK_Spacing, spacingArray );
         EncapsulateMetaData<  unsigned int   >( dictionary, ITK_NumberOfDimensions, inputImageDimension );
 
+        typename InputImageType::DirectionType direction2 = inputImage->GetDirection();
+        typedef Matrix< double, inputImageDimension, inputImageDimension> DoubleMatrixType;
+        DoubleMatrixType directionMatrix;
+        for( unsigned int i = 0; i < inputImageDimension; i++ )
+          {
+          for( unsigned int j = 0; j < inputImageDimension; j++ )
+            {
+            directionMatrix[i][j]  = direction2[i][j];
+            }
+          }
+        EncapsulateMetaData< DoubleMatrixType >( dictionary, ITK_Direction, directionMatrix );
         }
       }
     
Index: Code/IO/itkGDCMImageIO.cxx
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkGDCMImageIO.cxx,v
retrieving revision 1.167
diff -u -r1.167 itkGDCMImageIO.cxx
--- Code/IO/itkGDCMImageIO.cxx  22 Sep 2009 20:00:07 -0000  1.167
+++ Code/IO/itkGDCMImageIO.cxx  29 Sep 2009 10:32:09 -0000
@@ -1418,6 +1418,15 @@
         m_Spacing[1] = spacingArray[1];
         m_Spacing[2] = spacingArray[2];
         }
+      else if( key == ITK_Direction )
+        {
+        typedef Matrix< double > DoubleMatrixType;
+        DoubleMatrixType directionMatrix;
+        ExposeMetaData< DoubleMatrixType >( dict, key, directionMatrix );
+        for(int i = 0; i<3; i++)
+            for(int j = 0; j<3; j++)
+                m_Direction[j][i]=directionMatrix[i][j];
+        }
       else
         {
         itkDebugMacro(
@@ -1959,6 +1959,15 @@
         m_Spacing[1] = spacingArray[1];
         m_Spacing[2] = spacingArray[2];
         }
+      else if( key == ITK_Direction )
+        {
+        typedef Matrix< double > DoubleMatrixType;
+        DoubleMatrixType directionMatrix;
+        ExposeMetaData< DoubleMatrixType >( dict, key, directionMatrix );
+        for(int i = 0; i<3; i++)
+            for(int j = 0; j<3; j++)
+                m_Direction[j][i]=directionMatrix[i][j];
+        }
       else
         {
         itkDebugMacro(

Index: Code/IO/itkGDCMImageIO.cxx
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkGDCMImageIO.cxx,v
retrieving revision 1.169
diff -u -r1.169 itkGDCMImageIO.cxx
--- Code/IO/itkGDCMImageIO.cxx	3 Dec 2009 13:56:48 -0000	1.169
+++ Code/IO/itkGDCMImageIO.cxx	3 Dec 2009 14:06:32 -0000
@@ -3,8 +3,8 @@
   Program:   Insight Segmentation & Registration Toolkit
   Module:    $RCSfile: itkGDCMImageIO.cxx,v $
   Language:  C++
-  Date:      $Date: 2009-12-03 13:56:48 $
-  Version:   $Revision: 1.169 $
+  Date:      $Date: 2009-12-03 11:30:50 $
+  Version:   $Revision: 1.168 $
 
   Copyright (c) Insight Software Consortium. All rights reserved.
   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
@@ -1399,9 +1399,6 @@
         m_GlobalNumberOfDimensions = numberOfDimensions;
         m_Origin.resize( m_GlobalNumberOfDimensions );
         m_Spacing.resize( m_GlobalNumberOfDimensions );
-        m_Direction.resize( m_GlobalNumberOfDimensions );
-        for(unsigned int i = 0; i<m_GlobalNumberOfDimensions; i++)
-          m_Direction[i].resize( m_GlobalNumberOfDimensions );
         }
       else if( key == ITK_Origin )
         {
@@ -1421,15 +1418,6 @@
         m_Spacing[1] = spacingArray[1];
         m_Spacing[2] = spacingArray[2];
         }
-      else if( key == ITK_ZDirection )
-        {
-        typedef Matrix< double > DoubleMatrixType;
-        DoubleMatrixType directionMatrix;
-        ExposeMetaData< DoubleMatrixType >( dict, key, directionMatrix );
-        for(int i = 0; i<3; i++)
-            for(int j = 0; j<3; j++)
-                m_Direction[i][j]=directionMatrix[i][j];
-        }
       else
         {
         itkDebugMacro(
@@ -1952,9 +1940,6 @@
         m_GlobalNumberOfDimensions = numberOfDimensions;
         m_Origin.resize( m_GlobalNumberOfDimensions );
         m_Spacing.resize( m_GlobalNumberOfDimensions );
-        m_Direction.resize( m_GlobalNumberOfDimensions );
-        for(unsigned int i = 0; i<m_GlobalNumberOfDimensions; i++)
-          m_Direction[i].resize( m_GlobalNumberOfDimensions );
         }
       else if( key == ITK_Origin )
         {
@@ -1974,15 +1959,6 @@
         m_Spacing[1] = spacingArray[1];
         m_Spacing[2] = spacingArray[2];
         }
-      else if( key == ITK_XDirection )
-        {
-        typedef Matrix< double > DoubleMatrixType;
-        DoubleMatrixType directionMatrix;
-        ExposeMetaData< DoubleMatrixType >( dict, key, directionMatrix );
-        for(int i = 0; i<3; i++)
-            for(int j = 0; j<3; j++)
-                m_Direction[i][j]=directionMatrix[i][j];
-        }
       else
         {
         itkDebugMacro(
Index: Code/IO/itkIOCommon.cxx
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkIOCommon.cxx,v
retrieving revision 1.31
diff -u -r1.31 itkIOCommon.cxx
--- Code/IO/itkIOCommon.cxx	3 Dec 2009 13:56:50 -0000	1.31
+++ Code/IO/itkIOCommon.cxx	3 Dec 2009 14:06:32 -0000
@@ -3,8 +3,8 @@
   Program:   Insight Segmentation & Registration Toolkit
   Module:    $RCSfile: itkIOCommon.cxx,v $
   Language:  C++
-  Date:      $Date: 2009-12-03 13:56:50 $
-  Version:   $Revision: 1.31 $
+  Date:      $Date: 2009-12-03 11:30:50 $
+  Version:   $Revision: 1.30 $
 
   Copyright (c) Insight Software Consortium. All rights reserved.
   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
@@ -33,7 +33,6 @@
 #endif
 const char *const ITK_Origin = "ITK_Origin";
 const char *const ITK_Spacing = "ITK_Spacing";
-const char *const ITK_ZDirection = "ITK_ZDirection";
 const char *const ITK_FileOriginator = "ITK_FileOriginator";
 const char *const ITK_OriginationDate = "ITK_OriginationDate";
 const char *const ITK_PatientID = "ITK_PatientID";
Index: Code/IO/itkIOCommon.h
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkIOCommon.h,v
retrieving revision 1.29
diff -u -r1.29 itkIOCommon.h
--- Code/IO/itkIOCommon.h	3 Dec 2009 13:56:53 -0000	1.29
+++ Code/IO/itkIOCommon.h	3 Dec 2009 14:06:32 -0000
@@ -3,8 +3,8 @@
   Program:   Insight Segmentation & Registration Toolkit
   Module:    $RCSfile: itkIOCommon.h,v $
   Language:  C++
-  Date:      $Date: 2009-12-03 13:56:53 $
-  Version:   $Revision: 1.29 $
+  Date:      $Date: 2009-12-03 11:30:50 $
+  Version:   $Revision: 1.28 $
 
   Copyright (c) Insight Software Consortium. All rights reserved.
   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
@@ -110,7 +110,6 @@
 #endif
 extern const char *const ITK_Origin;
 extern const char *const ITK_Spacing;
-extern const char *const ITK_ZDirection;
 extern const char *const ITK_FileOriginator;
 extern const char *const ITK_OriginationDate;
 extern const char *const ITK_PatientID;
Index: Code/IO/itkImageIOBase.cxx
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkImageIOBase.cxx,v
retrieving revision 1.87
diff -u -r1.87 itkImageIOBase.cxx
--- Code/IO/itkImageIOBase.cxx	3 Dec 2009 13:56:54 -0000	1.87
+++ Code/IO/itkImageIOBase.cxx	3 Dec 2009 14:06:32 -0000
@@ -3,8 +3,8 @@
   Program:   Insight Segmentation & Registration Toolkit
   Module:    $RCSfile: itkImageIOBase.cxx,v $
   Language:  C++
-  Date:      $Date: 2009-12-03 13:56:54 $
-  Version:   $Revision: 1.87 $
+  Date:      $Date: 2009-11-03 12:25:10 $
+  Version:   $Revision: 1.86 $
 
   Copyright (c) Insight Software Consortium. All rights reserved.
   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
@@ -172,8 +172,7 @@
     }
   this->Modified();
   std::vector<double> v;
-  //v.resize(m_Direction.size());
-  v.resize(direction.size());
+  v.resize(m_Direction.size());
   for (unsigned int j=0; j < v.size(); j++)
     {
     v[j] = direction[j];
Index: Code/IO/itkImageSeriesWriter.txx
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkImageSeriesWriter.txx,v
retrieving revision 1.35
diff -u -r1.35 itkImageSeriesWriter.txx
--- Code/IO/itkImageSeriesWriter.txx	3 Dec 2009 13:56:56 -0000	1.35
+++ Code/IO/itkImageSeriesWriter.txx	3 Dec 2009 14:06:32 -0000
@@ -3,8 +3,8 @@
   Program:   Insight Segmentation & Registration Toolkit
   Module:    $RCSfile: itkImageSeriesWriter.txx,v $
   Language:  C++
-  Date:      $Date: 2009-12-03 13:56:56 $
-  Version:   $Revision: 1.35 $
+  Date:      $Date: 2009-12-03 11:30:50 $
+  Version:   $Revision: 1.34 $
 
   Copyright (c) Insight Software Consortium. All rights reserved.
   See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
@@ -362,17 +362,6 @@
         EncapsulateMetaData< DoubleArrayType >( dictionary, ITK_Spacing, spacingArray );
         EncapsulateMetaData<  unsigned int   >( dictionary, ITK_NumberOfDimensions, inputImageDimension );
 
-        typename InputImageType::DirectionType direction2 = inputImage->GetDirection();
-        typedef Matrix< double, inputImageDimension, inputImageDimension> DoubleMatrixType;
-        DoubleMatrixType directionMatrix;
-        for( unsigned int i = 0; i < inputImageDimension; i++ )
-          {
-          for( unsigned int j = 0; j < inputImageDimension; j++ )
-            {
-            directionMatrix[i][j]  = direction2[i][j];
-            }
-          }
-        EncapsulateMetaData< DoubleMatrixType >( dictionary, ITK_ZDirection, directionMatrix );
         }
       }
     

Index: Code/IO/itkGDCMImageIO.cxx
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkGDCMImageIO.cxx,v
retrieving revision 1.170
diff -u -r1.170 itkGDCMImageIO.cxx
--- Code/IO/itkGDCMImageIO.cxx	3 Dec 2009 14:09:13 -0000	1.170
+++ Code/IO/itkGDCMImageIO.cxx	20 Apr 2010 10:12:44 -0000
@@ -1399,6 +1399,9 @@
         m_GlobalNumberOfDimensions = numberOfDimensions;
         m_Origin.resize( m_GlobalNumberOfDimensions );
         m_Spacing.resize( m_GlobalNumberOfDimensions );
+        for (unsigned int i = 0 ; i < m_GlobalNumberOfDimensions; i++)
+          m_Direction[i].resize( m_GlobalNumberOfDimensions );
+
         }
       else if( key == ITK_Origin )
         {
@@ -1418,6 +1421,15 @@
         m_Spacing[1] = spacingArray[1];
         m_Spacing[2] = spacingArray[2];
         }
+      else if( key == ITK_ZDirection )
+        {
+        typedef Matrix< double > DoubleMatrixType;
+        DoubleMatrixType directionMatrix;
+        ExposeMetaData< DoubleMatrixType >( dict, key, directionMatrix );
+        for(int i = 0; i<3; i++)
+            for(int j = 0; j<3; j++)
+                m_Direction[i][j]=directionMatrix[i][j];
+        }
       else
         {
         itkDebugMacro(
@@ -1940,6 +1952,9 @@
         m_GlobalNumberOfDimensions = numberOfDimensions;
         m_Origin.resize( m_GlobalNumberOfDimensions );
         m_Spacing.resize( m_GlobalNumberOfDimensions );
+        m_Direction.resize(m_GlobalNumberOfDimensions );
+        for (unsigned int i = 0 ; i < m_GlobalNumberOfDimensions; i++) 
+	  m_Direction[i].resize( m_GlobalNumberOfDimensions );
         }
       else if( key == ITK_Origin )
         {
@@ -1959,6 +1974,16 @@
         m_Spacing[1] = spacingArray[1];
         m_Spacing[2] = spacingArray[2];
         }
+      else if( key == ITK_ZDirection )
+        {
+        typedef Matrix< double > DoubleMatrixType;
+        DoubleMatrixType directionMatrix;
+        ExposeMetaData< DoubleMatrixType >( dict, key, directionMatrix );
+        for(int i = 0; i<3; i++)
+            for(int j = 0; j<3; j++)
+                m_Direction[i][j]=directionMatrix[i][j];
+   
+        }
       else
         {
         itkDebugMacro(
Index: Code/IO/itkIOCommon.cxx
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkIOCommon.cxx,v
retrieving revision 1.32
diff -u -r1.32 itkIOCommon.cxx
--- Code/IO/itkIOCommon.cxx	3 Dec 2009 14:09:13 -0000	1.32
+++ Code/IO/itkIOCommon.cxx	20 Apr 2010 10:12:44 -0000
@@ -33,6 +33,7 @@
 #endif
 const char *const ITK_Origin = "ITK_Origin";
 const char *const ITK_Spacing = "ITK_Spacing";
+const char *const ITK_ZDirection = "ITK_ZDirection";
 const char *const ITK_FileOriginator = "ITK_FileOriginator";
 const char *const ITK_OriginationDate = "ITK_OriginationDate";
 const char *const ITK_PatientID = "ITK_PatientID";
Index: Code/IO/itkIOCommon.h
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkIOCommon.h,v
retrieving revision 1.30
diff -u -r1.30 itkIOCommon.h
--- Code/IO/itkIOCommon.h	3 Dec 2009 14:09:14 -0000	1.30
+++ Code/IO/itkIOCommon.h	20 Apr 2010 10:12:44 -0000
@@ -110,6 +110,7 @@
 #endif
 extern const char *const ITK_Origin;
 extern const char *const ITK_Spacing;
+extern const char *const ITK_ZDirection;
 extern const char *const ITK_FileOriginator;
 extern const char *const ITK_OriginationDate;
 extern const char *const ITK_PatientID;
Index: Code/IO/itkImageSeriesWriter.txx
===================================================================
RCS file: /cvsroot/Insight/Insight/Code/IO/itkImageSeriesWriter.txx,v
retrieving revision 1.36
diff -u -r1.36 itkImageSeriesWriter.txx
--- Code/IO/itkImageSeriesWriter.txx	3 Dec 2009 14:09:14 -0000	1.36
+++ Code/IO/itkImageSeriesWriter.txx	20 Apr 2010 10:12:44 -0000
@@ -362,6 +362,17 @@
         EncapsulateMetaData< DoubleArrayType >( dictionary, ITK_Spacing, spacingArray );
         EncapsulateMetaData<  unsigned int   >( dictionary, ITK_NumberOfDimensions, inputImageDimension );
 
+        typename InputImageType::DirectionType direction2 = inputImage->GetDirection();
+        typedef Matrix< double, inputImageDimension, inputImageDimension> DoubleMatrixType;
+        DoubleMatrixType directionMatrix;
+        for( unsigned int i = 0; i < inputImageDimension; i++ )
+          {
+          for( unsigned int j = 0; j < inputImageDimension; j++ )
+            {
+            directionMatrix[j][i]  = direction2[i][j];
+            }
+          }
+        EncapsulateMetaData< DoubleMatrixType >( dictionary, ITK_ZDirection, directionMatrix );
         }
       }