[Tubetk-developers] runtime error

Wei Liu weiliu620 at gmail.com
Sun Feb 2 19:58:05 EST 2014 

Stephen,

My system does have qmake at /usr/bin, as shown by 'which qmake'. When
running ccmake the first time for TubeTK, ccmake found this system qmake.
Once I choose to build Slicer extension and give the Slicer-build
directory, I got the following error:

 CMake Error at
/home/sci/weiliu/projects/Slicer-SuperBuild-Rel/Slicer-build/SlicerConfig.cmake:547
(message):
   Variable QT_QMAKE_EXECUTABLE defined prior calling 'find_package(Slicer)'
   does NOT match value used to configure Slicer.  It probably means that a
   different QT_QMAKE_EXECUTABLE has been used to configure this project and
   Slicer.

   QT_QMAKE_EXECUTABLE=/usr/bin/qmake



 Slicer_QT_QMAKE_EXECUTABLE=/home/sci/weiliu/QtSDK/Desktop/Qt/474/gcc/bin/qmake
 Call Stack (most recent call first):

 /home/sci/weiliu/projects/Slicer-SuperBuild-Rel/Slicer-build/SlicerConfig.cmake:565
(slicer_config_set_ep)
   CMakeLists.txt:175 (find_package)




To get rid of this error, I have to manually set the qmake to the one in
the QtSDK that I downloaded from Slicer website.

Wei


On Sun, Feb 2, 2014 at 5:47 PM, Stephen Aylward <stephen.aylward at kitware.com
> wrote:

> Ah.  It shouldn't be asking for qmake.  It should get that from the slicer
> build info.
>
> Perhaps it is mixing a system qt with the version used to build slicer.
> We have tested that in the past,  but it might not be working now.
>
> If you type "which qmake" does it return a path to another qmake?
>
> S
> --
> Sent via phone.  Please excuse the brevity and typos.
>
> --
> Stephen R. Aylward, Ph.D.
> Senior Director of Operations
> Kitware, North Carolina
> On Feb 2, 2014 6:42 PM, "Wei Liu" <weiliu620 at gmail.com> wrote:
>
>> Christopher,
>>
>> Here is what I found under the QT SDK directory that I downloaded from
>> Slicer website:
>>
>> weiliu at wukong:~/QtSDK/Desktop/Qt/474/gcc/lib> ll libQtWebKit.*
>> -rw-r--r-- 1 weiliu sci      934 Jan 22 10:29 libQtWebKit.la
>> lrwxrwxrwx 1 weiliu sci       20 Jan 22 10:29 libQtWebKit.so ->
>> libQtWebKit.so.4.7.4
>> lrwxrwxrwx 1 weiliu sci       20 Jan 22 10:29 libQtWebKit.so.4 ->
>> libQtWebKit.so.4.7.4
>> lrwxrwxrwx 1 weiliu sci       20 Jan 22 10:29 libQtWebKit.so.4.7 ->
>> libQtWebKit.so.4.7.4
>> -rwxr-xr-x 1 weiliu sci 22791816 Jan 22 10:29 libQtWebKit.so.4.7.4
>>
>> In the ccmake of TubeTK, if I just set Slicer build directory in order to
>> build Slicer extension, I got error that says qmake should be same with the
>> one that is used to build Slicer. So I point the qmake to the one under QT
>> SDK. The configuration then goes through, so I suppose the setting is
>> correct.
>>
>> Wei
>>
>>
>> On Sun, Feb 2, 2014 at 4:32 PM, Christopher Mullins <
>> christopher.mullins at kitware.com> wrote:
>>
>>> Can you confirm that you built or installed Qt with webkit?  You should
>>> have the file libQtWebKit.so somewhere in the build tree or installation
>>> directory.  Also make sure your QT_QMAKE_EXECUTABLE is set correctly.
>>>
>>>
>>> On Sun, Feb 2, 2014 at 5:40 PM, Wei Liu <weiliu620 at gmail.com> wrote:
>>>
>>>> Stephen,
>>>>
>>>> I did what you suggested. However, after step 3) and choose 'configure'
>>>> in ccmake, I got the same error message that I reported to you in a
>>>> different email thread.  The error is:
>>>>
>>>>  CMake Error at
>>>> /home/sci/weiliu/packages/Slicer/CMake/SlicerBlockFindQtAndCheckVersion.cmake:43
>>>> (message):
>>>>    error: Missing Qt module QTWEBKIT
>>>>  Call Stack (most recent call first):
>>>>
>>>>  /home/sci/weiliu/packages/Slicer/CMake/SlicerBlockFindQtAndCheckVersion.cmake:72
>>>> (__SlicerBlockFindQtAndCheckVersion_find_qt)
>>>>
>>>>  /home/sci/weiliu/projects/Slicer-SuperBuild-Rel/Slicer-build/SlicerConfig.cmake:760
>>>> (include)
>>>>    CMakeLists.txt:175 (find_package)
>>>>
>>>>
>>>> I've made sure that I start from an empty build directory. By the way,
>>>> my Slicer build is a good one. I used a customized QT SDK (version 474)
>>>> from [1].
>>>>
>>>> [1]
>>>> http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Build_Instructions/Prerequisites/Qt#Download_Qt:_Source_and_Binaries
>>>>
>>>> Wei
>>>>
>>>>
>>>> On Sun, Feb 2, 2014 at 1:40 PM, Stephen Aylward <
>>>> stephen.aylward at kitware.com> wrote:
>>>>
>>>>> Only options to change are
>>>>>
>>>>> 1) TubeTK_BUILD_SLICER_EXTENSION = ON
>>>>> 2) TubeTK_USE_SLICER = ON
>>>>>
>>>>> Then type [c] to configure.  This will produce an error message if
>>>>> Slicer isn't automatically found...so
>>>>>
>>>>> 3) Slicer_DIR = <YourPathToSlicerBuild>/Slicer-build
>>>>> -- Yes, point it to the Slicer-build subdir that is within the
>>>>> top-level directory in which Slicer was built.
>>>>>
>>>>> Do not change any other options.
>>>>>
>>>>> You should do this in an empty build directory.  There are likely to
>>>>> be problems if you try to switch a current build from being a
>>>>> stand-alone build to being a Slicer-dependent build.
>>>>>
>>>>> s
>>>>>
>>>>>
>>>>> On Sun, Feb 2, 2014 at 2:49 PM, Wei Liu <weiliu620 at gmail.com> wrote:
>>>>> > Thanks, Matt and Stephen. I checked the CmakeOutput.log file under
>>>>> VTK-build
>>>>> > and didn't find any errors. Is that the best way to check build logs?
>>>>> >
>>>>> > I do have a recent Slicer build that includes VTK. Let me try to
>>>>> point
>>>>> > TubeTK to it and see what happens.
>>>>> >
>>>>> > Wei
>>>>> >
>>>>> >
>>>>> > On Sun, Feb 2, 2014 at 12:34 PM, Stephen Aylward
>>>>> > <stephen.aylward at kitware.com> wrote:
>>>>> >>
>>>>> >> Also, Ricardo is building it on opensuse.   It seems to be failing
>>>>> on the
>>>>> >> vtk build.  Perhaps try building vtk on its own via vtk.org or
>>>>> build slicer
>>>>> >> and point tubetk to it...see slicer.org
>>>>> >>
>>>>> >> S
>>>>> >>
>>>>> >> --
>>>>> >> Sent via phone.  Please excuse the brevity and typos.
>>>>> >>
>>>>> >> --
>>>>> >> Stephen R. Aylward, Ph.D.
>>>>> >> Senior Director of Operations
>>>>> >> Kitware, North Carolina
>>>>> >>
>>>>> >> On Feb 2, 2014 2:31 PM, "Matt McCormick" <
>>>>> matt.mccormick at kitware.com>
>>>>> >> wrote:
>>>>> >>>
>>>>> >>> Hi Wei,
>>>>> >>>
>>>>> >>> Builds reporting to the dashboard should be reproducible (there is
>>>>> >>> Debian Stable and Ubuntu 12.04 and 13.04 reporting):
>>>>> >>>
>>>>> >>>   http://open.cdash.org/index.php?project=TubeTK
>>>>> >>>
>>>>> >>> If further help is needed, we can give personalized attention with
>>>>> a
>>>>> >>> support contract:
>>>>> >>>
>>>>> >>>   http://www.kitware.com/products/support.html
>>>>> >>>
>>>>> >>> Thanks,
>>>>> >>> Matt
>>>>> >>>
>>>>> >>> On Sun, Feb 2, 2014 at 11:51 AM, Wei Liu <weiliu620 at gmail.com>
>>>>> wrote:
>>>>> >>> > Oops, I sent previous email before finishing it.
>>>>> >>> >
>>>>> >>> > Yes Matt, I meant TubeTK_USE_VTK.  So, I started a clean build,
>>>>> with
>>>>> >>> > all
>>>>> >>> > cmake options set to default (the UtbeT_USE_VTK = ON). Now I have
>>>>> >>> > different
>>>>> >>> > errors:
>>>>> >>> >
>>>>> >>> > ./CropImage: symbol lookup error:
>>>>> >>> >
>>>>> >>> >
>>>>> /home/sci/weiliu/packages/TubeTK-Release/VTK-build/bin/libvtkInfovis.so.5.10:
>>>>> >>> > undefined symbol: _ZTI8vtkArray
>>>>> >>> >
>>>>> >>> > I don't remember the exact difference between this build and the
>>>>> >>> > previous
>>>>> >>> > one. The difference may be some Cmake options.
>>>>> >>> >
>>>>> >>> > Do you suggest me to use another OS, like ubuntu or Redhat-based
>>>>> OS?
>>>>> >>> >
>>>>> >>> > Wei
>>>>> >>> >
>>>>> >>> >
>>>>> >>> >
>>>>> >>> > On Fri, Jan 31, 2014 at 5:46 PM, Matt McCormick
>>>>> >>> > <matt.mccormick at kitware.com>
>>>>> >>> > wrote:
>>>>> >>> >>
>>>>> >>> >> Hmm, the only variable that should be adjusted should be called
>>>>> >>> >> TubeTK_USE_VTK.
>>>>> >>> >>
>>>>> >>> >> Starting a clean build with the defaults is good first step.
>>>>> >>> >>
>>>>> >>> >> Thanks,
>>>>> >>> >> Matt
>>>>> >>> >>
>>>>> >>> >> On Fri, Jan 31, 2014 at 7:35 PM, Wei Liu <weiliu620 at gmail.com>
>>>>> wrote:
>>>>> >>> >> > Matt,
>>>>> >>> >> >
>>>>> >>> >> > I didn't install VTK in the system, and I double checked the
>>>>> >>> >> > /usr/lib
>>>>> >>> >> > and
>>>>> >>> >> > lib64 directory.
>>>>> >>> >> >
>>>>> >>> >> > I built with the USE_VTK set to off. Is that a possible
>>>>> reason? I'm
>>>>> >>> >> > re-building TubeTK with it on now.
>>>>> >>> >> >
>>>>> >>> >> > Wei
>>>>> >>> >> >
>>>>> >>> >> >
>>>>> >>> >> >
>>>>> >>> >> >
>>>>> >>> >> > On Fri, Jan 31, 2014 at 4:08 PM, Matt McCormick
>>>>> >>> >> > <matt.mccormick at kitware.com>
>>>>> >>> >> > wrote:
>>>>> >>> >> >>
>>>>> >>> >> >> Hi Wei,
>>>>> >>> >> >>
>>>>> >>> >> >> This is not expected.  Is a system VTK installed?
>>>>> >>> >> >>
>>>>> >>> >> >> Thanks,
>>>>> >>> >> >> Matt
>>>>> >>> >> >>
>>>>> >>> >> >>
>>>>> >>> >> >>
>>>>> >>> >> >> On Fri, Jan 31, 2014 at 5:58 PM, Wei Liu <
>>>>> weiliu620 at gmail.com>
>>>>> >>> >> >> wrote:
>>>>> >>> >> >> > Dear TubeTK developers,
>>>>> >>> >> >> >
>>>>> >>> >> >> > I've successfully built TubeTK in release mode. But when I
>>>>> try to
>>>>> >>> >> >> > run
>>>>> >>> >> >> > one of
>>>>> >>> >> >> > the commands in TubeTK-build/bin/ I got the following
>>>>> error:
>>>>> >>> >> >> >
>>>>> >>> >> >> > ./CropImage: symbol lookup error:
>>>>> >>> >> >> >
>>>>> >>> >> >> >
>>>>> >>> >> >> >
>>>>> >>> >> >> >
>>>>> /home/sci/weiliu/packages/TubeTK-Release/VTK-build/bin/libvtkInfovis.so.5.10:
>>>>> >>> >> >> > undefined symbol: _ZTI21vtkArrayDataAlgorithm
>>>>> >>> >> >> >
>>>>> >>> >> >> > I'm using gcc 4.7.1 under opensuse 12.2 64 bit. And I just
>>>>> let
>>>>> >>> >> >> > tubetk
>>>>> >>> >> >> > to
>>>>> >>> >> >> > build everything including ITK and VTK. Actually I got the
>>>>> same
>>>>> >>> >> >> > error
>>>>> >>> >> >> > when
>>>>> >>> >> >> > trying to run other commands.
>>>>> >>> >> >> >
>>>>> >>> >> >> > Is this error expected at this stage of development?
>>>>> >>> >> >> >
>>>>> >>> >> >> > Thanks,
>>>>> >>> >> >> > Wei
>>>>> >>> >> >> >
>>>>> >>> >> >> > _______________________________________________
>>>>> >>> >> >> > Tubetk-developers mailing list
>>>>> >>> >> >> > Tubetk-developers at tubetk.org
>>>>> >>> >> >> >
>>>>> >>> >> >> >
>>>>> http://public.kitware.com/cgi-bin/mailman/listinfo/tubetk-developers
>>>>> >>> >> >> >
>>>>> >>> >> >
>>>>> >>> >> >
>>>>> >>> >
>>>>> >>> >
>>>>> >>> _______________________________________________
>>>>> >>> Tubetk-developers mailing list
>>>>> >>> Tubetk-developers at tubetk.org
>>>>> >>>
>>>>> http://public.kitware.com/cgi-bin/mailman/listinfo/tubetk-developers
>>>>> >
>>>>> >
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>>
>>>>> ====================================================
>>>>> Stephen R. Aylward, Ph.D.
>>>>> Senior Director of Operations, North Carolina, Kitware, Inc.
>>>>> http://www.kitware.com
>>>>> http://www.aylward.org
>>>>> (919) 969-6990 x300
>>>>> ====================================================
>>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> Tubetk-developers mailing list
>>>> Tubetk-developers at tubetk.org
>>>> http://public.kitware.com/cgi-bin/mailman/listinfo/tubetk-developers
>>>>
>>>>
>>>
>>>
>>> --
>>> Christopher Mullins
>>> R&D Engineer
>>> Kitware Inc.,
>>> 919.869.8871
>>>
>>
>>
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