[Rtk-users] IRTK compiling problems

[Simon Rit]

Hi Marta,
Yes still ITK 3.20, see instructions here:
http://wiki.openrtk.org/index.php/RTK/Users.
I fixed the linux error, a commit of 2 days ago was causing it.
I don't, however, understand some of your windows errors. It seems
that it does not understand the ggo files with enum variables although
this has been working on Windows and Linux so far. A potential
explanation would be that you have installed an old version of
gengetopt on your computer? Maybe you can send me your CMakeCache.txt
to help me fixing it? You mentioned a problem with getopt.h in your
first email but I did not see it in the log.
There is also a linking problem with Cuda that your CMakeCache.txt
might help me to understand.
Thanks,
Simon

On Wed, Oct 17, 2012 at 9:53 AM, Marta Peroni
<marta.peroni at mail.polimi.it> wrote:
> Hi!
> sorry that it took soo long to answer.
> For windows:
> compiler is Visual Studio Express 2008 and we are using Windows 7  (see
> log_windows attached)
>
> For Linux:
> I downloaded the latest version from here: https://github.com/SimonRit/RTK
> and tried to compile against ITK 3.20 (should I try with ITK4?)
> Got over the usual nvcc error, but still could not compile unfortunately
> (see log_linux attached)
>
> thanks a lot
> Marta
>
> On 12 October 2012 11:19, Simon Rit <simon.rit at creatis.insa-lyon.fr> wrote:
>>
>> Hi Marta,
>> Thanks for the feedback. Yes, we would be interested in knowing what
>> are the problems with getopt.h. Could you send us more information
>> (logs, Windows version, compiler, ...)?
>> Regarding Cuda, this is a bit of a weird problem. I have tried to
>> merge the latest version of Plastimatch cmake files with rtk. Could
>> you update your RTK repository and give it another try?
>> A simple Shepp Logan reconstruction example is available here
>> http://wiki.openrtk.org/index.php/RTK/Scripts/FDK, code examples are
>> available here http://wiki.openrtk.org/index.php/RTK/Users.
>> Good luck,
>> Simon
>>
>> On Fri, Oct 12, 2012 at 1:42 AM, Marta Peroni
>> <marta.peroni at mail.polimi.it> wrote:
>> > Dear Simon and David,
>> > was a pleasure to meet you at MICCAI. As I mentioned, we are looking
>> > into
>> > acquiring CBCT on robotic C-arm at CNAO and as you suggested, we had a
>> > look
>> > at IRTK.
>> >
>> > Now, problem is that we were not able to compile it neither on windows
>> > nor
>> > linux (arch distrib).
>> >
>> > For windows, main issues were related to the windows version of getopt
>> > which
>> > generate syntax error (Marco can provide you a log file, if you'd like).
>> >
>> > For linux, I had cuda problem. In particular, although correctly
>> > configured,
>> > I am stuck with this:
>> > [  7%] Building NVCC (Device) object
>> >
>> > code/CMakeFiles/cuda_compile.dir//./cuda_compile_generated_rtkCudaFFTRampImageFilter.cu.o
>> > /usr/include/surface_functions.h: In function 'void surf1Dread(T*,
>> > surface<void, 1>, int, int, cudaSurfaceBoundaryMode)':
>> > /usr/include/surface_functions.h:100: error: there are no arguments to
>> > '__surf1Dreadc1' that depend on a template parameter, so a declaration
>> > of
>> > '__surf1Dreadc1' must be available
>> > /usr/include/surface_functions.h:100: error: (if you use '-fpermissive',
>> > G++
>> > will accept your code, but allowing the use of an undeclared name is
>> > deprecated)
>> > /usr/include/surface_functions.h:101: error: there are no arguments to
>> > '__surf1Dreads1' that depend on a template parameter, so a declaration
>> > of
>> > '__surf1Dreads1' must be available
>> > /usr/include/surface_functions.h:102: error: there are no arguments to
>> > '__surf1Dreadu1' that depend on a template parameter, so a declaration
>> > of
>> > '__surf1Dreadu1' must be available
>> > /usr/include/surface_functions.h:103: error: there are no arguments to
>> > '__surf1Dreadu2' that depend on a template parameter, so a declaration
>> > of
>> > '__surf1Dreadu2' must be available
>> > /usr/include/surface_functions.h:104: error: there are no arguments to
>> > '__surf1Dreadu4' that depend on a template parameter, so a declaration
>> > of
>> > '__surf1Dreadu4' must be available
>> > /usr/include/surface_functions.h: In function 'void surf2Dread(T*,
>> > surface<void, 2>, int, int, int, cudaSurfaceBoundaryMode)':
>> > /usr/include/surface_functions.h:460: error: there are no arguments to
>> > '__surf2Dreadc1' that depend on a template parameter, so a declaration
>> > of
>> > '__surf2Dreadc1' must be available
>> > /usr/include/surface_functions.h:461: error: there are no arguments to
>> > '__surf2Dreads1' that depend on a template parameter, so a declaration
>> > of
>> > '__surf2Dreads1' must be available
>> > /usr/include/surface_functions.h:462: error: there are no arguments to
>> > '__surf2Dreadu1' that depend on a template parameter, so a declaration
>> > of
>> > '__surf2Dreadu1' must be available
>> > /usr/include/surface_functions.h:463: error: there are no arguments to
>> > '__surf2Dreadu2' that depend on a template parameter, so a declaration
>> > of
>> > '__surf2Dreadu2' must be available
>> > /usr/include/surface_functions.h:464: error: there are no arguments to
>> > '__surf2Dreadu4' that depend on a template parameter, so a declaration
>> > of
>> > '__surf2Dreadu4' must be available
>> > CMake Error at
>> > cuda_compile_generated_rtkCudaFFTRampImageFilter.cu.o.cmake:252
>> > (message):
>> >   Error generating file
>> >
>> >
>> > /home/marta/provaIRTK/build/code/CMakeFiles/cuda_compile.dir//./cuda_compile_generated_rtkCudaFFTRampImageFilter.cu.o
>> >
>> >
>> > make[2]: ***
>> >
>> > [code/CMakeFiles/cuda_compile.dir/./cuda_compile_generated_rtkCudaFFTRampImageFilter.cu.o]
>> > Error 1
>> > make[1]: *** [code/CMakeFiles/rtkcuda.dir/all] Error 2
>> > make: *** [all] Error 2
>> >
>> > I remember having the same issue in plastimatch some time ago (it is due
>> > to
>> > cuda version) and James added some -fpermissive to fix the issue.
>> >
>> > But anyhow, can you please guide us through a compilation to make it
>> > work
>> > and test it on the new projections?
>> >
>> > thanks a lot
>> > Best Regards,
>> > Marta Peroni
>> >
>> >
>> > --
>> > *******************************************************************
>> > Marta Peroni, PhD
>> > Bioengineering department - Politecnico di Milano (IT)
>> >
>> > contacts:
>> > mail: marta.peroni at mail.polimi.it , m.peroni at gmail.com
>> > mobile: +393488202136 (IT)
>> > office: +39 02 2399 9022
>> >
>> > ********************************************************************
>> >
>>
>>
>
>
>
> --
> *******************************************************************
> Marta Peroni, PhD
> Bioengineering department - Politecnico di Milano (IT)
>
> contacts:
> mail: marta.peroni at mail.polimi.it , m.peroni at gmail.com
> mobile: +393488202136 (IT)
> office: +39 02 2399 9022
>
> ********************************************************************
>