[Insight-developers] Dashboard Looking Good

Bill Lorensen bill.lorensen at gmail.com
Sat Apr 12 15:28:16 EDT 2008


Sounds fair.

Bill

On Sat, Apr 12, 2008 at 2:04 PM, Stephen Aylward
<Stephen.Aylward at kitware.com> wrote:
> We can piggy-back on the Insight Journals SVN repository.
>
>  Any data is MIDAS can be published via SVN.  We can upload these data
>  to MIDAS and then have the CMakeLists.txt files do the automatic
>  checkout for the Insight Journals / MIDAS's SVN repository.
>
>  I think this should be done after the release.  I'd like at least two
>  dashboard cycles to be available for testing the automated checkout.
>
>  Agreed?
>
>  Stephen
>
>
>
>  On Sat, Apr 12, 2008 at 1:48 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>  > Should we try the svn method. ITK does not require cmake 2.6. Maybe
>  >  next release?
>  >
>  >  If we can't do something by this release, then I think we should move
>  >  the tests from the CMakeLists.txt file. And both
>  >  DeformableRegistration15Test tests seem to be failing.
>  >
>  >  Bill
>  >
>  >  On Sat, Apr 12, 2008 at 1:23 PM, Stephen Aylward
>  >
>  >
>  > <Stephen.Aylward at kitware.com> wrote:
>  >  > Hi,
>  >  >
>  >  >  Ahhh - that is the name used on Luis' computer.   No worries.
>  >  >
>  >  >  The original data is available on MIDAS, and has been conveniently
>  >  >  packaged by Luis on the following websites:
>  >  >
>  >  >  http://public.kitware.com/pub/itk/Data/HealthyVolunteersMRIDatabase/
>  >  >  - for Registration15test2 / CMake var ITK_HEALTHY....
>  >  >
>  >  >  http://public.kitware.com/pub/itk/Data/BrainWeb/
>  >  >  - for BrainWeb data / CMake var ...BRAINWEB...
>  >  >
>  >  >  I'm for making the data available via SVN.   The CMakeLists.txt files
>  >  >  could automatically download it if the user requests, just like we do
>  >  >  for itkLibXML2.
>  >  >
>  >  >  Another option is to have CMake fetch the data directly from the
>  >  >  website using CURL (which is already distributed with CMake).  I
>  >  >  believe this would be easy with the new version of CMake (2.6 Beta)
>  >  >
>  >  >  Perhaps we should not make the users click multiple times on a website
>  >  >  to download, but then again this is a one-time task that will only be
>  >  >  done by high-end developers/testers.
>  >  >
>  >  >  Stephen
>  >  >
>  >  >
>  >  >
>  >  >  On Sat, Apr 12, 2008 at 1:13 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>  >  >  > I noticed it in the path to this test:
>  >  >  >  http://www.cdash.org/CDash/testDetails.php?test=2323832&build=51555
>  >  >  >
>  >  >  >  D:\cygwin\home\ibanez\Dashboards\bin\InsightVS8Release\bin\release\RegistrationExamples14.exe
>  >  >  >  DeformableRegistration15Test
>  >  >  >  D:/cygwin/home/ibanez/data/NAMIC/KillianRegistration/Slicer3RegistrationTest_Stephen/b/I.hdr
>  >  >  >  D:/cygwin/home/ibanez/data/NAMIC/KillianRegistration/Slicer3RegistrationTest_Stephen/d/I.hdr
>  >  >  >  D:/cygwin/home/ibanez/Dashboards/bin/InsightVS8Release/Testing/Temporary/DeformableRegistration15Test2.mhd
>  >  >  >  D:/cygwin/home/ibanez/Dashboards/bin/InsightVS8Release/Testing/Temporary/DeformableRegistration15Test2DifferenceAfter.mhd
>  >  >  >  D:/cygwin/home/ibanez/Dashboards/bin/InsightVS8Release/Testing/Temporary/DeformableRegistration15Test2DifferenceBefore.mhd
>  >  >  >  D:/cygwin/home/ibanez/Dashboards/bin/InsightVS8Release/Testing/Temporary/DeformableRegistration15Test2DeformationField.mhd
>  >  >  >  0 0 D:/cygwin/home/ibanez/Dashboards/bin/InsightVS8Release/Testing/Temporary/DeformableRegistration15Test2FinalTransformParameters.txt
>  >  >  >  5 100 10.0 50
>  >  >  >
>  >  >  >  So where is the repository for this data and the brainweb data?
>  >  >  >
>  >  >  >  Bill
>  >  >  >
>  >  >  >
>  >  >  >  On Sat, Apr 12, 2008 at 12:58 PM, Stephen Aylward
>  >  >  >
>  >  >  >
>  >  >  > <Stephen.Aylward at kitware.com> wrote:
>  >  >  >  > Hi,
>  >  >  >  >
>  >  >  >  >  Ok - I might be 1/2 blind, but :)
>  >  >  >  >
>  >  >  >  >  I cannot find a reference to Kilian.   Did a grep -R Kilian * at the
>  >  >  >  >  top of the Insight dir.
>  >  >  >  >
>  >  >  >  >  Where is the reference that I am missing?
>  >  >  >  >
>  >  >  >  >  Thanks,
>  >  >  >  >  Stephen
>  >  >  >  >
>  >  >  >  >  On Sat, Apr 12, 2008 at 12:43 PM, Stephen Aylward
>  >  >  >  >
>  >  >  >  >
>  >  >  >  > <Stephen.Aylward at kitware.com> wrote:
>  >  >  >  >  > Hi,
>  >  >  >  >  >
>  >  >  >  >  >  Sorry - I should have been more clear.
>  >  >  >  >  >
>  >  >  >  >  >  You've exactly hit on the important point - we can distribute Liz's
>  >  >  >  >  >  data.   We cannot distribute Kilian's data.   It is important for all
>  >  >  >  >  >  to realize that this is Liz's data and not Kilian's.
>  >  >  >  >  >
>  >  >  >  >  >  Seems like we need to change the names so that all is clear.
>  >  >  >  >  >
>  >  >  >  >  >  Thanks,
>  >  >  >  >  >  Stephen
>  >  >  >  >  >
>  >  >  >  >  >
>  >  >  >  >  >
>  >  >  >  >  >  On Sat, Apr 12, 2008 at 12:10 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>  >  >  >  >  >  > Sorry, I was looking at the names of the files and directories. Are
>  >  >  >  >  >  >  both data sets Liz's? If we can't distribute them, then we should run
>  >  >  >  >  >  >  the tests on data that we distribute.\
>  >  >  >  >  >  >
>  >  >  >  >  >  >  Bill
>  >  >  >  >  >  >
>  >  >  >  >  >  >
>  >  >  >  >  >  >
>  >  >  >  >  >  >  On Sat, Apr 12, 2008 at 9:42 AM, Stephen Aylward
>  >  >  >  >  >  >  <Stephen.Aylward at kitware.com> wrote:
>  >  >  >  >  >  >  > For clarification - this is data from UNC - Dr. Bullitt - and should
>  >  >  >  >  >  >  >  be referred to as such.
>  >  >  >  >  >  >  >
>  >  >  >  >  >  >  >  Thanks,
>  >  >  >  >  >  >  >  Stephen
>  >  >  >  >  >  >  >
>  >  >  >  >  >  >  >
>  >  >  >  >  >  >  >
>  >  >  >  >  >  >  >  On Sat, Apr 12, 2008 at 9:03 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>  >  >  >  >  >  >  >  > Luis,
>  >  >  >  >  >  >  >  >
>  >  >  >  >  >  >  >  >  The changes you made to the multi res registration examples are
>  >  >  >  >  >  >  >  >  producing great results. Looks like we need a second regression image
>  >  >  >  >  >  >  >  >  for the second multi res registration example.
>  >  >  >  >  >  >  >  >
>  >  >  >  >  >  >  >  >  The tests DeformableRegistration15Test1 and
>  >  >  >  >  >  >  >  >  DeformableRegistration15Test2 are failing on all platforms they run
>  >  >  >  >  >  >  >  >  on. Looks like they use the data from BrainWeb (Test1) or Kilian
>  >  >  >  >  >  >  >  >  (Test2).
>  >  >  >  >  >  >  >  >
>  >  >  >  >  >  >  >  >  It's not clear to me what BrainWeb data is required to run the tests.
>  >  >  >  >  >  >  >  >  And I don't think Kilian's data should be in a test checked into ITK
>  >  >  >  >  >  >  >  >  unless we can add his data to the ITK distribution.
>  >  >  >  >  >  >  >  >
>  >  >  >  >  >  >  >  >  Bill
>  >  >  >  >  >  >  >  >  _______________________________________________
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>  >  >  >  >  >  >  >  >
>  >  >  >  >  >  >  >
>  >  >  >  >  >  >  >
>  >  >  >  >  >  >  >
>  >  >  >  >  >  >  >  --
>  >  >  >  >  >  >  >  Stephen R. Aylward, Ph.D.
>  >  >  >  >  >  >  >  Chief Medical Scientist
>  >  >  >  >  >  >  >  Kitware, Inc. - Chapel Hill Office
>  >  >  >  >  >  >  >  http://www.kitware.com
>  >  >  >  >  >  >  >  (518) 371-3971 x300
>  >  >  >  >  >  >  >
>  >  >  >  >  >  >
>  >  >  >  >  >
>  >  >  >  >  >
>  >  >  >  >  >
>  >  >  >  >  >  --
>  >  >  >  >  >
>  >  >  >  >  >
>  >  >  >  >  > Stephen R. Aylward, Ph.D.
>  >  >  >  >  >  Chief Medical Scientist
>  >  >  >  >  >  Kitware, Inc. - Chapel Hill Office
>  >  >  >  >  >  http://www.kitware.com
>  >  >  >  >  >  (518) 371-3971 x300
>  >  >  >  >  >
>  >  >  >  >
>  >  >  >  >
>  >  >  >  >
>  >  >  >  >  --
>  >  >  >  >
>  >  >  >  >
>  >  >  >  > Stephen R. Aylward, Ph.D.
>  >  >  >  >  Chief Medical Scientist
>  >  >  >  >  Kitware, Inc. - Chapel Hill Office
>  >  >  >  >  http://www.kitware.com
>  >  >  >  >  (518) 371-3971 x300
>  >  >  >  >
>  >  >  >
>  >  >
>  >  >
>  >  >
>  >  >  --
>  >  >
>  >  >
>  >  > Stephen R. Aylward, Ph.D.
>  >  >  Chief Medical Scientist
>  >  >  Kitware, Inc. - Chapel Hill Office
>  >  >  http://www.kitware.com
>  >  >  (518) 371-3971 x300
>  >  >
>  >
>
>
>
>  --
>
>
> Stephen R. Aylward, Ph.D.
>  Chief Medical Scientist
>  Kitware, Inc. - Chapel Hill Office
>  http://www.kitware.com
>  (518) 371-3971 x300
>


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