[vtkusers] Issuings running make in my VTK-build directory

Andrew Lam werdna.mal222 at gmail.com
Wed Apr 12 15:20:05 EDT 2017 

Cory,

I ran make again and this is the full output.

alam38 at csc235x22:/tmp/VTK-build $ make -j4
[  0%] Built target kwiml_test
[  0%] Built target vtkWrappingTools
[  0%] Built target vtksys
[  0%] Built target vtkalglib
[  1%] Built target vtklz4
[  2%] Built target vtkzlib
[  2%] Built target vtkexpat
[  2%] Built target vtkDICOMParser
[  2%] Built target vtkEncodeString
[  2%] Built target vtkpng
[  2%] Built target vtkglew
[  2%] Built target vtkHashSource
[  2%] Built target vtkjpeg
[  2%] Built target H5make_libsettings
[  2%] Built target vtkWrapTcl
[  2%] Built target H5detect
[  2%] Built target vtkParseJava
[  2%] Built target vtkWrapPythonInit
[  2%] Built target vtkWrapTclInit
[  2%] Built target vtkWrapPython
[  2%] Built target vtkWrapJava
[  2%] Built target vtkjsoncpp
[  2%] Built target verdict
[  2%] Built target vtkgl2ps
[  2%] Built target vtksqlite
[  2%] Built target vtkWrapHierarchy
[  2%] Built target vtkoggtheora
[  4%] Built target vtkproj4
[  4%] Built target vtklibxml2
[  4%] Built target vtkmetaio
[  4%] Built target vtktiff
[  5%] Built target vtkfreetype
[  6%] Built target vtkCommonCore
[  6%] Built target vtkCommonSystem
[  6%] Built target vtkCommonMath
[  6%] Built target vtkCommonMisc
[  8%] Built target vtkhdf5
[  9%] Built target vtkWrappingPythonCore
Scanning dependencies of target vtkCommonMiscCxxTests
[  9%] Built target vtkCommonSystemCxxTests
[  9%] Built target vtkCommonTransforms
[  9%] Built target vtkpython
[  9%] Built target vtkhdf5_hl
[  9%] Python Wrapping - generating vtkAbstractArrayPython.cxx
Usage: vtkWrapPython-7.1 [options] infile...
  --help            print this help message
  --version         print the VTK version
  -o <file>         the output file
  -I <dir>          add an include directory
  -D <macro[=def]>  define a preprocessor macro
  -U <macro>        undefine a preprocessor macro
  @<file>           read arguments from a file
  --hints <file>    the hints file to use
  --types <file>    the type hierarchy file to use
  --concrete        force concrete class (ignored, deprecated)
  --abstract        force abstract class (ignored, deprecated)
  --vtkobject       vtkObjectBase-derived class (ignored, deprecated)
  --special         non-vtkObjectBase class (ignored, deprecated)
make[2]: *** [Wrapping/Python/vtkAbstractArrayPython.cxx] Error 1
make[1]: *** [Wrapping/Python/CMakeFiles/vtkCommonCorePythonD.dir/all]
Error 2
make[1]: *** Waiting for unfinished jobs....
[  9%] For vtkCommonDataModel - updating vtkCommonDataModelHierarchy.txt
[  9%] Building CXX object
Common/Misc/Testing/Cxx/CMakeFiles/vtkCommonMiscCxxTests.dir/vtkCommonMiscCxxTests.cxx.o
[  9%] Building CXX object
Common/Misc/Testing/Cxx/CMakeFiles/vtkCommonMiscCxxTests.dir/TestPolygonBuilder.cxx.o
[  9%] Building CXX object
Common/Misc/Testing/Cxx/CMakeFiles/vtkCommonMiscCxxTests.dir/TestPolygonBuilder2.cxx.o
[ 29%] Built target VTKData
[ 29%] Building CXX object
Common/Misc/Testing/Cxx/CMakeFiles/vtkCommonMiscCxxTests.dir/TestPolygonBuilder3.cxx.o
[ 29%] Building CXX object
Common/Misc/Testing/Cxx/CMakeFiles/vtkCommonMiscCxxTests.dir/TestPolygonBuilder4.cxx.o
[ 29%] Building CXX object
Common/Misc/Testing/Cxx/CMakeFiles/vtkCommonMiscCxxTests.dir/UnitTestFunctionParser.cxx.o
[ 29%] Linking CXX executable ../../../../bin/vtkCommonMiscCxxTests
[ 29%] Built target vtkCommonMiscCxxTests
Scanning dependencies of target vtkCommonDataModel
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkAbstractCellLinks.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkAdjacentVertexIterator.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkAbstractPointLocator.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkAbstractCellLocator.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkAMRBox.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkAMRUtilities.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkAnimationScene.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkAnnotation.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkAnnotationLayers.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkArrayData.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkAttributesErrorMetric.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkBiQuadraticQuad.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkBiQuadraticQuadraticHexahedron.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkBiQuadraticQuadraticWedge.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkBiQuadraticTriangle.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkBox.cxx.o
[ 29%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkBSPCuts.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkBSPIntersections.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkCell3D.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkCellArray.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkCell.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkCellData.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkCellIterator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkCellLinks.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkCellLocator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkCellTypes.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkCompositeDataSet.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkCompositeDataIterator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkCone.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkConvexPointSet.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkCubicLine.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkCylinder.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkDataSetCellIterator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkDataObjectCollection.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkDataObject.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkDataObjectTypes.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkDataObjectTree.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkDataObjectTreeIterator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkDataSetAttributes.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkDataSetCollection.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkDataSet.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkDirectedAcyclicGraph.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkDirectedGraph.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkDistributedGraphHelper.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkEdgeListIterator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkEdgeTable.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkEmptyCell.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkExtractStructuredGridHelper.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkFieldData.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGenericAdaptorCell.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGenericAttributeCollection.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGenericAttribute.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGenericCell.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGenericCellIterator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGenericCellTessellator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGenericDataSet.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGenericEdgeTable.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGenericInterpolatedVelocityField.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGenericPointIterator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGenericSubdivisionErrorMetric.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGeometricErrorMetric.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGraph.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGraphEdge.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkGraphInternals.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkHexagonalPrism.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkHexahedron.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkHierarchicalBoxDataIterator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkHierarchicalBoxDataSet.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkHyperOctreeCursor.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkHyperOctree.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkHyperOctreePointsGrabber.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkHyperTree.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkHyperTreeCursor.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkHyperTreeGrid.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkImageData.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkImageIterator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkImplicitBoolean.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkImplicitDataSet.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkImplicitFunctionCollection.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkImplicitFunction.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkImplicitHalo.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkImplicitSelectionLoop.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkImplicitSum.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkImplicitVolume.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkImplicitWindowFunction.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkIncrementalOctreeNode.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkIncrementalOctreePointLocator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkIncrementalPointLocator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkInEdgeIterator.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkInformationQuadratureSchemeDefinitionVectorKey.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkIterativeClosestPointTransform.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkKdNode.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkKdTree.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkKdTreePointLocator.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkLine.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkLocator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkMarchingSquaresLineCases.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkMarchingCubesTriangleCases.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkMeanValueCoordinatesInterpolator.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkMergePoints.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkMultiBlockDataSet.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkMultiPieceDataSet.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkMutableDirectedGraph.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkMutableUndirectedGraph.cxx.o
[ 30%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkNonLinearCell.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkNonMergingPointLocator.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkOctreePointLocator.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkOctreePointLocatorNode.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkOrderedTriangulator.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkOutEdgeIterator.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkPath.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkPentagonalPrism.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkPerlinNoise.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkPiecewiseFunction.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkPixel.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkPixelExtent.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkPixelTransfer.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkPlaneCollection.cxx.o
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Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkPlane.cxx.o
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[ 31%] Building CXX object
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[ 31%] Building CXX object
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[ 31%] Building CXX object
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[ 31%] Building CXX object
Common/DataModel/CMakeFiles/vtkCommonDataModel.dir/vtkUniformGridAMRDataIterator.cxx.o
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[ 31%] Built target vtkCommonDataModel
make: *** [all] Error 2

Please let me know if you see anything that might help.

Thanks,
Andrew

On Wed, Apr 12, 2017 at 11:52 AM, Cory Quammen <cory.quammen at kitware.com>
wrote:

> Andrew,
>
> Can you provide additional output from make? There ought to be
> additional error messages above those you provided that will provide
> additional clues.
>
> Thanks,
> Cory
>
> On Wed, Apr 12, 2017 at 2:49 PM, Andrew Lam <werdna.mal222 at gmail.com>
> wrote:
> > Cory,
> >
> > Sorry i'm double emailing you Cory, I realized another error that I
> missed
> > and I forgot to include the mailing list again.
> >
> > I did what you suggested and built in /tmp this did get rid of the clock
> > skew issues, but I still have the same make issues from before. The last
> few
> > lines of output are
> >
> > -- Downloaded object:
> > "/tmp/VTK-build/ExternalData/Objects/MD5/63106c09179630b321d1e52170dc75
> 51"
> > [ 30%] Built target VTKData
> > make: *** [all] Error 2
> >
> > everything else above that seemed fine,except for these lines
> >
> > make[2]: *** [Wrapping/Python/vtkAngularPeriodicDataArrayPython.cxx]
> Error 1
> > make[1]: *** [Wrapping/Python/CMakeFiles/vtkCommonCorePythonD.dir/all]
> Error
> > 2
> >
> > and the last line of output.
> >
> > make: *** [all] Error 2
> >
> > Thanks,
> > Andrew
> >
> >
> >
> > On Wed, Apr 12, 2017 at 11:46 AM, Andrew Lam <werdna.mal222 at gmail.com>
> > wrote:
> >>
> >> Cory,
> >>
> >> I did what you suggested and built in /tmp this did get rid of the clock
> >> skew issues, but I still have the same make issues from before. The
> last few
> >> lines of output are
> >>
> >> -- Downloaded object:
> >> "/tmp/VTK-build/ExternalData/Objects/MD5/63106c09179630b321d1e52170dc75
> 51"
> >> [ 30%] Built target VTKData
> >> make: *** [all] Error 2
> >>
> >> everything else above that seemed fine. I think the only issue is the
> last
> >> line of output.
> >>
> >> make: *** [all] Error 2
> >>
> >> Thanks,
> >> Andrew
> >>
> >> On Wed, Apr 12, 2017 at 11:23 AM, Cory Quammen <
> cory.quammen at kitware.com>
> >> wrote:
> >>>
> >>> Andrew,
> >>>
> >>> You could try building in /tmp on the local machine. That should
> >>> eliminate the clock skew issues, then you can see if there is a
> >>> VTK-specific problem preventing the compilation. It should be a lot
> >>> faster to compile on the local disk as well.
> >>>
> >>> Cory
> >>>
> >>> On Wed, Apr 12, 2017 at 2:15 PM, Andrew Lam <werdna.mal222 at gmail.com>
> >>> wrote:
> >>> > Cory,
> >>> >
> >>> > In my case it is, because I only have a desktop and not a laptop and
> we
> >>> > need
> >>> > to demo our projects in class. I've asked the instructor for help
> with
> >>> > the
> >>> > issue and this is the first time he's teaching the class and he
> hasn't
> >>> > built
> >>> > VTK on the school servers.
> >>> >
> >>> > Thanks,
> >>> > Andrew
> >>> >
> >>> > On Wed, Apr 12, 2017 at 11:11 AM, Cory Quammen
> >>> > <cory.quammen at kitware.com>
> >>> > wrote:
> >>> >>
> >>> >> Andrew,
> >>> >>
> >>> >> Typically, servers like the one on which I assume you are compiling
> >>> >> have two types of storage available:
> >>> >>
> >>> >> 1). A network file system that you can access on more than one
> server
> >>> >> and perhaps a personal computer. These typically hold a home
> directory
> >>> >> for you and may be backed up.
> >>> >>
> >>> >> 2). Local disks on the server. It is faster to access these disks
> >>> >> because they are local. As a result, at a number of computing
> centers
> >>> >> it is often possible to use these disks to do things like compile
> >>> >> source code. These disks are typically not backed up - think of them
> >>> >> as "scratch" paper where you do somewhat temporary work.
> >>> >>
> >>> >> Is it necessary to compile VTK on the school server? If so, I
> suggest
> >>> >> asking your instructor who has hopefully done that once already and
> >>> >> knows how to resolve the issue you are facing.
> >>> >>
> >>> >> HTH,
> >>> >> Cory
> >>> >>
> >>> >> On Wed, Apr 12, 2017 at 1:57 PM, Andrew Lam <
> werdna.mal222 at gmail.com>
> >>> >> wrote:
> >>> >> > Cory,
> >>> >> >
> >>> >> > I'm sorry I don't know what you mean by local scratch space.
> >>> >> >
> >>> >> > Thanks,
> >>> >> >
> >>> >> > Andrew
> >>> >> >
> >>> >> > On Wed, Apr 12, 2017 at 10:55 AM, Cory Quammen
> >>> >> > <cory.quammen at kitware.com>
> >>> >> > wrote:
> >>> >> >>
> >>> >> >> > I'm currently building on my school's servers.
> >>> >> >>
> >>> >> >> Is there local scratch space on which you can build software on
> >>> >> >> that
> >>> >> >> server? My guess is you are building in a home directory that is
> on
> >>> >> >> an
> >>> >> >> AFS or NFS or some other network file system, and that is causing
> >>> >> >> you
> >>> >> >> problems.
> >>> >> >>
> >>> >> >> Thanks,
> >>> >> >> Cory
> >>> >> >>
> >>> >> >> > Thanks,
> >>> >> >> > Andrew
> >>> >> >> >
> >>> >> >> >
> >>> >> >> > On Wed, Apr 12, 2017 at 10:50 AM, Andrew Lam
> >>> >> >> > <werdna.mal222 at gmail.com>
> >>> >> >> > wrote:
> >>> >> >> >>
> >>> >> >> >> Cory,
> >>> >> >> >>
> >>> >> >> >> I'm currently building on my school's servers.
> >>> >> >> >>
> >>> >> >> >> Thanks,
> >>> >> >> >> Andrew
> >>> >> >> >>
> >>> >> >> >> On Wed, Apr 12, 2017 at 10:47 AM, Cory Quammen
> >>> >> >> >> <cory.quammen at kitware.com>
> >>> >> >> >> wrote:
> >>> >> >> >>>
> >>> >> >> >>> Andrew,
> >>> >> >> >>>
> >>> >> >> >>> Are you building on a networked file system of some sort?
> I've
> >>> >> >> >>> run
> >>> >> >> >>> into issues long ago building software before when the file
> >>> >> >> >>> system
> >>> >> >> >>> and
> >>> >> >> >>> computer have different ideas of what time it is.
> >>> >> >> >>>
> >>> >> >> >>> - Cory
> >>> >> >> >>>
> >>> >> >> >>> On Wed, Apr 12, 2017 at 1:29 PM, Andrew Lam
> >>> >> >> >>> <werdna.mal222 at gmail.com>
> >>> >> >> >>> wrote:
> >>> >> >> >>> > Hi Andy,
> >>> >> >> >>> >
> >>> >> >> >>> > It's still not working. I made a fresh build directory and
> >>> >> >> >>> > ran
> >>> >> >> >>> > through
> >>> >> >> >>> > the
> >>> >> >> >>> > motions again. It still has the same issue. I've attached
> my
> >>> >> >> >>> > CMakeCache.txt
> >>> >> >> >>> > file from my build directory. Please let me know if you see
> >>> >> >> >>> > anything
> >>> >> >> >>> > or
> >>> >> >> >>> > if
> >>> >> >> >>> > there is any other information that you might think would
> >>> >> >> >>> > help.
> >>> >> >> >>> >
> >>> >> >> >>> > Thanks,
> >>> >> >> >>> > Andrew
> >>> >> >> >>> >
> >>> >> >> >>> > On Wed, Apr 12, 2017 at 8:43 AM, Andy Bauer
> >>> >> >> >>> > <andy.bauer at kitware.com>
> >>> >> >> >>> > wrote:
> >>> >> >> >>> >>
> >>> >> >> >>> >> Hi Andrew,
> >>> >> >> >>> >>
> >>> >> >> >>> >> This should compile for you now. If it doesn't, please let
> >>> >> >> >>> >> us
> >>> >> >> >>> >> know
> >>> >> >> >>> >> and
> >>> >> >> >>> >> we
> >>> >> >> >>> >> can see how to get it working for you. If you do have
> >>> >> >> >>> >> problems I
> >>> >> >> >>> >> recommend
> >>> >> >> >>> >> attaching your CMakeCache.txt file from your build
> directory
> >>> >> >> >>> >> so
> >>> >> >> >>> >> it's
> >>> >> >> >>> >> easier
> >>> >> >> >>> >> for others to inspect what you did.
> >>> >> >> >>> >>
> >>> >> >> >>> >> Best,
> >>> >> >> >>> >> Andy
> >>> >> >> >>> >>
> >>> >> >> >>> >> On Wed, Apr 12, 2017 at 11:12 AM, Andrew Lam
> >>> >> >> >>> >> <werdna.mal222 at gmail.com>
> >>> >> >> >>> >> wrote:
> >>> >> >> >>> >>>
> >>> >> >> >>> >>> Ok Andy I can see it now thanks,
> >>> >> >> >>> >>>
> >>> >> >> >>> >>> my variables are set to
> >>> >> >> >>> >>>
> >>> >> >> >>> >>>  Module_vtkParallelMPI4Py        *OFF
> >>> >> >> >>> >>>  PYTHON_EXECUTABLE               */bin/python2
> >>> >> >> >>> >>>  PYTHON_EXTRA_LIBS               *
> >>> >> >> >>> >>>  PYTHON_INCLUDE_DIR              */usr/include/python2.7
> >>> >> >> >>> >>>  PYTHON_LIBRARY                  *//lib64/
> libpython2.7.so
> >>> >> >> >>> >>>  PYTHON_UTIL_LIBRARY             */usr/lib64/libutil.so
> >>> >> >> >>> >>>  VTK_ENABLE_VTKPYTHON            *ON
> >>> >> >> >>> >>>
> >>> >> >> >>> >>> after I set VTK_WRAP_PYTHON CMake variable to ON
> >>> >> >> >>> >>>
> >>> >> >> >>> >>> it seems ok to me, but let me know if they're wrong.
> >>> >> >> >>> >>>
> >>> >> >> >>> >>> Thanks,
> >>> >> >> >>> >>> Andrew
> >>> >> >> >>> >>>
> >>> >> >> >>> >>> On Tue, Apr 11, 2017 at 3:30 PM, Andrew Lam
> >>> >> >> >>> >>> <werdna.mal222 at gmail.com>
> >>> >> >> >>> >>> wrote:
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> Hi, my name is Andrew. I'm currently in a class that
> >>> >> >> >>> >>>> requires
> >>> >> >> >>> >>>> us
> >>> >> >> >>> >>>> to
> >>> >> >> >>> >>>> install VTK.
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> I have an issue running make in my VTK-build directory.
> I
> >>> >> >> >>> >>>> get
> >>> >> >> >>> >>>> a
> >>> >> >> >>> >>>> bunch of
> >>> >> >> >>> >>>> clock skew issues that pop up that won't go away after
> >>> >> >> >>> >>>> calling
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> $ touch *
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> then it will print out
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> make[2]: ***
> >>> >> >> >>> >>>> [Wrapping/Python/vtkAngularPeriodicDataArrayPython.cxx]
> >>> >> >> >>> >>>> Error 1
> >>> >> >> >>> >>>> make[1]: ***
> >>> >> >> >>> >>>> [Wrapping/Python/CMakeFiles/
> vtkCommonCorePythonD.dir/all]
> >>> >> >> >>> >>>> Error 2
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> it will then run to about 32% and then end printing
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> make: *** [all] Error 2
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> I'm using python 2.7, VTK 7.1.1, cmake 3.7.2
> >>> >> >> >>> >>>> I'm also going to include the output of the make call.
> >>> >> >> >>> >>>> Please
> >>> >> >> >>> >>>> let
> >>> >> >> >>> >>>> me
> >>> >> >> >>> >>>> know if you have any suggestions or if you need any more
> >>> >> >> >>> >>>> information
> >>> >> >> >>> >>>> to
> >>> >> >> >>> >>>> understand the issue.
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> [  0%] Built target kwiml_test
> >>> >> >> >>> >>>> [  0%] Built target vtksys
> >>> >> >> >>> >>>> [  1%] Built target vtkWrappingTools
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> >>> >> >> >>> >>>> [  1%] Built target vtkexpat
> >>> >> >> >>> >>>> [  2%] Built target vtkzlib
> >>> >> >> >>> >>>> [  2%] Built target vtkDICOMParser
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> >>> >> >> >>> >>>> [  2%] Built target vtkjpeg
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> >>> >> >> >>> >>>> [  2%] Built target H5make_libsettings
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> >>> >> >> >>> >>>> [  2%] Built target vtkWrapHierarchy
> >>> >> >> >>> >>>> [  4%] Built target vtkproj4
> >>> >> >> >>> >>>> [  4%] Built target vtkfreetype
> >>> >> >> >>> >>>> [  5%] Built target vtklibxml2
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> >>> >> >> >>> >>>> [  5%] Built target vtktiff
> >>> >> >> >>> >>>> [ 20%] Built target vtkCommonCore
> >>> >> >> >>> >>>> [ 26%] Built target VTKData
> >>> >> >> >>> >>>> [ 28%] Built target vtkCommonSystem
> >>> >> >> >>> >>>> [ 29%] Built target vtkCommonMath
> >>> >> >> >>> >>>> [ 29%] Built target vtkhdf5
> >>> >> >> >>> >>>> [ 29%] Built target vtkWrappingPythonCore
> >>> >> >> >>> >>>> [ 29%] Built target vtkLocalExample
> >>> >> >> >>> >>>> [ 29%] Built target vtkCommonMisc
> >>> >> >> >>> >>>> [ 29%] Built target vtkCommonTransforms
> >>> >> >> >>> >>>> [ 29%] Built target vtkCommonSystemCxxTests
> >>> >> >> >>> >>>> [ 29%] Python Wrapping - generating
> >>> >> >> >>> >>>> vtkAbstractArrayPython.cxx
> >>> >> >> >>> >>>> [ 29%] Built target vtkhdf5_hl
> >>> >> >> >>> >>>> Usage: vtkWrapPython-7.1 [options] infile...
> >>> >> >> >>> >>>>   --help            print this help message
> >>> >> >> >>> >>>>   --version         print the VTK version
> >>> >> >> >>> >>>>   -o <file>         the output file
> >>> >> >> >>> >>>>   -I <dir>          add an include directory
> >>> >> >> >>> >>>>   -D <macro[=def]>  define a preprocessor macro
> >>> >> >> >>> >>>>   -U <macro>        undefine a preprocessor macro
> >>> >> >> >>> >>>>   @<file>           read arguments from a file
> >>> >> >> >>> >>>>   --hints <file>    the hints file to use
> >>> >> >> >>> >>>>   --types <file>    the type hierarchy file to use
> >>> >> >> >>> >>>>   --concrete        force concrete class (ignored,
> >>> >> >> >>> >>>> deprecated)
> >>> >> >> >>> >>>>   --abstract        force abstract class (ignored,
> >>> >> >> >>> >>>> deprecated)
> >>> >> >> >>> >>>>   --vtkobject       vtkObjectBase-derived class
> (ignored,
> >>> >> >> >>> >>>> deprecated)
> >>> >> >> >>> >>>>   --special         non-vtkObjectBase class (ignored,
> >>> >> >> >>> >>>> deprecated)
> >>> >> >> >>> >>>> make[2]: *** [Wrapping/Python/
> vtkAbstractArrayPython.cxx]
> >>> >> >> >>> >>>> Error 1
> >>> >> >> >>> >>>> make[2]: *** Waiting for unfinished jobs....
> >>> >> >> >>> >>>> [ 29%] Built target vtkpython
> >>> >> >> >>> >>>> [ 29%] Python Wrapping - generating
> >>> >> >> >>> >>>> vtkAngularPeriodicDataArrayPython.cxx
> >>> >> >> >>> >>>> Usage: vtkWrapPython-7.1 [options] infile...
> >>> >> >> >>> >>>>   --help            print this help message
> >>> >> >> >>> >>>>   --version         print the VTK version
> >>> >> >> >>> >>>>   -o <file>         the output file
> >>> >> >> >>> >>>>   -I <dir>          add an include directory
> >>> >> >> >>> >>>>   -D <macro[=def]>  define a preprocessor macro
> >>> >> >> >>> >>>>   -U <macro>        undefine a preprocessor macro
> >>> >> >> >>> >>>>   @<file>           read arguments from a file
> >>> >> >> >>> >>>>   --hints <file>    the hints file to use
> >>> >> >> >>> >>>>   --types <file>    the type hierarchy file to use
> >>> >> >> >>> >>>>   --concrete        force concrete class (ignored,
> >>> >> >> >>> >>>> deprecated)
> >>> >> >> >>> >>>>   --abstract        force abstract class (ignored,
> >>> >> >> >>> >>>> deprecated)
> >>> >> >> >>> >>>>   --vtkobject       vtkObjectBase-derived class
> (ignored,
> >>> >> >> >>> >>>> deprecated)
> >>> >> >> >>> >>>>   --special         non-vtkObjectBase class (ignored,
> >>> >> >> >>> >>>> deprecated)
> >>> >> >> >>> >>>> make[2]: ***
> >>> >> >> >>> >>>> [Wrapping/Python/vtkAngularPeriodicDataArrayPython.cxx]
> >>> >> >> >>> >>>> Error 1
> >>> >> >> >>> >>>> make[1]: ***
> >>> >> >> >>> >>>> [Wrapping/Python/CMakeFiles/
> vtkCommonCorePythonD.dir/all]
> >>> >> >> >>> >>>> Error 2
> >>> >> >> >>> >>>> make[1]: *** Waiting for unfinished jobs....
> >>> >> >> >>> >>>> Scanning dependencies of target vtkCommonMathCxxTests
> >>> >> >> >>> >>>> make[2]: Warning: File
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> `Common/Math/Testing/Cxx/CMakeFiles/
> vtkCommonMathCxxTests.dir/depend.make'
> >>> >> >> >>> >>>> has modification time 0.041 s in the future
> >>> >> >> >>> >>>> [ 29%] Building CXX object
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/
> vtkCommonMathCxxTests.dir/vtkCommonMathCxxTests.cxx.o
> >>> >> >> >>> >>>> [ 29%] Building CXX object
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/
> vtkCommonMathCxxTests.dir/TestAmoebaMinimizer.cxx.o
> >>> >> >> >>> >>>> [ 30%] Built target vtkCommonCoreCxxTests
> >>> >> >> >>> >>>> [ 30%] Building CXX object
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/
> vtkCommonMathCxxTests.dir/TestMatrix3x3.cxx.o
> >>> >> >> >>> >>>> [ 30%] Building CXX object
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/
> vtkCommonMathCxxTests.dir/TestPolynomialSolversUnivariate.cxx.o
> >>> >> >> >>> >>>> [ 30%] Building CXX object
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/
> vtkCommonMathCxxTests.dir/TestQuaternion.cxx.o
> >>> >> >> >>> >>>> [ 30%] Linking CXX executable
> >>> >> >> >>> >>>> ../../../../bin/vtkCommonMathCxxTests
> >>> >> >> >>> >>>> [ 32%] Built target vtkCommonDataModel
> >>> >> >> >>> >>>> make[2]: warning:  Clock skew detected.  Your build may
> be
> >>> >> >> >>> >>>> incomplete.
> >>> >> >> >>> >>>> [ 32%] Built target vtkCommonMathCxxTests
> >>> >> >> >>> >>>> make: *** [all] Error 2
> >>> >> >> >>> >>>>
> >>> >> >> >>> >>>
> >>> >> >> >>> >>>
> >>> >> >> >>> >>> _______________________________________________
> >>> >> >> >>> >>> Powered by www.kitware.com
> >>> >> >> >>> >>>
> >>> >> >> >>> >>> Visit other Kitware open-source projects at
> >>> >> >> >>> >>> http://www.kitware.com/opensource/opensource.html
> >>> >> >> >>> >>>
> >>> >> >> >>> >>> Please keep messages on-topic and check the VTK FAQ at:
> >>> >> >> >>> >>> http://www.vtk.org/Wiki/VTK_FAQ
> >>> >> >> >>> >>>
> >>> >> >> >>> >>> Search the list archives at:
> >>> >> >> >>> >>> http://markmail.org/search/?q=vtkusers
> >>> >> >> >>> >>>
> >>> >> >> >>> >>> Follow this link to subscribe/unsubscribe:
> >>> >> >> >>> >>> http://public.kitware.com/mailman/listinfo/vtkusers
> >>> >> >> >>> >>>
> >>> >> >> >>> >>
> >>> >> >> >>> >
> >>> >> >> >>> >
> >>> >> >> >>> > _______________________________________________
> >>> >> >> >>> > Powered by www.kitware.com
> >>> >> >> >>> >
> >>> >> >> >>> > Visit other Kitware open-source projects at
> >>> >> >> >>> > http://www.kitware.com/opensource/opensource.html
> >>> >> >> >>> >
> >>> >> >> >>> > Please keep messages on-topic and check the VTK FAQ at:
> >>> >> >> >>> > http://www.vtk.org/Wiki/VTK_FAQ
> >>> >> >> >>> >
> >>> >> >> >>> > Search the list archives at:
> >>> >> >> >>> > http://markmail.org/search/?q=vtkusers
> >>> >> >> >>> >
> >>> >> >> >>> > Follow this link to subscribe/unsubscribe:
> >>> >> >> >>> > http://public.kitware.com/mailman/listinfo/vtkusers
> >>> >> >> >>> >
> >>> >> >> >>>
> >>> >> >> >>>
> >>> >> >> >>>
> >>> >> >> >>> --
> >>> >> >> >>> Cory Quammen
> >>> >> >> >>> Staff R&D Engineer
> >>> >> >> >>> Kitware, Inc.
> >>> >> >> >>
> >>> >> >> >>
> >>> >> >> >
> >>> >> >> >
> >>> >> >> > _______________________________________________
> >>> >> >> > Powered by www.kitware.com
> >>> >> >> >
> >>> >> >> > Visit other Kitware open-source projects at
> >>> >> >> > http://www.kitware.com/opensource/opensource.html
> >>> >> >> >
> >>> >> >> > Please keep messages on-topic and check the VTK FAQ at:
> >>> >> >> > http://www.vtk.org/Wiki/VTK_FAQ
> >>> >> >> >
> >>> >> >> > Search the list archives at:
> >>> >> >> > http://markmail.org/search/?q=vtkusers
> >>> >> >> >
> >>> >> >> > Follow this link to subscribe/unsubscribe:
> >>> >> >> > http://public.kitware.com/mailman/listinfo/vtkusers
> >>> >> >> >
> >>> >> >>
> >>> >> >>
> >>> >> >>
> >>> >> >> --
> >>> >> >> Cory Quammen
> >>> >> >> Staff R&D Engineer
> >>> >> >> Kitware, Inc.
> >>> >> >
> >>> >> >
> >>> >>
> >>> >>
> >>> >>
> >>> >> --
> >>> >> Cory Quammen
> >>> >> Staff R&D Engineer
> >>> >> Kitware, Inc.
> >>> >
> >>> >
> >>>
> >>>
> >>>
> >>> --
> >>> Cory Quammen
> >>> Staff R&D Engineer
> >>> Kitware, Inc.
> >>
> >>
> >
>
>
>
> --
> Cory Quammen
> Staff R&D Engineer
> Kitware, Inc.
>
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