[vtkusers] Issuings running make in my VTK-build directory
Cory Quammen
cory.quammen at kitware.com
Wed Apr 12 14:23:18 EDT 2017
Andrew,
You could try building in /tmp on the local machine. That should
eliminate the clock skew issues, then you can see if there is a
VTK-specific problem preventing the compilation. It should be a lot
faster to compile on the local disk as well.
Cory
On Wed, Apr 12, 2017 at 2:15 PM, Andrew Lam <werdna.mal222 at gmail.com> wrote:
> Cory,
>
> In my case it is, because I only have a desktop and not a laptop and we need
> to demo our projects in class. I've asked the instructor for help with the
> issue and this is the first time he's teaching the class and he hasn't built
> VTK on the school servers.
>
> Thanks,
> Andrew
>
> On Wed, Apr 12, 2017 at 11:11 AM, Cory Quammen <cory.quammen at kitware.com>
> wrote:
>>
>> Andrew,
>>
>> Typically, servers like the one on which I assume you are compiling
>> have two types of storage available:
>>
>> 1). A network file system that you can access on more than one server
>> and perhaps a personal computer. These typically hold a home directory
>> for you and may be backed up.
>>
>> 2). Local disks on the server. It is faster to access these disks
>> because they are local. As a result, at a number of computing centers
>> it is often possible to use these disks to do things like compile
>> source code. These disks are typically not backed up - think of them
>> as "scratch" paper where you do somewhat temporary work.
>>
>> Is it necessary to compile VTK on the school server? If so, I suggest
>> asking your instructor who has hopefully done that once already and
>> knows how to resolve the issue you are facing.
>>
>> HTH,
>> Cory
>>
>> On Wed, Apr 12, 2017 at 1:57 PM, Andrew Lam <werdna.mal222 at gmail.com>
>> wrote:
>> > Cory,
>> >
>> > I'm sorry I don't know what you mean by local scratch space.
>> >
>> > Thanks,
>> >
>> > Andrew
>> >
>> > On Wed, Apr 12, 2017 at 10:55 AM, Cory Quammen
>> > <cory.quammen at kitware.com>
>> > wrote:
>> >>
>> >> > I'm currently building on my school's servers.
>> >>
>> >> Is there local scratch space on which you can build software on that
>> >> server? My guess is you are building in a home directory that is on an
>> >> AFS or NFS or some other network file system, and that is causing you
>> >> problems.
>> >>
>> >> Thanks,
>> >> Cory
>> >>
>> >> > Thanks,
>> >> > Andrew
>> >> >
>> >> >
>> >> > On Wed, Apr 12, 2017 at 10:50 AM, Andrew Lam
>> >> > <werdna.mal222 at gmail.com>
>> >> > wrote:
>> >> >>
>> >> >> Cory,
>> >> >>
>> >> >> I'm currently building on my school's servers.
>> >> >>
>> >> >> Thanks,
>> >> >> Andrew
>> >> >>
>> >> >> On Wed, Apr 12, 2017 at 10:47 AM, Cory Quammen
>> >> >> <cory.quammen at kitware.com>
>> >> >> wrote:
>> >> >>>
>> >> >>> Andrew,
>> >> >>>
>> >> >>> Are you building on a networked file system of some sort? I've run
>> >> >>> into issues long ago building software before when the file system
>> >> >>> and
>> >> >>> computer have different ideas of what time it is.
>> >> >>>
>> >> >>> - Cory
>> >> >>>
>> >> >>> On Wed, Apr 12, 2017 at 1:29 PM, Andrew Lam
>> >> >>> <werdna.mal222 at gmail.com>
>> >> >>> wrote:
>> >> >>> > Hi Andy,
>> >> >>> >
>> >> >>> > It's still not working. I made a fresh build directory and ran
>> >> >>> > through
>> >> >>> > the
>> >> >>> > motions again. It still has the same issue. I've attached my
>> >> >>> > CMakeCache.txt
>> >> >>> > file from my build directory. Please let me know if you see
>> >> >>> > anything
>> >> >>> > or
>> >> >>> > if
>> >> >>> > there is any other information that you might think would help.
>> >> >>> >
>> >> >>> > Thanks,
>> >> >>> > Andrew
>> >> >>> >
>> >> >>> > On Wed, Apr 12, 2017 at 8:43 AM, Andy Bauer
>> >> >>> > <andy.bauer at kitware.com>
>> >> >>> > wrote:
>> >> >>> >>
>> >> >>> >> Hi Andrew,
>> >> >>> >>
>> >> >>> >> This should compile for you now. If it doesn't, please let us
>> >> >>> >> know
>> >> >>> >> and
>> >> >>> >> we
>> >> >>> >> can see how to get it working for you. If you do have problems I
>> >> >>> >> recommend
>> >> >>> >> attaching your CMakeCache.txt file from your build directory so
>> >> >>> >> it's
>> >> >>> >> easier
>> >> >>> >> for others to inspect what you did.
>> >> >>> >>
>> >> >>> >> Best,
>> >> >>> >> Andy
>> >> >>> >>
>> >> >>> >> On Wed, Apr 12, 2017 at 11:12 AM, Andrew Lam
>> >> >>> >> <werdna.mal222 at gmail.com>
>> >> >>> >> wrote:
>> >> >>> >>>
>> >> >>> >>> Ok Andy I can see it now thanks,
>> >> >>> >>>
>> >> >>> >>> my variables are set to
>> >> >>> >>>
>> >> >>> >>> Module_vtkParallelMPI4Py *OFF
>> >> >>> >>> PYTHON_EXECUTABLE */bin/python2
>> >> >>> >>> PYTHON_EXTRA_LIBS *
>> >> >>> >>> PYTHON_INCLUDE_DIR */usr/include/python2.7
>> >> >>> >>> PYTHON_LIBRARY *//lib64/libpython2.7.so
>> >> >>> >>> PYTHON_UTIL_LIBRARY */usr/lib64/libutil.so
>> >> >>> >>> VTK_ENABLE_VTKPYTHON *ON
>> >> >>> >>>
>> >> >>> >>> after I set VTK_WRAP_PYTHON CMake variable to ON
>> >> >>> >>>
>> >> >>> >>> it seems ok to me, but let me know if they're wrong.
>> >> >>> >>>
>> >> >>> >>> Thanks,
>> >> >>> >>> Andrew
>> >> >>> >>>
>> >> >>> >>> On Tue, Apr 11, 2017 at 3:30 PM, Andrew Lam
>> >> >>> >>> <werdna.mal222 at gmail.com>
>> >> >>> >>> wrote:
>> >> >>> >>>>
>> >> >>> >>>> Hi, my name is Andrew. I'm currently in a class that requires
>> >> >>> >>>> us
>> >> >>> >>>> to
>> >> >>> >>>> install VTK.
>> >> >>> >>>>
>> >> >>> >>>> I have an issue running make in my VTK-build directory. I get
>> >> >>> >>>> a
>> >> >>> >>>> bunch of
>> >> >>> >>>> clock skew issues that pop up that won't go away after calling
>> >> >>> >>>>
>> >> >>> >>>> $ touch *
>> >> >>> >>>>
>> >> >>> >>>> then it will print out
>> >> >>> >>>>
>> >> >>> >>>> make[2]: ***
>> >> >>> >>>> [Wrapping/Python/vtkAngularPeriodicDataArrayPython.cxx]
>> >> >>> >>>> Error 1
>> >> >>> >>>> make[1]: ***
>> >> >>> >>>> [Wrapping/Python/CMakeFiles/vtkCommonCorePythonD.dir/all]
>> >> >>> >>>> Error 2
>> >> >>> >>>>
>> >> >>> >>>> it will then run to about 32% and then end printing
>> >> >>> >>>>
>> >> >>> >>>> make: *** [all] Error 2
>> >> >>> >>>>
>> >> >>> >>>> I'm using python 2.7, VTK 7.1.1, cmake 3.7.2
>> >> >>> >>>> I'm also going to include the output of the make call. Please
>> >> >>> >>>> let
>> >> >>> >>>> me
>> >> >>> >>>> know if you have any suggestions or if you need any more
>> >> >>> >>>> information
>> >> >>> >>>> to
>> >> >>> >>>> understand the issue.
>> >> >>> >>>>
>> >> >>> >>>> [ 0%] Built target kwiml_test
>> >> >>> >>>> [ 0%] Built target vtksys
>> >> >>> >>>> [ 1%] Built target vtkWrappingTools
>> >> >>> >>>> [ 1%] Built target vtkalglib
>> >> >>> >>>> [ 1%] Built target vtkexpat
>> >> >>> >>>> [ 2%] Built target vtkzlib
>> >> >>> >>>> [ 2%] Built target vtkDICOMParser
>> >> >>> >>>> [ 2%] Built target vtkEncodeString
>> >> >>> >>>> [ 2%] Built target vtkjpeg
>> >> >>> >>>> [ 2%] Built target vtkHashSource
>> >> >>> >>>> [ 2%] Built target vtkglew
>> >> >>> >>>> [ 2%] Built target H5make_libsettings
>> >> >>> >>>> [ 2%] Built target H5detect
>> >> >>> >>>> [ 2%] Built target vtkWrapTcl
>> >> >>> >>>> [ 2%] Built target vtkParseJava
>> >> >>> >>>> [ 2%] Built target vtkWrapPython
>> >> >>> >>>> [ 2%] Built target vtkWrapPythonInit
>> >> >>> >>>> [ 2%] Built target vtkWrapTclInit
>> >> >>> >>>> [ 2%] Built target vtkWrapJava
>> >> >>> >>>> [ 2%] Built target vtkjsoncpp
>> >> >>> >>>> [ 2%] Built target verdict
>> >> >>> >>>> [ 2%] Built target vtksqlite
>> >> >>> >>>> [ 2%] Built target vtkoggtheora
>> >> >>> >>>> [ 2%] Built target vtkWrapHierarchy
>> >> >>> >>>> [ 4%] Built target vtkproj4
>> >> >>> >>>> [ 4%] Built target vtkfreetype
>> >> >>> >>>> [ 5%] Built target vtklibxml2
>> >> >>> >>>> [ 5%] Built target vtkpng
>> >> >>> >>>> [ 5%] Built target vtkmetaio
>> >> >>> >>>> [ 5%] Built target vtkgl2ps
>> >> >>> >>>> [ 5%] Built target vtktiff
>> >> >>> >>>> [ 20%] Built target vtkCommonCore
>> >> >>> >>>> [ 26%] Built target VTKData
>> >> >>> >>>> [ 28%] Built target vtkCommonSystem
>> >> >>> >>>> [ 29%] Built target vtkCommonMath
>> >> >>> >>>> [ 29%] Built target vtkhdf5
>> >> >>> >>>> [ 29%] Built target vtkWrappingPythonCore
>> >> >>> >>>> [ 29%] Built target vtkLocalExample
>> >> >>> >>>> [ 29%] Built target vtkCommonMisc
>> >> >>> >>>> [ 29%] Built target vtkCommonTransforms
>> >> >>> >>>> [ 29%] Built target vtkCommonSystemCxxTests
>> >> >>> >>>> [ 29%] Python Wrapping - generating vtkAbstractArrayPython.cxx
>> >> >>> >>>> [ 29%] Built target vtkhdf5_hl
>> >> >>> >>>> Usage: vtkWrapPython-7.1 [options] infile...
>> >> >>> >>>> --help print this help message
>> >> >>> >>>> --version print the VTK version
>> >> >>> >>>> -o <file> the output file
>> >> >>> >>>> -I <dir> add an include directory
>> >> >>> >>>> -D <macro[=def]> define a preprocessor macro
>> >> >>> >>>> -U <macro> undefine a preprocessor macro
>> >> >>> >>>> @<file> read arguments from a file
>> >> >>> >>>> --hints <file> the hints file to use
>> >> >>> >>>> --types <file> the type hierarchy file to use
>> >> >>> >>>> --concrete force concrete class (ignored, deprecated)
>> >> >>> >>>> --abstract force abstract class (ignored, deprecated)
>> >> >>> >>>> --vtkobject vtkObjectBase-derived class (ignored,
>> >> >>> >>>> deprecated)
>> >> >>> >>>> --special non-vtkObjectBase class (ignored,
>> >> >>> >>>> deprecated)
>> >> >>> >>>> make[2]: *** [Wrapping/Python/vtkAbstractArrayPython.cxx]
>> >> >>> >>>> Error 1
>> >> >>> >>>> make[2]: *** Waiting for unfinished jobs....
>> >> >>> >>>> [ 29%] Built target vtkpython
>> >> >>> >>>> [ 29%] Python Wrapping - generating
>> >> >>> >>>> vtkAngularPeriodicDataArrayPython.cxx
>> >> >>> >>>> Usage: vtkWrapPython-7.1 [options] infile...
>> >> >>> >>>> --help print this help message
>> >> >>> >>>> --version print the VTK version
>> >> >>> >>>> -o <file> the output file
>> >> >>> >>>> -I <dir> add an include directory
>> >> >>> >>>> -D <macro[=def]> define a preprocessor macro
>> >> >>> >>>> -U <macro> undefine a preprocessor macro
>> >> >>> >>>> @<file> read arguments from a file
>> >> >>> >>>> --hints <file> the hints file to use
>> >> >>> >>>> --types <file> the type hierarchy file to use
>> >> >>> >>>> --concrete force concrete class (ignored, deprecated)
>> >> >>> >>>> --abstract force abstract class (ignored, deprecated)
>> >> >>> >>>> --vtkobject vtkObjectBase-derived class (ignored,
>> >> >>> >>>> deprecated)
>> >> >>> >>>> --special non-vtkObjectBase class (ignored,
>> >> >>> >>>> deprecated)
>> >> >>> >>>> make[2]: ***
>> >> >>> >>>> [Wrapping/Python/vtkAngularPeriodicDataArrayPython.cxx]
>> >> >>> >>>> Error 1
>> >> >>> >>>> make[1]: ***
>> >> >>> >>>> [Wrapping/Python/CMakeFiles/vtkCommonCorePythonD.dir/all]
>> >> >>> >>>> Error 2
>> >> >>> >>>> make[1]: *** Waiting for unfinished jobs....
>> >> >>> >>>> Scanning dependencies of target vtkCommonMathCxxTests
>> >> >>> >>>> make[2]: Warning: File
>> >> >>> >>>>
>> >> >>> >>>>
>> >> >>> >>>>
>> >> >>> >>>> `Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/depend.make'
>> >> >>> >>>> has modification time 0.041 s in the future
>> >> >>> >>>> [ 29%] Building CXX object
>> >> >>> >>>>
>> >> >>> >>>>
>> >> >>> >>>>
>> >> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/vtkCommonMathCxxTests.cxx.o
>> >> >>> >>>> [ 29%] Building CXX object
>> >> >>> >>>>
>> >> >>> >>>>
>> >> >>> >>>>
>> >> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/TestAmoebaMinimizer.cxx.o
>> >> >>> >>>> [ 30%] Built target vtkCommonCoreCxxTests
>> >> >>> >>>> [ 30%] Building CXX object
>> >> >>> >>>>
>> >> >>> >>>>
>> >> >>> >>>>
>> >> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/TestMatrix3x3.cxx.o
>> >> >>> >>>> [ 30%] Building CXX object
>> >> >>> >>>>
>> >> >>> >>>>
>> >> >>> >>>>
>> >> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/TestPolynomialSolversUnivariate.cxx.o
>> >> >>> >>>> [ 30%] Building CXX object
>> >> >>> >>>>
>> >> >>> >>>>
>> >> >>> >>>>
>> >> >>> >>>> Common/Math/Testing/Cxx/CMakeFiles/vtkCommonMathCxxTests.dir/TestQuaternion.cxx.o
>> >> >>> >>>> [ 30%] Linking CXX executable
>> >> >>> >>>> ../../../../bin/vtkCommonMathCxxTests
>> >> >>> >>>> [ 32%] Built target vtkCommonDataModel
>> >> >>> >>>> make[2]: warning: Clock skew detected. Your build may be
>> >> >>> >>>> incomplete.
>> >> >>> >>>> [ 32%] Built target vtkCommonMathCxxTests
>> >> >>> >>>> make: *** [all] Error 2
>> >> >>> >>>>
>> >> >>> >>>
>> >> >>> >>>
>> >> >>> >>> _______________________________________________
>> >> >>> >>> Powered by www.kitware.com
>> >> >>> >>>
>> >> >>> >>> Visit other Kitware open-source projects at
>> >> >>> >>> http://www.kitware.com/opensource/opensource.html
>> >> >>> >>>
>> >> >>> >>> Please keep messages on-topic and check the VTK FAQ at:
>> >> >>> >>> http://www.vtk.org/Wiki/VTK_FAQ
>> >> >>> >>>
>> >> >>> >>> Search the list archives at:
>> >> >>> >>> http://markmail.org/search/?q=vtkusers
>> >> >>> >>>
>> >> >>> >>> Follow this link to subscribe/unsubscribe:
>> >> >>> >>> http://public.kitware.com/mailman/listinfo/vtkusers
>> >> >>> >>>
>> >> >>> >>
>> >> >>> >
>> >> >>> >
>> >> >>> > _______________________________________________
>> >> >>> > Powered by www.kitware.com
>> >> >>> >
>> >> >>> > Visit other Kitware open-source projects at
>> >> >>> > http://www.kitware.com/opensource/opensource.html
>> >> >>> >
>> >> >>> > Please keep messages on-topic and check the VTK FAQ at:
>> >> >>> > http://www.vtk.org/Wiki/VTK_FAQ
>> >> >>> >
>> >> >>> > Search the list archives at:
>> >> >>> > http://markmail.org/search/?q=vtkusers
>> >> >>> >
>> >> >>> > Follow this link to subscribe/unsubscribe:
>> >> >>> > http://public.kitware.com/mailman/listinfo/vtkusers
>> >> >>> >
>> >> >>>
>> >> >>>
>> >> >>>
>> >> >>> --
>> >> >>> Cory Quammen
>> >> >>> Staff R&D Engineer
>> >> >>> Kitware, Inc.
>> >> >>
>> >> >>
>> >> >
>> >> >
>> >> > _______________________________________________
>> >> > Powered by www.kitware.com
>> >> >
>> >> > Visit other Kitware open-source projects at
>> >> > http://www.kitware.com/opensource/opensource.html
>> >> >
>> >> > Please keep messages on-topic and check the VTK FAQ at:
>> >> > http://www.vtk.org/Wiki/VTK_FAQ
>> >> >
>> >> > Search the list archives at: http://markmail.org/search/?q=vtkusers
>> >> >
>> >> > Follow this link to subscribe/unsubscribe:
>> >> > http://public.kitware.com/mailman/listinfo/vtkusers
>> >> >
>> >>
>> >>
>> >>
>> >> --
>> >> Cory Quammen
>> >> Staff R&D Engineer
>> >> Kitware, Inc.
>> >
>> >
>>
>>
>>
>> --
>> Cory Quammen
>> Staff R&D Engineer
>> Kitware, Inc.
>
>
--
Cory Quammen
Staff R&D Engineer
Kitware, Inc.
More information about the vtkusers
mailing list