[vtkusers] Error compiling vtkInfovisParallel / vtkPBGLBreadtFirstSearch.cxx (VTK 6.1.0)
Jeff Baumes
jeff.baumes at kitware.com
Mon Jun 16 07:32:19 EDT 2014
Looks to me like you caught a bug. This does indeed sometimes go off the
end of the array, but the potential junk data it gets is always multiplied
with an alpha value of 0, so the algorithm still functions properly. It
seems this code may not currently be tested in an environment with runtime
bounds-checking exceptions. Modifiying the loop with an additional check
may resolve the problem (though on my Mac I am not getting the runtime
error even though it was going past the end of the array):
for (vtkIdType e = 0; e < numEdges; ++e)
{
for (int m = 0; m < newMeshCount; ++m)
{
float indexFloat = (this->MeshCount - 1.0f)*m/(newMeshCount - 1.0f);
int index = static_cast<int>(indexFloat);
float alpha = indexFloat - index;
vtkVector3f before = this->EdgeMesh[e][index];
if (alpha > 0)
{
vtkVector3f after = this->EdgeMesh[e][index+1];
newEdgeMesh[e][m] = before + alpha*(after - before);
}
else
{
newEdgeMesh[e][m] = before;
}
}
}
Let me know if this works for you and we can get a fix into VTK.
Jeff
On Mon, Jun 16, 2014 at 6:00 AM, Martijn Steenwijk <
martijnsteenwijk at gmail.com> wrote:
> To add on that. It seems that LayoutEdgePoints() is in its first iteration
> (so i is 0 at line 530) - this is right after initializeedgemesh().
>
> Best,
> Martijn
>
>
> On Mon, Jun 16, 2014 at 11:52 AM, Martijn Steenwijk <
> martijnsteenwijk at gmail.com> wrote:
>
>>
>> Hi Jeff,
>>
>> You're right. At first glance I thought that too, but then got a linker
>> error message which was (after second reading) not related to VTK. Sorry, I
>> should have looked better.
>>
>> Now it does compile, but I'm getting another error on calling Update()
>> of vtkBoostDividedEdgeBundling: I use the same graph as in the
>> TestBoostDividedEdgeBundling:
>>
>> graph->AddVertex();
>> points->InsertNextPoint(20, 40, 0);
>> graph->AddVertex();
>> points->InsertNextPoint(20, 80, 0);
>> graph->AddVertex();
>> points->InsertNextPoint(20, 120, 0);
>> graph->AddVertex();
>> points->InsertNextPoint(20, 160, 0);
>> graph->AddVertex();
>> points->InsertNextPoint(380, 40, 0);
>> graph->AddVertex();
>> points->InsertNextPoint(380, 80, 0);
>> graph->AddVertex();
>> points->InsertNextPoint(380, 120, 0);
>> graph->AddVertex();
>> points->InsertNextPoint(380, 160, 0);
>> graph->SetPoints(points.GetPointer());
>>
>> graph->AddEdge(0, 4);
>> graph->AddEdge(0, 5);
>> graph->AddEdge(1, 4);
>> graph->AddEdge(1, 5);
>> graph->AddEdge(2, 6);
>> graph->AddEdge(2, 7);
>> graph->AddEdge(3, 6);
>> graph->AddEdge(3, 7);
>>
>> graph->AddEdge(4, 0);
>> graph->AddEdge(5, 0);
>> graph->AddEdge(6, 0);
>>
>> Then a "vector subscript out of range" is thrown at line 368 of
>> vtkBoostDividedEdgeBundling.cxx (see image):
>> [image: Inline image 2]
>>
>> it tries to get this->EdgeMesh[e][index+1] where e=0 and index=1 (so
>> element [0][2] is requested), but this->EdgeMesh[e] has length 2.
>>
>> Any thoughts how this can be solved?
>>
>> Best,
>> Martijn
>>
>>
>>
>>
>> On Mon, Jun 16, 2014 at 3:49 AM, Jeff Baumes <jeff.baumes at kitware.com>
>> wrote:
>>
>>> You should not need to turn on the vtkInfovisParallel module to compile
>>> vtkBoostDividedEdgeBundling. You should be able to just turn
>>> vtkInfovisBoostGraphAlgorithms on.
>>>
>>> Jeff
>>>
>>>
>>> On Sat, Jun 14, 2014 at 4:38 AM, Martijn Steenwijk <
>>> martijnsteenwijk at gmail.com> wrote:
>>>
>>>> Hi David,
>>>>
>>>> Thanks for your response. I'm building this module because I would like
>>>> to use vtkBoostDevidedEdgeBundling which seems to rely on this module (i.e.
>>>> If I do not compile the module I get a linker error). Or am I doing
>>>> something wrong?
>>>>
>>>> Is there any quick fix for this?
>>>>
>>>> Thanks for your response,
>>>> Martijn
>>>>
>>>> Verstuurd vanaf mijn iPhone
>>>>
>>>> Op 14 jun. 2014 om 00:55 heeft David E DeMarle <
>>>> dave.demarle at kitware.com> het volgende geschreven:
>>>>
>>>> I had that compiling with boost 1.48 on one of the dashboard machines a
>>>> while back.
>>>>
>>>> The module itself hasn't been maintained in a long while and thus I
>>>> marked it as deprecated in master a few months back. If there is interest
>>>> in it from the community and someone brings it up to date with current
>>>> boost and supply tests for the module, I can undeprecate it before 6.2.
>>>>
>>>>
>>>>
>>>>
>>>> David E DeMarle
>>>> Kitware, Inc.
>>>> R&D Engineer
>>>> 21 Corporate Drive
>>>> Clifton Park, NY 12065-8662
>>>> Phone: 518-881-4909
>>>>
>>>>
>>>> On Fri, Jun 13, 2014 at 5:51 PM, Martijn Steenwijk <
>>>> martijnsteenwijk at gmail.com> wrote:
>>>>
>>>>> Hi all,
>>>>>
>>>>> I'm trying to compile VTK 6.1.0 on Windows (MSVC 2010) with Boost
>>>>> 1.55.0 and openmpi 1.6.2. I'm getting an error while compiling
>>>>> vtkInfovisParallel / vtkPBGLBreadtFirstSearch.cxx. as listed below. It
>>>>> seems that Boost misses some properties. Could this be related to the Boost
>>>>> version (if so, what could be used best?)
>>>>>
>>>>> Any help would be appreciated.
>>>>>
>>>>> Best,
>>>>> Martijn
>>>>>
>>>>> D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>> error C2039: 'ref' : is not a member of
>>>>> 'boost::detail::error_property_not_found'
>>>>> 94>
>>>>> D:\libs\boost_1_55_0\boost/pending/detail/property.hpp(16) : see
>>>>> declaration of 'boost::detail::error_property_not_found'
>>>>> 94>
>>>>> ..\..\..\Infovis\Parallel\vtkPBGLBreadthFirstSearch.cxx(365) : see
>>>>> reference to function template instantiation 'void
>>>>> boost::detail::parallel_bfs_helper<vtkDirectedGraph*,DistributedColorMap,pbgl_bfs_distance_recorder<DistanceMap>,boost::detail::error_property_not_found,boost::vtkGraphIndexMap>(DistributedGraph
>>>>> &,boost::graph_traits<vtkGraph*>::vertex_descriptor,ColorMap,BFSVisitor,BufferRef,VertexIndexMap)'
>>>>> being compiled
>>>>> 94> with
>>>>> 94> [
>>>>> 94> DistanceMap=DistributedDistanceMap,
>>>>> 94> DistributedGraph=vtkDirectedGraph *,
>>>>> 94> ColorMap=DistributedColorMap,
>>>>> 94>
>>>>> BFSVisitor=pbgl_bfs_distance_recorder<DistributedDistanceMap>,
>>>>> 94> BufferRef=boost::detail::error_property_not_found,
>>>>> 94> VertexIndexMap=boost::vtkGraphIndexMap
>>>>> 94> ]
>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>> &,graph_traits<G>::vertex_descriptor,const
>>>>> boost::bgl_named_params<T,Tag,Base> &)' : expects 3 arguments - 5 provided
>>>>> 94>
>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(334) : see
>>>>> declaration of 'boost::breadth_first_search'
>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>> &,SourceIterator,SourceIterator,Buffer &,BFSVisitor,ColorMap)' : expects 6
>>>>> arguments - 5 provided
>>>>> 94>
>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(112) : see
>>>>> declaration of 'boost::breadth_first_search'
>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>> error C2039: 'ref' : is not a member of
>>>>> 'boost::detail::error_property_not_found'
>>>>> 94>
>>>>> D:\libs\boost_1_55_0\boost/pending/detail/property.hpp(16) : see
>>>>> declaration of 'boost::detail::error_property_not_found'
>>>>> 94>
>>>>> ..\..\..\Infovis\Parallel\vtkPBGLBreadthFirstSearch.cxx(373) : see
>>>>> reference to function template instantiation 'void
>>>>> boost::detail::parallel_bfs_helper<vtkUndirectedGraph*,DistributedColorMap,pbgl_bfs_distance_recorder<DistanceMap>,boost::detail::error_property_not_found,boost::vtkGraphIndexMap>(DistributedGraph
>>>>> &,boost::graph_traits<vtkGraph*>::vertex_descriptor,ColorMap,BFSVisitor,BufferRef,VertexIndexMap)'
>>>>> being compiled
>>>>> 94> with
>>>>> 94> [
>>>>> 94> DistanceMap=DistributedDistanceMap,
>>>>> 94> DistributedGraph=vtkUndirectedGraph *,
>>>>> 94> ColorMap=DistributedColorMap,
>>>>> 94>
>>>>> BFSVisitor=pbgl_bfs_distance_recorder<DistributedDistanceMap>,
>>>>> 94> BufferRef=boost::detail::error_property_not_found,
>>>>> 94> VertexIndexMap=boost::vtkGraphIndexMap
>>>>> 94> ]
>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>> &,graph_traits<G>::vertex_descriptor,const
>>>>> boost::bgl_named_params<T,Tag,Base> &)' : expects 3 arguments - 5 provided
>>>>> 94>
>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(334) : see
>>>>> declaration of 'boost::breadth_first_search'
>>>>> 94>D:\libs\boost_1_55_0\boost/graph/distributed/breadth_first_search.hpp(111):
>>>>> error C2780: 'void boost::breadth_first_search(const VertexListGraph
>>>>> &,SourceIterator,SourceIterator,Buffer &,BFSVisitor,ColorMap)' : expects 6
>>>>> arguments - 5 provided
>>>>> 94>
>>>>> D:\libs\boost_1_55_0\boost/graph/breadth_first_search.hpp(112) : see
>>>>> declaration of 'boost::breadth_first_search'
>>>>> 108>------ Build started: Project: ALL_BUILD, Configuration: Debug
>>>>> Win32 ------
>>>>> 108> Build all projects
>>>>> ========== Build: 105 succeeded, 3 failed, 24 up-to-date, 0 skipped
>>>>> ==========
>>>>>
>>>>>
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>>>>
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>>>> Powered by www.kitware.com
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>>>> Visit other Kitware open-source projects at
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