[vtkusers] VTK 6.1 on Mac: from JDK 6 to JDK 8, compilation notes and changes in window handling
Alexandre Dufour
adufour at pasteur.fr
Wed Apr 9 15:49:39 EDT 2014
Thanks Sebastien for the fast and detailed answer.
Indeed it seemed to me like a known issue (especially the light / heavy weight one), but my searches didn't bring me far enough I guess.
Will switch to OpenGL panels as soon as possible!
Alexandre
> On 9 avr. 2014, at 20:09, Sebastien Jourdain <sebastien.jourdain at kitware.com> wrote:
>
> Hi Alexandre,
>
> So your problem is a somewhat well known issue. Basically Oracle Java 7 and 8 changed their API with the Cocoa code which break the old rendering technique used for Java.
> To overcome that issue we provide a vtkJoglPanel / vtkJoglCanvas where VTK handle the OpenGL code and we let the JOGL code do the graphical integration.
>
> To enable them, you will need to get JOGL and build VTK with it with additional options and paths.
> But we are in the process of providing binaries of VTK for each platform in an automatic manner. Unfortunately that process is not complete yet, but you can download those binaries from the web by going to the VTK dashboard (http://open.cdash.org/index.php?project=VTK) and downloading the generated files by clicking on the yellow box.
>
> Also another known issue is that altair.kitware does not properly compile the Java files, which means that it's generic vtk-6.0.1.jar does not contains any class files.
> But you can get that same file from any other platform.
>
> Here is how you can try those binaries:
>
> # Use maven to download the JOGL dependencies
> $ mvn org.apache.maven.plugins:maven-dependency-plugin:2.1:get -DrepoUrl=http://repo1.maven.org/maven2 -Dartifact=org.jogamp.gluegen:gluegen-rt:2.0.2
> $ mvn org.apache.maven.plugins:maven-dependency-plugin:2.1:get -DrepoUrl=http://repo1.maven.org/maven2 -Dartifact=org.jogamp.jogl:jogl-all:2.0.2
>
> 1) Download and uncompress the native jar into a /.../lib directory.
> 2) export DYLD_LIBRARY_PATH=/.../lib
> 3) java -cp vtk-6.1.jar:/Users/seb/.m2/repository/org/jogamp/jogl/jogl-all/2.0.2/jogl-all-2.0.2.jar:/Users/seb/.m2/repository/org/jogamp/gluegen/gluegen-rt/2.0.2/gluegen-rt-2.0.2.jar vtk.sample.rendering.JoglConeRendering
>
> Hope that helps,
>
> Seb
>
>
>> On Wed, Apr 9, 2014 at 12:32 PM, Alexandre Dufour <adufour at pasteur.fr> wrote:
>> Hi everyone,
>>
>> We are using VTK via Java for 3D rendering purposes in the open-source Icy platform for bioimaging (http://icy.bioimageanalysis.org), and it has been a great experience so far (especially on Windows). Less so on Mac however, mostly due to Apple’s custom JVM implementation (1.6) messing with the lightweight/heavyweight thingy, and the dramatic changes when switching to Java 1.8 (Oracle).
>>
>> — The story starts when compiling VTK with Java bindings (after I installed Oracle’s JDK 8 on Mavericks 10.9.2, Xcode 5.1). At runtime, vtk viewers that used to work under JDK 6 suddenly cause a bad crash (note that this also happened with Oracle’s JDK 7):
>> _NSJVMLoadLibrary: NSAddLibrary failed for /libjawt.dylib
>> JavaVM FATAL: lookup of function JAWT_GetAWT failed. Exit
>>
>> — I figured VTK probably wasn’t properly talking to JDK 8, and noticed in CMakeLists that the JAVA_XXX flags were pointing to some weird bits of Java frameworks inside Xcode (in a MacOS10.9 resource bundle), therefore I changed them to:
>> JAVA_AWT_INCLUDE_PATH /Library/Java/JavaVirtualMachines/jdk1.8.0.jdk/Contents/Home/include
>> JAVA_AWT_LIBRARY /Library/Java/JavaVirtualMachines/jdk1.8.0.jdk/Contents/Home/jre/lib/libjawt.dylib
>> JAVA_INCLUDE_PATH /Library/Java/JavaVirtualMachines/jdk1.8.0.jdk/Contents/Home/include
>> JAVA_INCLUDE_PATH2 /Library/Java/JavaVirtualMachines/jdk1.8.0.jdk/Contents/Home/include/darwin
>>
>> — This change wouldn’t compile anymore, due to the following line (appears twice in Wrapping/Java/vtkJavaAwt.h):
>> temp0->SetWindowId(dsi_mac->cocoaViewRef);
>> (problem: the cocoaViewRef field does not exist anymore). Commenting this line however resumes compilation (but could cause the issue below).
>>
>> — Once compiled, I took the sample code from this web site: http://www.particleincell.com/blog/2011/vtk-java-visualization/. Here is the outcome:
>>
>> — — Under JDK 6: the vtk panel nicely sits “inside” the main frame, where it is supposed to be (expected behaviour).
>>
>> — — Under JDK 8, the vtk panel opens in a new (native Mac) window entitled “Visualization Toolkit - Cocoa #1”, while the main frame sits there with all other UI components, except the center zone is empty (it is like “sucked away” into the native window:)). Additionally, the Apple toolkit at runtime is complaining with the following console warning:
>>
>> 2014-04-09 19:05:10.178 java[2935:790f] Cocoa AWT: Not running on AppKit thread 0 when expected. (
>> 0 libawt_lwawt.dylib 0x00000001255c3887 -[AWTWindow windowDidResignKey:] + 40
>> 1 CoreFoundation 0x00007fff90f8ce0c __CFNOTIFICATIONCENTER_IS_CALLING_OUT_TO_AN_OBSERVER__ + 12
>> 2 CoreFoundation 0x00007fff90e80a6d _CFXNotificationPost + 2893
>> 3 Foundation 0x00007fff862bb7ba -[NSNotificationCenter postNotificationName:object:userInfo:] + 68
>> 4 AppKit 0x00007fff89156760 -[NSWindow resignKeyWindow] + 702
>> 5 AppKit 0x00007fff8905b363 -[NSWindow _changeKeyAndMainLimitedOK:] + 768
>> 6 AppKit 0x00007fff89053856 -[NSWindow _makeKeyRegardlessOfVisibility] + 100
>> 7 AppKit 0x00007fff890537c0 -[NSWindow makeKeyAndOrderFront:] + 29
>> 8 libvtkRenderingOpenGL.jnilib 0x000000012c854d71 _ZN20vtkCocoaRenderWindow13CreateAWindowEv + 2113
>> 9 libvtkRenderingOpenGL.jnilib 0x000000012c855af8 _ZN20vtkCocoaRenderWindow10InitializeEv + 344
>> 10 libvtkRenderingOpenGL.jnilib 0x000000012c851e6d _ZN20vtkCocoaRenderWindow5StartEv + 29
>> 11 libvtkRenderingCore.jnilib 0x0000000129db9fad _ZN15vtkRenderWindow14DoStereoRenderEv + 29
>> 12 libvtkRenderingCore.jnilib 0x0000000129db9f6c _ZN15vtkRenderWindow10DoFDRenderEv + 1612
>> 13 libvtkRenderingCore.jnilib 0x0000000129db98fd _ZN15vtkRenderWindow10DoAARenderEv + 1837
>> 14 libvtkRenderingCore.jnilib 0x0000000129db8ec2 _ZN15vtkRenderWindow6RenderEv + 2418
>> 15 libvtkRenderingCoreJava.jnilib 0x0000000129b2f291 Java_vtk_vtkRenderWindow_Render_19 + 49
>> 16 ??? 0x000000010ec0a66e 0x0 + 4542473838
>> 17 ??? 0x000000010ebfd2e0 0x0 + 4542419680
>>
>>
>> In both cases, the viewers behave identically.
>>
>> I apologise for the long post, but I assume this is sufficiently complete to describe and reproduce the problem.
>> Has anyone experienced this lately? Any hints on why the behaviour is different? I could not find any similar issue on the forum…
>>
>> Many thanks for your attention, and looking forward to updates on the Mac port!
>>
>> Best wishes
>> Alexandre
>>
>> ---
>> Alexandre Dufour, Ph.D.
>> Institut Pasteur - Bio Image Analysis Group
>> 25, rue du Docteur Roux, Paris, France
>> Research: http://www.bioimageanalysis.org/dufour
>> Software: http://icy.bioimageanalysis.org
>>
>>
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