[vtkusers] Volume Data
Dženan Zukić
dzenanz at gmail.com
Tue Sep 3 08:31:12 EDT 2013
Volume data is an image with 3 dimensions, such as from MRI and CT scanners.
On Tue, Sep 3, 2013 at 1:34 PM, david bahn <bahndavid2006 at gmail.com> wrote:
> Hi,
> I just want to ask you, what is meaning of volume data in images.
>
> David
>
>
>
>
>
>
> On Mon, Sep 2, 2013 at 6:00 PM, <vtkusers-request at vtk.org> wrote:
>
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>> Today's Topics:
>>
>> 1. VTK 6.0 and .NET Wrapper (fasth)
>> 2. volume rendering (R R)
>> 3. Triangulation (R R)
>> 4. Finding Distance (safna)
>> 5. Fwd: Finding Distance (safna)
>> 6. Re: plot a huge amount of spheres (curator)
>> 7. Re: Fwd: Finding Distance (Max)
>> 8. Re: VTK 6.0 and .NET Wrapper (Max)
>> 9. Re: Volume Outline on the surface (david bahn)
>> 10. Re: Volume Outline on the surface (Bill Lorensen)
>> 11. Re: Fwd: Finding Distance (safna)
>> 12. Re: Fwd: Finding Distance (Bill Lorensen)
>> 13. Libraries (Altamash Abbasi)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Sun, 1 Sep 2013 13:28:20 -0700 (PDT)
>> From: fasth <in307 at yandex.ru>
>> Subject: [vtkusers] VTK 6.0 and .NET Wrapper
>> To: vtkusers at vtk.org
>> Message-ID: <1378067300513-5723190.post at n5.nabble.com>
>> Content-Type: text/plain; charset=us-ascii
>>
>> As I founded last version of .NET wrapper is for VTK 5.8.
>> Is there any way to use VTK 6.0 in .NET?
>> Are you going to continue support of .NET of its done and 5.8 is
>> considered
>> to be last?
>>
>> Thanks.
>>
>>
>>
>> --
>> View this message in context:
>> http://vtk.1045678.n5.nabble.com/VTK-6-0-and-NET-Wrapper-tp5723190.html
>> Sent from the VTK - Users mailing list archive at Nabble.com.
>>
>>
>> ------------------------------
>>
>> Message: 2
>> Date: Sun, 1 Sep 2013 16:13:45 -0700 (PDT)
>> From: R R <rrane at rocketmail.com>
>> Subject: [vtkusers] volume rendering
>> To: "vtkusers at vtk.org" <vtkusers at vtk.org>
>> Message-ID:
>> <1378077225.40691.YahooMailNeo at web162804.mail.bf1.yahoo.com>
>> Content-Type: text/plain; charset="us-ascii"
>>
>> Hello everybody,
>>
>> I'm having a problem with volume rendering. I have a 100*100*100 matrix.
>> I have the RGB and opacity values corresponding to each voxel. But I don't
>> know how to visualize my data using vtk. Could you please help me with that?
>>
>> I have searched but I see that in most cases mappers and filters are used
>> to generate the volume from a surface. But in my case I have a whole data
>> and want to just visualize it. Any advise?
>>
>> Any help and information will be greatly appreciated.
>>
>> Thank you,
>> Rane
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>> ------------------------------
>>
>> Message: 3
>> Date: Sun, 1 Sep 2013 23:32:07 -0700 (PDT)
>> From: R R <rrane at rocketmail.com>
>> Subject: [vtkusers] Triangulation
>> To: "vtkusers at vtk.org" <vtkusers at vtk.org>
>> Message-ID:
>> <1378103527.18013.YahooMailNeo at web162806.mail.bf1.yahoo.com>
>> Content-Type: text/plain; charset="us-ascii"
>>
>> Hello everybody,
>>
>> I've used Delaunay2D on a point cloud data of a face to create a
>> triangulated mesh but the result doesn't look good. Could any body please
>> help me why the result look like this? (I have attached an image of the
>> result)
>>
>> Any help will be greatly appreciated!
>>
>> Thank you so much,
>> Rane
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>> ------------------------------
>>
>> Message: 4
>> Date: Mon, 2 Sep 2013 15:02:27 +0530
>> From: safna <safna.royal10 at gmail.com>
>> Subject: [vtkusers] Finding Distance
>> To: vtkusers at vtk.org
>> Message-ID:
>> <
>> CAC0f8ZSEa-jHgWZxqXp-h7TLwR1wjuoZ+enr-qTYfGgNK4c6Gg at mail.gmail.com>
>> Content-Type: text/plain; charset="iso-8859-1"
>>
>> Dear All,
>>
>>
>>
>> how to find the distance between two object in vtk??
>> like a line source and sphere source...how can i get the closest distance
>> between two objects
>>
>>
>>
>> Thank you,
>>
>>
>> Safna
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>> ------------------------------
>>
>> Message: 5
>> Date: Mon, 2 Sep 2013 16:10:41 +0530
>> From: safna <safna.royal10 at gmail.com>
>> Subject: [vtkusers] Fwd: Finding Distance
>> To: vtkusers at vtk.org
>> Message-ID:
>> <
>> CAC0f8ZQxOOd+FATW_i5Bh1eB7CXeuQW3ON0HEFDYBz_M9MN5MA at mail.gmail.com>
>> Content-Type: text/plain; charset="iso-8859-1"
>>
>> ---------- Forwarded message ----------
>> From: safna <safna.royal10 at gmail.com>
>> Date: Mon, Sep 2, 2013 at 3:02 PM
>> Subject: Finding Distance
>> To: vtkusers at vtk.org
>>
>>
>>
>> Dear All,
>>
>>
>>
>> how to find the distance between two object in vtk??
>> like a line source and sphere source...how can i get the closest distance
>> between two objects and the minimum distance points in two objects...
>>
>>
>>
>> Thank you,
>>
>>
>> Safna
>>
>>
>>
>>
>>
>> --
>>
>> Keep Smiling !!!
>>
>>
>> safna
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>> ------------------------------
>>
>> Message: 6
>> Date: Mon, 02 Sep 2013 13:25:29 +0200
>> From: curator <curator at gmx.de>
>> Subject: Re: [vtkusers] plot a huge amount of spheres
>> To: vtkusers at vtk.org
>> Message-ID: <522475A9.9010306 at gmx.de>
>> Content-Type: text/plain; charset="iso-8859-1"; Format="flowed"
>>
>> Sry for disturbing again, but does noone have an idea about that?
>>
>> regards,
>> curator
>>
>> Am 26.08.2013 15:04, schrieb curator:
>> > Hi and thanks for your help.
>> >
>> > I read some pages about vtkGlyph3D and came up up with following
>> solution.
>> >
>> > m_vtkCenterPoints = vtkPoints::New();
>> > m_vtkCenterPolyData = vtkPolyData::New();
>> > m_vtkSphereSource = vtkSphereSource::New();
>> > m_vtkGlyph3D = vtkGlyph3D::New();
>> >
>> > m_vtkCenterPolyData->SetPoints(m_vtkCenterPoints);
>> > m_vtkGlyph3D->SetSourceConnection(m_vtkSphereSource->GetOutputPort());
>> > m_vtkGlyph3D->SetInputData(m_vtkCenterPolyData);
>> > m_vtkGlyph3D->GeneratePointIdsOn();
>> >
>> > m_vtkMapper->SetInputConnection(m_vtkGlyph3D->GetOutputPort());
>> >
>> > ....
>> > addData(...)
>> > {
>> >
>> m_vtkCenterPoints->InsertNextPoint(i_Position.x,i_Position.y,i_Position.z);
>> > m_Data.push_back("I am some information");
>> > }
>> > .....
>> > m_vtkGlyph3D->Update();
>> >
>> > So, this works. I have to point out that I have different vtkGlyphs
>> > plotted simultainiously. Nevertheless, I now would like to use a
>> > picker, which means that I would like give some text output of the
>> > current sphere.
>> >
>> > Therefore, during mouseover, I already managed to determine the
>> > current vtkActor and, hence, are already in the "correct" glyph. Now
>> > my idea is, that during the "addData" call, a stl::vector is filled
>> > with information. The number of elements should be identical to the
>> > number of points, as both is extended by one with each call. My aim is
>> > something like
>> >
>> > ...
>> > int ID = i_dont_know() // id of current sphere
>> > printf("Your information is %d\n",m_Data[ID]);
>> > ...
>> > I tried around with vtkCellPicker and vtkPointPicker, which seem to
>> > work in general, but are not very accurate, which means that some
>> > sometimes come up with wrong data as output.
>> > if ( m_PointPicker->Pick( i_X, i_Y, 0, i_Renderer ) )
>> > {
>> > // something is picked
>> > int ID2 =m_PointPicker->GetPointId();
>> >
>> > vtkDataArray *p_Array =
>> > m_vtkGlyph3D->GetOutput()->GetPointData()->GetArray("InputPointIds");
>> > int ID = int(p_Array->GetTuple1(p_ID2 ));
>> > }
>> > or
>> > if ( m_CellPicker->Pick( i_X, i_Y, 0, i_Renderer ) )
>> > {
>> > // something is picked
>> > int ID2 =m_CellPicker->GetCellId();
>> >
>> > vtkDataArray *p_Array =
>> > m_vtkGlyph3D->GetOutput()->GetPointData()->GetArray("InputPointIds");
>> > int ID = int(p_Array->GetTuple1(p_ID2 ));
>> > }
>> >
>> > Is there a more correct approach?
>> >
>> > regards,
>> > curator
>> > Am 22.08.2013 16:55, schrieb David E DeMarle:
>> >> Use a vtkPolyData with points on the locations, and a VTK_VERTEX cell
>> >> refering to each one.
>> >>
>> >> Then send that into vtkGlyph to have the CPU makes the spheres which
>> >> then get send to the card.
>> >>
>> >> Better yet, draw it with vtkGlyph3dMapper to make the spheres via
>> >> vertex programs on the GPU instead of the CPU.
>> >>
>> >> Better still, bring ParaView's point sprite plugin over, which will
>> >> draw the spheres via fragment programs on the GPU.
>> >>
>> >>
>> >> David E DeMarle
>> >> Kitware, Inc.
>> >> R&D Engineer
>> >> 21 Corporate Drive
>> >> Clifton Park, NY 12065-8662
>> >> Phone: 518-881-4909
>> >>
>> >>
>> >> On Thu, Aug 22, 2013 at 10:45 AM, Gib Bogle <g.bogle at auckland.ac.nz
>> >> <mailto:g.bogle at auckland.ac.nz>> wrote:
>> >>
>> >> You need only multiple actors, all using the same mapper.
>> >>
>> >>
>> >> On 23/08/2013 2:39 a.m., curator wrote:
>> >>
>> >> Hi all,
>> >>
>> >> I am able to draw a vtkSphere with its own vtkSphere,
>> >> vtkActor and vtkMapper equipped together. Now if I need
>> >> several spheres, I add multiple instances of this stuff for
>> >> each sphere and add them all up to the same renderer - so
>> >> far, so good.
>> >>
>> >> Now I need to draw a really huge amount of spheres, which are
>> >> all identical except the position. Is there any more
>> >> efficient way to to that than just creating N vtkActors, N
>> >> vtkMappers and N vtkSpheres?
>> >>
>> >> regards,
>> >> curator
>> >> _______________________________________________
>> >> Powered by www.kitware.com <http://www.kitware.com>
>> >>
>> >> Visit other Kitware open-source projects at
>> >> http://www.kitware.com/opensource/opensource.html
>> >>
>> >> Please keep messages on-topic and check the VTK FAQ at:
>> >> http://www.vtk.org/Wiki/VTK_FAQ
>> >>
>> >> Follow this link to subscribe/unsubscribe:
>> >> http://www.vtk.org/mailman/listinfo/vtkusers
>> >>
>> >>
>> >>
>> >> --
>> >> Dr. Gib Bogle
>> >> Senior Research Fellow
>> >> Auckland Bioengineering Institute
>> >> University of Auckland
>> >> New Zealand
>> >>
>> >> http://www.bioeng.auckland.ac.nz
>> >>
>> >> g.bogle at auckland.ac.nz <mailto:g.bogle at auckland.ac.nz>
>> >> (64-9) 373-7599 Ext. 87030
>> >>
>> >>
>> >> _______________________________________________
>> >> Powered by www.kitware.com <http://www.kitware.com>
>> >>
>> >> Visit other Kitware open-source projects at
>> >> http://www.kitware.com/opensource/opensource.html
>> >>
>> >> Please keep messages on-topic and check the VTK FAQ at:
>> >> http://www.vtk.org/Wiki/VTK_FAQ
>> >>
>> >> Follow this link to subscribe/unsubscribe:
>> >> http://www.vtk.org/mailman/listinfo/vtkusers
>> >>
>> >>
>> >>
>> >>
>> >> _______________________________________________
>> >> Powered bywww.kitware.com
>> >>
>> >> Visit other Kitware open-source projects athttp://
>> www.kitware.com/opensource/opensource.html
>> >>
>> >> Please keep messages on-topic and check the VTK FAQ at:
>> http://www.vtk.org/Wiki/VTK_FAQ
>> >>
>> >> Follow this link to subscribe/unsubscribe:
>> >> http://www.vtk.org/mailman/listinfo/vtkusers
>> >
>> >
>> >
>> > _______________________________________________
>> > Powered by www.kitware.com
>> >
>> > Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>> >
>> > Please keep messages on-topic and check the VTK FAQ at:
>> http://www.vtk.org/Wiki/VTK_FAQ
>> >
>> > Follow this link to subscribe/unsubscribe:
>> > http://www.vtk.org/mailman/listinfo/vtkusers
>>
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>> ------------------------------
>>
>> Message: 7
>> Date: Mon, 2 Sep 2013 04:45:27 -0700 (PDT)
>> From: Max <smapersmaper at gmail.com>
>> Subject: Re: [vtkusers] Fwd: Finding Distance
>> To: vtkusers at vtk.org
>> Message-ID: <1378122327911-5723196.post at n5.nabble.com>
>> Content-Type: text/plain; charset=us-ascii
>>
>>
>> http://www.vtk.org/Wiki/VTK/Examples/Cxx/SimpleOperations/DistanceBetweenPoints
>>
>>
>>
>> --
>> View this message in context:
>> http://vtk.1045678.n5.nabble.com/Finding-Distance-tp5723193p5723196.html
>> Sent from the VTK - Users mailing list archive at Nabble.com.
>>
>>
>> ------------------------------
>>
>> Message: 8
>> Date: Mon, 2 Sep 2013 05:04:47 -0700 (PDT)
>> From: Max <smapersmaper at gmail.com>
>> Subject: Re: [vtkusers] VTK 6.0 and .NET Wrapper
>> To: vtkusers at vtk.org
>> Message-ID: <1378123487331-5723197.post at n5.nabble.com>
>> Content-Type: text/plain; charset=us-ascii
>>
>> Hi fasth,
>> I'm using activiz which is a .Net wrapper above vtk.
>> As you said it uses vtk 5.8, and I already asked about it in this forum -
>> no, no planning for developing vtk 6 for activiz in the near future...
>> It is really sad, since many cool features are present in vtk 6 and lack
>> in
>> 5.8 and some people even tried to convince me to develop in c++,
>> it is sad for activiz project, since if the support for it is
>> discontinued,
>> all the huge efford until version 5.8 will be a waste (in a few months no
>> one will want to develop with vtk 5.8)
>> It is also sad for all the .Net developers since it can be a huge factor
>> for
>> them not to use vtk at all.
>> I hope that kitware developers will reconsider their decision, since many
>> developers today are used to develop in .Net.
>>
>> Max
>>
>>
>>
>> --
>> View this message in context:
>> http://vtk.1045678.n5.nabble.com/VTK-6-0-and-NET-Wrapper-tp5723190p5723197.html
>> Sent from the VTK - Users mailing list archive at Nabble.com.
>>
>>
>> ------------------------------
>>
>> Message: 9
>> Date: Mon, 2 Sep 2013 14:09:29 +0200
>> From: david bahn <bahndavid2006 at gmail.com>
>> Subject: Re: [vtkusers] Volume Outline on the surface
>> To: Bill Lorensen <bill.lorensen at gmail.com>, vtkusers at vtk.org
>> Message-ID:
>> <CAD5JttJ9rY5tjrxJ+zW1PhhVXMHz7Dvusu=-=
>> fT9Mgz-67yzmg at mail.gmail.com>
>> Content-Type: text/plain; charset="iso-8859-1"
>>
>> Hi,
>> Here volume outline means, i have to create the volume outline of the
>> data, like it is given in the on right side figure
>>
>> http://www.it.uu.se/edu/course/homepage/vetvis/ht11/ComputerExercises/assignment2.shtml
>> ,
>> can anybody tell how can i do this? note: i cannot use vtkwidget class
>> here.
>>
>>
>> On Fri, Aug 30, 2013 at 2:28 PM, Bill Lorensen <bill.lorensen at gmail.com
>> >wrote:
>>
>> > What is the volume outline?
>> >
>> >
>> >
>> > On Fri, Aug 30, 2013 at 8:24 AM, david bahn <bahndavid2006 at gmail.com
>> >wrote:
>> >
>> >> Hi All,
>> >> Anybody can tell me, how can we show the volume outline on the
>> >> surface(or polydata).
>> >>
>> >>
>> >> david
>> >>
>> >> _______________________________________________
>> >> Powered by www.kitware.com
>> >>
>> >> Visit other Kitware open-source projects at
>> >> http://www.kitware.com/opensource/opensource.html
>> >>
>> >> Please keep messages on-topic and check the VTK FAQ at:
>> >> http://www.vtk.org/Wiki/VTK_FAQ
>> >>
>> >> Follow this link to subscribe/unsubscribe:
>> >> http://www.vtk.org/mailman/listinfo/vtkusers
>> >>
>> >>
>> >
>> >
>> > --
>> > Unpaid intern in BillsBasement at noware dot com
>> >
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>> ------------------------------
>>
>> Message: 10
>> Date: Mon, 2 Sep 2013 08:12:19 -0400
>> From: Bill Lorensen <bill.lorensen at gmail.com>
>> Subject: Re: [vtkusers] Volume Outline on the surface
>> To: david bahn <bahndavid2006 at gmail.com>
>> Cc: VTK Users <vtkusers at vtk.org>
>> Message-ID:
>> <
>> CADZJ4hM5ougKzcp+n5oNkAKX_6D7C0_6A8nkyY+YKXudagf2YQ at mail.gmail.com>
>> Content-Type: text/plain; charset=ISO-8859-1
>>
>> http://vtk.org/Wiki/VTK/Examples/Cxx/PolyData/Outline
>>
>>
>> On Mon, Sep 2, 2013 at 8:09 AM, david bahn <bahndavid2006 at gmail.com>
>> wrote:
>> > Hi,
>> > Here volume outline means, i have to create the volume outline of the
>> > data, like it is given in the on right side figure
>> >
>> http://www.it.uu.se/edu/course/homepage/vetvis/ht11/ComputerExercises/assignment2.shtml
>> > , can anybody tell how can i do this? note: i cannot use vtkwidget class
>> > here.
>> >
>> >
>> > On Fri, Aug 30, 2013 at 2:28 PM, Bill Lorensen <bill.lorensen at gmail.com
>> >
>> > wrote:
>> >>
>> >> What is the volume outline?
>> >>
>> >>
>> >>
>> >> On Fri, Aug 30, 2013 at 8:24 AM, david bahn <bahndavid2006 at gmail.com>
>> >> wrote:
>> >>>
>> >>> Hi All,
>> >>> Anybody can tell me, how can we show the volume outline on the
>> >>> surface(or polydata).
>> >>>
>> >>>
>> >>> david
>> >>>
>> >>> _______________________________________________
>> >>> Powered by www.kitware.com
>> >>>
>> >>> Visit other Kitware open-source projects at
>> >>> http://www.kitware.com/opensource/opensource.html
>> >>>
>> >>> Please keep messages on-topic and check the VTK FAQ at:
>> >>> http://www.vtk.org/Wiki/VTK_FAQ
>> >>>
>> >>> Follow this link to subscribe/unsubscribe:
>> >>> http://www.vtk.org/mailman/listinfo/vtkusers
>> >>>
>> >>
>> >>
>> >>
>> >> --
>> >> Unpaid intern in BillsBasement at noware dot com
>> >
>> >
>>
>>
>>
>> --
>> Unpaid intern in BillsBasement at noware dot com
>>
>>
>> ------------------------------
>>
>> Message: 11
>> Date: Mon, 2 Sep 2013 17:52:43 +0530
>> From: safna <safna.royal10 at gmail.com>
>> Subject: Re: [vtkusers] Fwd: Finding Distance
>> To: Max <smapersmaper at gmail.com>, vtkusers at vtk.org
>> Message-ID:
>> <CAC0f8ZQY=RLdAy=
>> fndKoQFzRNOs1GiN1B14nvuhNL8qa708KFg at mail.gmail.com>
>> Content-Type: text/plain; charset="iso-8859-1"
>>
>> Dear Max
>>
>>
>> I want to get the closest distance between two object like a line source
>> and sphere source not the distance between two points
>>
>>
>>
>>
>> Thank You,
>>
>> safna
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>> ------------------------------
>>
>> Message: 12
>> Date: Mon, 2 Sep 2013 08:23:50 -0400
>> From: Bill Lorensen <bill.lorensen at gmail.com>
>> Subject: Re: [vtkusers] Fwd: Finding Distance
>> To: Max <smapersmaper at gmail.com>
>> Cc: VTK Users <vtkusers at vtk.org>
>> Message-ID:
>> <CADZJ4hNWyfH3M_dyuphoads2j0Whq4qg=
>> 9ZrS1UVLtbFz3uuZA at mail.gmail.com>
>> Content-Type: text/plain; charset=ISO-8859-1
>>
>> http://vtk.org/Wiki/VTK/Examples/Cxx/PolyData/DistancePolyDataFilter
>>
>>
>> On Mon, Sep 2, 2013 at 7:45 AM, Max <smapersmaper at gmail.com> wrote:
>> >
>> http://www.vtk.org/Wiki/VTK/Examples/Cxx/SimpleOperations/DistanceBetweenPoints
>> >
>> >
>> >
>> > --
>> > View this message in context:
>> http://vtk.1045678.n5.nabble.com/Finding-Distance-tp5723193p5723196.html
>> > Sent from the VTK - Users mailing list archive at Nabble.com.
>> > _______________________________________________
>> > Powered by www.kitware.com
>> >
>> > Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>> >
>> > Please keep messages on-topic and check the VTK FAQ at:
>> http://www.vtk.org/Wiki/VTK_FAQ
>> >
>> > Follow this link to subscribe/unsubscribe:
>> > http://www.vtk.org/mailman/listinfo/vtkusers
>>
>>
>>
>> --
>> Unpaid intern in BillsBasement at noware dot com
>>
>>
>> ------------------------------
>>
>> Message: 13
>> Date: Mon, 2 Sep 2013 20:58:08 +0500
>> From: Altamash Abbasi <altamashabbasi at gmail.com>
>> Subject: [vtkusers] Libraries
>> To: "vtkusers at vtk.org" <vtkusers at vtk.org>
>> Message-ID:
>> <CACmdbMPVvtDERV+XUSAYZkJy1=
>> pu3yBKuFGKOJqWFzxLx9KQDA at mail.gmail.com>
>> Content-Type: text/plain; charset="iso-8859-1"
>>
>> I want to learn all the libraries of VTK and their functions . . . which
>> tutorial/web address/books will help me . . .
>>
>> Thanxalot
>> Altamash Abbasi
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