[vtkusers] Compile error with vtk 6.0.0 rc2

Fri May 31 13:29:31 EDT 2013

Thanks Orion. Looking into it...

David E DeMarle
Kitware, Inc.
R&D Engineer
21 Corporate Drive
Clifton Park, NY 12065-8662
Phone: 518-881-4909

On Fri, May 31, 2013 at 9:38 AM, Orion Poplawski <orion at cora.nwra.com>wrote:

> I'm trying to compile vtk 6.0.0 on Fedora (in preparation for updating the
> Fedora package) and getting the following:
>
> Linking CXX executable ../../../../bin/**vtkIOGeometryCxxTests
> cd /export/home/orion/fedora/vtk/**VTK6.0.0.rc2/build/IO/**Geometry/Testing/Cxx
> && /usr/bin/cmake -E cmake_link_script CMakeFiles/**
> vtkIOGeometryCxxTests.dir/**link.txt --verbose=1
> /usr/lib64/ccache/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
> -fexceptions -fstack-protector --param=ssp-buffer-size=4  -m64
> -mtune=generic -D_UNICODE   -Wno-deprecated -g  -Wl,--fatal-warnings
> -Wl,--no-undefined -lc -Wl,--fatal-warnings -Wl,--no-undefined -lc
> -Wl,-z,relro CMakeFiles/**vtkIOGeometryCxxTests.dir/**vtkIOGeometryCxxTests.cxx.o
> CMakeFiles/**vtkIOGeometryCxxTests.dir/**TestSimplePointsReaderWriter.**cxx.o
> CMakeFiles/**vtkIOGeometryCxxTests.dir/**TestWindBladeReader.cxx.o  -o
> ../../../../bin/**vtkIOGeometryCxxTests -L/usr/lib/jvm/java/jre/lib/**amd64/xawt
> -L/usr/lib/jvm/java/jre/lib/**amd64/client -L/usr/lib/jvm/java/jre/lib/**amd64/server
> -rdynamic ../../../../lib/**libvtkFiltersGeometry-6.0.so.1
> ../../../../lib/**libvtkFiltersCore-6.0.so.1 ../../../../lib/**
> libvtkCommonExecutionModel-6.**0.so.1 ../../../../lib/**libvtkCommonDataModel-6.0.so.1
> ../../../../lib/**libvtkCommonMath-6.0.so.1 ../../../../lib/**libvtkCommonCore-6.0.so.1
> ../../../../lib/libvtksys-6.0.**so.1 ../../../../lib/**libvtkCommonMisc-6.0.so.1
> ../../../../lib/**libvtkCommonSystem-6.0.so.1 ../../../../lib/**
> libvtkCommonTransforms-6.0.so.**1 ../../../../lib/libvtkIOAMR-6.**0.so.1
> ../../../../lib/**libvtkFiltersAMR-6.0.so.1 ../../../../lib/**libvtkFiltersGeneral-6.0.so.1
> ../../../../lib/**libvtkCommonComputationalGeome**try-6.0.so.1
> ../../../../lib/**libvtkParallelCore-6.0.so.1 ../../../../lib/**libvtkIOLegacy-6.0.so.1
> ../../../../lib/libvtkIOCore-**6.0.so.1 -lz -lrt -lm -lhdf5_hl -lhdf5
> ../../../../lib/libvtkjsoncpp-**6.0.so.1 ../../../../lib/**
> libvtkInteractionStyle-6.0.so.**1 ../../../../lib/**libvtkRenderingCore-6.0.so.1
> ../../../../lib/**libvtkFiltersExtraction-6.0.**so.1 ../../../../lib/**
> libvtkFiltersStatistics-6.0.**so.1 ../../../../lib/**libvtkImagingFourier-6.0.so.1
> ../../../../lib/**libvtkImagingCore-6.0.so.1 ../../../../lib/libvtkalglib-
> **6.0.so.1 ../../../../lib/**libvtkFiltersSources-6.0.so.1
> ../../../../lib/libvtkIOImage-**6.0.so.1 ../../../../lib/**libvtkDICOMParser-6.0.so.1
> ../../../../lib/libvtkmetaio-**6.0.so.1 -ljpeg -lpng -ltiff
> ../../../../lib/**libvtkIOXMLParser-6.0.so.1 -lexpat ../../../../lib/**libvtkRenderingOpenGL-6.0.so.1
> ../../../../lib/**libvtkImagingHybrid-6.0.so.1 ../../../../lib/**
> libvtkTestingRendering-6.0.so.**1 -lGLU -lGL -lSM -lICE -lX11 -lXext -lSM
> -lICE -lX11 -lXext -lXt ../../../../lib/**libvtkRenderingCore-6.0.so.1
> ../../../../lib/**libvtkFiltersGeometry-6.0.so.1 ../../../../lib/**
> libvtkFiltersExtraction-6.0.**so.1 ../../../../lib/**
> libvtkFiltersStatistics-6.0.**so.1 ../../../../lib/**libvtkImagingFourier-6.0.so.1
> ../../../../lib/libvtkalglib-**6.0.so.1 ../../../../lib/**libvtkFiltersSources-6.0.so.1
> ../../../../lib/**libvtkFiltersGeneral-6.0.so.1 ../../../../lib/**libvtkFiltersCore-6.0.so.1
> ../../../../lib/**libvtkCommonComputationalGeome**try-6.0.so.1
> ../../../../lib/libvtkIOImage-**6.0.so.1 ../../../../lib/**libvtkDICOMParser-6.0.so.1
> ../../../../lib/libvtkmetaio-**6.0.so.1 -ljpeg -lpng -ltiff
> ../../../../lib/**libvtkIOXMLParser-6.0.so.1 ../../../../lib/libvtkIOCore-
> **6.0.so.1 -lz -lexpat ../../../../lib/**libvtkImagingCore-6.0.so.1
> ../../../../lib/**libvtkCommonExecutionModel-6.**0.so.1 ../../../../lib/**libvtkCommonDataModel-6.0.so.1
> ../../../../lib/**libvtkCommonMisc-6.0.so.1 ../../../../lib/**libvtkCommonSystem-6.0.so.1
> ../../../../lib/**libvtkCommonTransforms-6.0.so.**1 ../../../../lib/**libvtkCommonMath-6.0.so.1
> ../../../../lib/**libvtkCommonCore-6.0.so.1 ../../../../lib/libvtksys-6.0.
> **so.1 -ldl -Wl,-rpath,/usr/lib/jvm/java/**jre/lib/amd64/xawt:/usr/lib/**
> jvm/java/jre/lib/amd64/client:**/usr/lib/jvm/java/jre/lib/**
> amd64/server:/export/home/**orion/fedora/vtk/VTK6.0.0.rc2/**build/lib
> CMakeFiles/**vtkIOGeometryCxxTests.dir/**TestWindBladeReader.cxx.o: In
> function `vtkSmartPointer<**vtkWindBladeReader>::New()':
> /export/home/orion/fedora/vtk/**VTK6.0.0.rc2/Common/Core/**vtkSmartPointer.h:113:
> undefined reference to `vtkWindBladeReader::New()'
> CMakeFiles/**vtkIOGeometryCxxTests.dir/**TestWindBladeReader.cxx.o: In
> function `TestWindBladeReader(int, char**)':
> /export/home/orion/fedora/vtk/**VTK6.0.0.rc2/IO/Geometry/**Testing/Cxx/**TestWindBladeReader.cxx:132:
> undefined reference to `vtkWindBladeReader::**GetFieldOutput()'
> collect2: error: ld returned 1 exit status
> make[2]: *** [bin/vtkIOGeometryCxxTests] Error 1
>
> It looks like it is not getting linked to libvtkIOGeometry but should. Not
> sure how to fix this.
>
> Configuration:
>
> + CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
> -fstack-protector --param=ssp-buffer-size=4  -m64 -mtune=ge
> neric -D_UNICODE'
> + export CFLAGS
> + CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
> -fstack-protector --param=ssp-buffer-size=4  -m64 -mtune=
> generic -D_UNICODE'
> + export CXXFLAGS
> + FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
> -fstack-protector --param=ssp-buffer-size=4  -m64 -mtune=ge
> neric -I/usr/lib64/gfortran/modules'
> + export FFLAGS
> + FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
> -fstack-protector --param=ssp-buffer-size=4  -m64 -mtune=g
> eneric -I/usr/lib64/gfortran/modules'
> + export FCFLAGS
> + LDFLAGS='-Wl,-z,relro '
> + export LDFLAGS
> + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:**STRING=-DNDEBUG
> -DCMAKE_CXX_FLAGS_RELEASE:**STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELE
> ASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=**ON
> -DCMAKE_INSTALL_PREFIX:PATH=/**usr -DINCLUDE_INSTALL_DIR:PATH=/**
> usr/include
>  -DLIB_INSTALL_DIR:PATH=/usr/**lib64 -DSYSCONF_INSTALL_DIR:PATH=/**etc
> -DSHARE_INSTALL_PREFIX:PATH=/**usr/share -DLIB_SUFFIX=64 -DB
> UILD_SHARED_LIBS:BOOL=ON .. -DBUILD_DOCUMENTATION:BOOL=ON
> -DBUILD_EXAMPLES:BOOL=ON -DBUILD_TESTING:BOOL=ON -DVTK_INSTALL_INCL
> UDE_DIR:PATH=/include/vtk -DVTK_INSTALL_LIB_DIR:PATH=/**lib64/vtk
> -DTK_INTERNAL_PATH:PATH=/usr/**include/tk-private/generic '-DVT
> K_PYTHON_SETUP_ARGS=--prefix=/**usr --root=/export/home/orion/**
> redhat/BUILDROOT/vtk-6.0.0-0.**1.rc2.fc18.x86_64' -DVTK_WRAP_PYTHON
> :BOOL=ON -DVTK_WRAP_JAVA:BOOL=ON -DJAVA_INCLUDE_PATH:PATH=/usr/**lib/jvm/java/include
> -DJAVA_INCLUDE_PATH2:PATH=/**usr/lib/jvm/ja
> va/include/linux -DJAVA_AWT_INCLUDE_PATH:PATH=/**usr/lib/jvm/java/include
> -DVTK_WRAP_TCL:BOOL=ON -DVTK_Group_Imaging:BOOL=ON -D
> VTK_Group_Qt:BOOL=ON -DVTK_Group_Rendering:BOOL=ON
> -DVTK_Group_StandAlone:BOOL=ON -DVTK_Group_Tk:BOOL=ON -DVTK_Group_Views:BO
> OL=ON -DVTK_USE_OGGTHEORA_ENCODER=ON -DVTK_USE_SYSTEM_LIBRARIES=ON
> -DVTK_USE_SYSTEM_LIBPROJ4=OFF
>
> --
> Orion Poplawski
> Technical Manager                     303-415-9701 x222
> NWRA/CoRA Division                    FAX: 303-415-9702
> 3380 Mitchell Lane                  orion at cora.nwra.com
> Boulder, CO 80301              http://www.cora.nwra.com
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