[vtkusers] import vtk,segmentation fault, python

petr zlamal p.zlamal.vtk at gmail.com
Mon Oct 29 10:44:40 EDT 2012


Hi all,
I have problem with python and vtk. I compiled vtk (5.10.1) with my home 
directory (on the server a have not root privileges) using:

cmakes (note: cmake opition: BUILD_SHARED_LIBS=ON, VTK_WRAP_PYTHON=ON, 
VTK_USE_64BIT_IDS=ON).
make -j 8
make install

Compilation was without problems. After this I set:

export 
PYTHONPATH=~/usr/local/lib/python2.7/site-packages:/usr/local/lib/vtk-5.10:$PYTHONPATH
export LD_LIBRARY_PATH=~/usr/local/lib/vtk-5.10:$LD_LIBRARY_PATH

run python and try import vtk, but the import was failed (see below). 
Any idea how to solve my problem?

Thanks
Vepro

 >>> import vtk
import vtk # directory /home/vepro/usr/local/lib/python2.7/site-packages/vtk
# /home/vepro/usr/local/lib/python2.7/site-packages/vtk/__init__.pyc 
matches /home/vepro/usr/local/lib/python2.7/site-packages/vtk/__init__.py
import vtk # precompiled from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/__init__.pyc
# /usr/lib64/python2.7/plat-linux2/DLFCN.pyc matches 
/usr/lib64/python2.7/plat-linux2/DLFCN.py
import DLFCN # precompiled from /usr/lib64/python2.7/plat-linux2/DLFCN.pyc
# /home/vepro/usr/local/lib/python2.7/site-packages/vtk/__helper.pyc 
matches /home/vepro/usr/local/lib/python2.7/site-packages/vtk/__helper.py
import vtk.__helper # precompiled from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/__helper.pyc
# /usr/lib64/python2.7/string.pyc matches /usr/lib64/python2.7/string.py
import string # precompiled from /usr/lib64/python2.7/string.pyc
dlopen("/usr/lib64/python2.7/lib-dynload/strop.so", 2);
import strop # dynamically loaded from 
/usr/lib64/python2.7/lib-dynload/strop.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkCommonPython.so", 
102);
import vtk.vtkCommonPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkCommonPython.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkFilteringPython.so", 
102);
import vtk.vtkFilteringPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkFilteringPython.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkIOPython.so", 
102);
import vtk.vtkIOPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkIOPython.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkImagingPython.so", 
102);
import vtk.vtkImagingPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkImagingPython.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkGraphicsPython.so", 
102);
import vtk.vtkGraphicsPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkGraphicsPython.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkGenericFilteringPython.so", 
102);
import vtk.vtkGenericFilteringPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkGenericFilteringPython.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkRenderingPython.so", 
102);
import vtk.vtkRenderingPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkRenderingPython.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkVolumeRenderingPython.so", 
102);
import vtk.vtkVolumeRenderingPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkVolumeRenderingPython.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkHybridPython.so", 
102);
import vtk.vtkHybridPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkHybridPython.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkWidgetsPython.so", 
102);
import vtk.vtkWidgetsPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkWidgetsPython.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkChartsPython.so", 
102);
import vtk.vtkChartsPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkChartsPython.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkGeovisPython.so", 
102);
import vtk.vtkGeovisPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkGeovisPython.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkInfovisPython.so", 
102);
import vtk.vtkInfovisPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkInfovisPython.so
dlopen("/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkViewsPython.so", 
102);
import vtk.vtkViewsPython # dynamically loaded from 
/home/vepro/usr/local/lib/python2.7/site-packages/vtk/vtkViewsPython.so
dlopen("/usr/lib64/paraview/vtkParallelPython.so", 102);
Segmentation fault








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