[vtkusers] Closed vtkPolyLine to binary image
Dirk Boye
body at nabla.org
Mon Jul 12 11:38:35 EDT 2010
I found the problem!
Remove extruder->SetExtrusionTypeToNormalExtrusion();
If extruder->SetVector(0, 0, _somevalue_) then
origin[3] of the whiteimage has to be set to something between 0.01 and
_somevalue_ and it works immediately.
I viewed the extruder output in paraview.. it's something like an "surface"
and i think the imageplane z-centre has to be inside the z-bounds of this
"surface"
Thanks for your help,
Cheers
Dirk
> If you'd like to, you can send me the poly data file and your piece of
> code - maybe can I help you ... but maybe not ;)
> lars
>
> -------- Original-Nachricht --------
>> Datum: Mon, 12 Jul 2010 16:51:30 +0200
>> Von: "Dirk Boye" <body at nabla.org>
>> An: "Lars Friedrich Lars" <lars-friedrich at gmx.net>
>> CC: "Dirk Boye" <body at nabla.org>, vtkusers at vtk.org
>> Betreff: Re: [vtkusers] Closed vtkPolyLine to binary image
>
>> Yes it does!
>>
>> > Strange.
>> > Does the circle-polydata define a continuous closed line after
>> stripper?
>> >
>> > -------- Original-Nachricht --------
>> >> Datum: Mon, 12 Jul 2010 16:34:59 +0200
>> >> Von: "Dirk Boye" <body at nabla.org>
>> >> An: "Lars Friedrich Lars" <lars-friedrich at gmx.net>
>> >> CC: "Dirk Boye" <body at nabla.org>, vtkusers at vtk.org
>> >> Betreff: Re: [vtkusers] Closed vtkPolyLine to binary image
>> >
>> >> Hey Lars,
>> >>
>> >> Nope it didn't. I can't find the error ^^
>> >>
>> >> dirk
>> >>
>> >> > Dirk,
>> >> >
>> >> > try to place the stripper between polyreader->GetOutput() and
>> circle,
>> >> i.e.
>> >> > vtkSmartPointer<vtkPolyData> circle = stripper->GetOutput();
>> >> > Let me know whether it helped.
>> >> >
>> >> > lars
>> >> >
>> >> >
>> >> > -------- Original-Nachricht --------
>> >> >> Datum: Mon, 12 Jul 2010 16:16:49 +0200
>> >> >> Von: "Dirk Boye" <body at nabla.org>
>> >> >> An: "Lars Friedrich Lars" <lars-friedrich at gmx.net>
>> >> >> CC: "Dirk Boye" <body at nabla.org>, vtkusers at vtk.org
>> >> >> Betreff: Re: [vtkusers] Closed vtkPolyLine to binary image
>> >> >
>> >> >> I ran your example and the only difference between
>> >> stripper->GetOutput()
>> >> >> and my outline were the normals.
>> >> >>
>> >> >> My code is as follows: (your code but with a readin of my circle
>> >> >> and given image dimensions etc.)
>> >> >>
>> >> >> The vtk File can be found here:
>> >> >> http://www.nabla.org/circle.vtk
>> >> >>
>> >> >> The resulting image is black only.
>> >> >>
>> >> >>
>> >> >> #include <vtkSmartPointer.h>
>> >> >> #include <vtkPolyData.h>
>> >> >> #include <vtkImageData.h>
>> >> >> #include <vtkSphereSource.h>
>> >> >> #include <vtkMetaImageWriter.h>
>> >> >> #include <vtkPolyDataToImageStencil.h>
>> >> >> #include <vtkImageStencil.h>
>> >> >> #include <vtkPointData.h>
>> >> >> #include <vtkCutter.h>
>> >> >> #include <vtkPlane.h>
>> >> >> #include <vtkStripper.h>
>> >> >> #include <vtkLinearExtrusionFilter.h>
>> >> >> #include <vtkXMLPolyDataWriter.h>
>> >> >> #include <vtkPolyDataReader.h>
>> >> >>
>> >> >> int main(int argc, char **argv)
>> >> >> {
>> >> >> vtkSmartPointer< vtkPolyDataReader > polyreader=vtkSmartPointer<
>> >> >> vtkPolyDataReader >::New();
>> >> >> polyreader->SetFileName("circle.vtk");
>> >> >> polyreader->Update();
>> >> >>
>> >> >> vtkSmartPointer<vtkPolyData> circle = polyreader->GetOutput();
>> >> >>
>> >> >> // prepare the binary image's voxel grid
>> >> >> vtkSmartPointer<vtkImageData> whiteImage =
>> >> >> vtkSmartPointer<vtkImageData>::New();
>> >> >> double spacing[3]; // desired volume spacing
>> >> >> spacing[0] = 2.0;
>> >> >> spacing[1] = 2.0;
>> >> >> spacing[2] = 2.0;
>> >> >> whiteImage->SetSpacing(spacing);
>> >> >>
>> >> >> // compute dimensions
>> >> >> int dim[3]={256,256,1};
>> >> >> whiteImage->SetDimensions(dim);
>> >> >> whiteImage->SetExtent(0, dim[0] - 1, 0, dim[1] - 1, 0, dim[2] -
>> 1);
>> >> >> double origin[3]={0,0,0};
>> >> >> whiteImage->SetOrigin(origin);
>> >> >> whiteImage->SetScalarTypeToUnsignedChar();
>> >> >> whiteImage->AllocateScalars();
>> >> >> // fill the image with foreground voxels:
>> >> >> unsigned char inval = 255;
>> >> >> unsigned char outval = 0;
>> >> >> vtkIdType count = whiteImage->GetNumberOfPoints();
>> >> >> for (vtkIdType i = 0; i < count; ++i)
>> >> >> {
>> >> >> whiteImage->GetPointData()->GetScalars()->SetTuple1(i, inval);
>> >> >> }
>> >> >>
>> >> >> // sweep polygonal data (this is the important thing with
>> contours!)
>> >> >> vtkSmartPointer<vtkLinearExtrusionFilter> extruder =
>> >> >> vtkSmartPointer<vtkLinearExtrusionFilter>::New();
>> >> >> extruder->SetInput(circle);
>> >> >> extruder->SetScaleFactor(1.);
>> >> >> extruder->SetExtrusionTypeToNormalExtrusion();
>> >> >> extruder->SetVector(0, 0, 1);
>> >> >> extruder->Update();
>> >> >>
>> >> >> // polygonal data --> image stencil:
>> >> >> vtkSmartPointer<vtkPolyDataToImageStencil> pol2stenc =
>> >> >> vtkSmartPointer<vtkPolyDataToImageStencil>::New();
>> >> >> pol2stenc->SetTolerance(0); // important if
>> extruder->SetVector(0,
>> >> 0,
>> >> >> 1)
>> >> >> !!!
>> >> >> pol2stenc->SetInputConnection(extruder->GetOutputPort());
>> >> >> pol2stenc->SetOutputOrigin(origin);
>> >> >> pol2stenc->SetOutputSpacing(spacing);
>> >> >> pol2stenc->SetOutputWholeExtent(whiteImage->GetExtent());
>> >> >> pol2stenc->Update();
>> >> >>
>> >> >> // cut the corresponding white image and set the background:
>> >> >> vtkSmartPointer<vtkImageStencil> imgstenc =
>> >> >> vtkSmartPointer<vtkImageStencil>::New();
>> >> >> imgstenc->SetInput(whiteImage);
>> >> >> imgstenc->SetStencil(pol2stenc->GetOutput());
>> >> >> imgstenc->ReverseStencilOff();
>> >> >> imgstenc->SetBackgroundValue(outval);
>> >> >> imgstenc->Update();
>> >> >>
>> >> >> vtkSmartPointer<vtkMetaImageWriter> imageWriter =
>> >> >> vtkSmartPointer<vtkMetaImageWriter>::New();
>> >> >> imageWriter->SetFileName("labelImage.mhd");
>> >> >> imageWriter->SetInput(imgstenc->GetOutput());
>> >> >> imageWriter->Write();
>> >> >>
>> >> >> return 0;
>> >> >> };
>> >> >>
>> >> >>
>> >> >> >
>> >> >> > vtkPolyDataNormals
>> >> >> >
>> >> >> > just to satisfy my curiosity:
>> >> >> > why are you of the opinion that missing normals are a problem
>> for
>> >> that
>> >> >> > approach? I copied the piece of example code more or less from
>> an
>> >> old
>> >> >> > application I programmed some months ago; as far as I can
>> remember,
>> >> my
>> >> >> > input polygons did not have any normals defined, and it worked
>> >> though
>> >> >> ...
>> >> >> >
>> >> >> > regards,
>> >> >> > lars
>> >> >> >
>> >> >> > -------- Original-Nachricht --------
>> >> >> >> Datum: Mon, 12 Jul 2010 15:30:01 +0200
>> >> >> >> Von: "Dirk Boye" <body at nabla.org>
>> >> >> >> An: "Lars Friedrich Lars" <lars-friedrich at gmx.net>
>> >> >> >> CC: "Dirk Boye" <body at nabla.org>, vtkusers at vtk.org
>> >> >> >> Betreff: Re: [vtkusers] Closed vtkPolyLine to binary image
>> >> >> >
>> >> >> >> Hi Lars,
>> >> >> >>
>> >> >> >> Thank you for your help. My problem now seems to be, that my
>> >> contour
>> >> >> >> lines
>> >> >> >> don't have any normals.
>> >> >> >>
>> >> >> >> Do you know if there's some function to generate the normals?
>> >> >> >>
>> >> >> >> Cheers,
>> >> >> >> Dirk
>> >> >> >>
>> >> >> >> > Hi,
>> >> >> >> >
>> >> >> >> > I added a small example:
>> >> >> >> >
>> >> >> >> >
>> >> >> >>
>> >> >>
>> >>
>> http://www.cmake.org/Wiki/VTK/Examples/PolyData/PolyDataContourToImageData
>> >> >> >> >
>> >> >> >> > Hope that helps you.
>> >> >> >> >
>> >> >> >> > However, please read the NOTE in the description. Maybe you
>> >> could
>> >> >> fix
>> >> >> >> /
>> >> >> >> > verify the image origin problem.
>> >> >> >> >
>> >> >> >> > regards,
>> >> >> >> > lars
>> >> >> >> >
>> >> >> >> > -------- Original-Nachricht --------
>> >> >> >> >> Datum: Mon, 12 Jul 2010 08:36:32 +0200
>> >> >> >> >> Von: "Dirk Boye" <body at nabla.org>
>> >> >> >> >> An: vtkusers at vtk.org
>> >> >> >> >> Betreff: [vtkusers] Closed vtkPolyLine to binary image
>> >> >> >> >
>> >> >> >> >> Dear list,
>> >> >> >> >>
>> >> >> >> >> let's say I have a closed vtkPolyLine in 2D and points are
>> >> >> >> >> ordered clockwise and last point=first point.
>> >> >> >> >> The resulting Polygon is non-convex.
>> >> >> >> >>
>> >> >> >> >> I'd like to create a binary image
>> >> >> >> >> from that. Ones inside the line, zeros outside. See picture:
>> >> >> >> >> http://www.nabla.org/circlecontour.png
>> >> >> >> >>
>> >> >> >> >> Is there an filter to do that? Or do I have to check all
>> >> pixels,
>> >> >> >> >> if they are inside?
>> >> >> >> >>
>> >> >> >> >>
>> >> >> >> >> Cheers,
>> >> >> >> >> Dirk
>> >> >> >> >>
>> >> >> >> >>
>> >> >> >> >>
>> >> >> >> >> _______________________________________________
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>> >> >> >> >>
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>> >> >> >> >
>> >> >> >> > --
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>> >> >> >> >
>> >> >> >> >
>> >> >> >
>> >> >> > --
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>> >> >> >
>> >> >> >
>> >> >
>> >> > --
>> >> > GMX DSL: Internet-, Telefon- und Handy-Flat ab 19,99 EUR/mtl.
>> >> > Bis zu 150 EUR Startguthaben inklusive!
>> >> http://portal.gmx.net/de/go/dsl
>> >> >
>> >> >
>> >
>> > --
>> > GRATIS für alle GMX-Mitglieder: Die maxdome Movie-FLAT!
>> > Jetzt freischalten unter http://portal.gmx.net/de/go/maxdome01
>> >
>> >
>
> --
> GRATIS für alle GMX-Mitglieder: Die maxdome Movie-FLAT!
> Jetzt freischalten unter http://portal.gmx.net/de/go/maxdome01
>
>
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