[vtkusers] how many DICOM files can i read with VTK on 32 bit machine
Orlinn
MeinDatenLaufwerk at googlemail.com
Thu Oct 22 06:07:48 EDT 2009
hello everybody,
i thought that my problem was hat a process in win 32 bit maschine can oly
have 2 GB. But my JAVA Process takes only 950 MB RAM (1188 dicom files).
When i add one more file than i get a crash.
All my DICOM files are from the same sequence.
I get a file with with error message
---------------BEGIN---------------------------------------
#
# A fatal error has been detected by the Java Runtime Environment:
#
# Internal Error (0xe06d7363), pid=2780, tid=3108
#
# JRE version: 6.0_15-b03
# Java VM: Java HotSpot(TM) Client VM (14.1-b02 mixed mode, sharing
windows-x86 )
# Problematic frame:
# C [kernel32.dll+0x12afb]
#
# If you would like to submit a bug report, please visit:
# http://java.sun.com/webapps/bugreport/crash.jsp
# The crash happened outside the Java Virtual Machine in native code.
# See problematic frame for where to report the bug.
#
--------------- T H R E A D ---------------
Current thread (0x003a6800): JavaThread "main" [_thread_in_native, id=3108,
stack(0x008c0000,0x00910000)]
siginfo: ExceptionCode=0xe06d7363, ExceptionInformation=0x19930520
0x0090f9e0 0x030ece84
Registers:
EAX=0x0090f938, EBX=0x00000000, ECX=0x00000000, EDX=0x000e0000
ESP=0x0090f934, EBP=0x0090f988, ESI=0x0090f9c0, EDI=0x12940000
EIP=0x7c812afb, EFLAGS=0x00000206
Top of Stack: (sp=0x0090f934)
0x0090f934: 042e2228 e06d7363 00000001 00000000
0x0090f944: 7c812afb 00000003 19930520 0090f9e0
0x0090f954: 030ece84 03220000 00000000 785838da
0x0090f964: dd14a16f 12940000 042e2288 00000000
0x0090f974: 785838da 7848beba 0430d110 042e22d4
0x0090f984: 0090f964 0090f9c0 7857dbf9 e06d7363
0x0090f994: 00000001 00000003 0090f9b4 e06d7363
0x0090f9a4: 00000001 00000000 00000000 00000003
Instructions: (pc=0x7c812afb)
0x7c812aeb: 8d 7d c4 f3 a5 5f 8d 45 b0 50 ff 15 10 15 80 7c
0x7c812afb: 5e c9 c2 10 00 85 ff 0f 8e 36 93 ff ff 8b 55 fc
Stack: [0x008c0000,0x00910000], sp=0x0090f934, free space=318k
Native frames: (J=compiled Java code, j=interpreted, Vv=VM code, C=native
code)
C [kernel32.dll+0x12afb]
C [MSVCR90.dll+0x5dbf9]
Java frames: (J=compiled Java code, j=interpreted, Vv=VM code)
j vtk.vtkAlgorithm.Update_51()V+0
j vtk.vtkAlgorithm.Update()V+1
j vtkMiptempo.main([Ljava/lang/String;)V+285
v ~StubRoutines::call_stub
--------------- P R O C E S S ---------------
Java Threads: ( => current thread )
0x02aa5c00 JavaThread "Low Memory Detector" daemon [_thread_blocked,
id=1684, stack(0x02d20000,0x02d70000)]
0x02aa2c00 JavaThread "CompilerThread0" daemon [_thread_blocked, id=3388,
stack(0x02cd0000,0x02d20000)]
0x02aa1400 JavaThread "Attach Listener" daemon [_thread_blocked, id=3964,
stack(0x02c80000,0x02cd0000)]
0x02aa0000 JavaThread "Signal Dispatcher" daemon [_thread_blocked,
id=3536, stack(0x02c30000,0x02c80000)]
0x02a5e000 JavaThread "Finalizer" daemon [_thread_blocked, id=2268,
stack(0x02be0000,0x02c30000)]
0x02a5c800 JavaThread "Reference Handler" daemon [_thread_blocked, id=372,
stack(0x02b90000,0x02be0000)]
=>0x003a6800 JavaThread "main" [_thread_in_native, id=3108,
stack(0x008c0000,0x00910000)]
Other Threads:
0x02a5b000 VMThread [stack: 0x02b40000,0x02b90000] [id=2136]
0x02aa7400 WatcherThread [stack: 0x02d70000,0x02dc0000] [id=3344]
VM state:not at safepoint (normal execution)
VM Mutex/Monitor currently owned by a thread: None
Heap
def new generation total 960K, used 169K [0x22990000, 0x22a90000,
0x22e70000)
eden space 896K, 11% used [0x22990000, 0x229aa6b0, 0x22a70000)
from space 64K, 99% used [0x22a80000, 0x22a8fff8, 0x22a90000)
to space 64K, 0% used [0x22a70000, 0x22a70000, 0x22a80000)
tenured generation total 4096K, used 65K [0x22e70000, 0x23270000,
0x26990000)
the space 4096K, 1% used [0x22e70000, 0x22e805a8, 0x22e80600,
0x23270000)
compacting perm gen total 12288K, used 406K [0x26990000, 0x27590000,
0x2a990000)
the space 12288K, 3% used [0x26990000, 0x269f5b28, 0x269f5c00,
0x27590000)
ro space 8192K, 63% used [0x2a990000, 0x2aea9920, 0x2aea9a00,
0x2b190000)
rw space 12288K, 53% used [0x2b190000, 0x2b804dd0, 0x2b804e00,
0x2bd90000)
Dynamic libraries:
0x00400000 - 0x00424000 C:\Programme\Java\jre6\bin\javaw.exe
0x7c910000 - 0x7c9c9000 C:\WINDOWS\system32\ntdll.dll
0x7c800000 - 0x7c908000 C:\WINDOWS\system32\kernel32.dll
0x77da0000 - 0x77e4a000 C:\WINDOWS\system32\ADVAPI32.dll
0x77e50000 - 0x77ee2000 C:\WINDOWS\system32\RPCRT4.dll
0x77fc0000 - 0x77fd1000 C:\WINDOWS\system32\Secur32.dll
0x7e360000 - 0x7e3f1000 C:\WINDOWS\system32\USER32.dll
0x77ef0000 - 0x77f39000 C:\WINDOWS\system32\GDI32.dll
0x7c340000 - 0x7c396000 C:\Programme\Java\jre6\bin\msvcr71.dll
0x6d800000 - 0x6da8b000 C:\Programme\Java\jre6\bin\client\jvm.dll
0x76af0000 - 0x76b1e000 C:\WINDOWS\system32\WINMM.dll
0x6d7b0000 - 0x6d7bc000 C:\Programme\Java\jre6\bin\verify.dll
0x6d330000 - 0x6d34f000 C:\Programme\Java\jre6\bin\java.dll
0x6d290000 - 0x6d298000 C:\Programme\Java\jre6\bin\hpi.dll
0x76bb0000 - 0x76bbb000 C:\WINDOWS\system32\PSAPI.DLL
0x6d7f0000 - 0x6d7ff000 C:\Programme\Java\jre6\bin\zip.dll
0x10000000 - 0x1004e000
C:\Programme\VTK\VTKBin\bin\Release\vtkCommonJava.dll
0x02fd0000 - 0x0316c000 C:\Programme\VTK\VTKBin\bin\Release\vtkCommon.dll
0x03180000 - 0x031b5000 C:\Programme\VTK\VTKBin\bin\Release\vtksys.dll
0x71a10000 - 0x71a27000 C:\WINDOWS\system32\WS2_32.dll
0x77be0000 - 0x77c38000 C:\WINDOWS\system32\msvcrt.dll
0x71a00000 - 0x71a08000 C:\WINDOWS\system32\WS2HELP.dll
0x78520000 - 0x785c3000
C:\WINDOWS\WinSxS\x86_Microsoft.VC90.CRT_1fc8b3b9a1e18e3b_9.0.30729.1_x-ww_6f74963e\MSVCR90.dll
0x78480000 - 0x7850e000
C:\WINDOWS\WinSxS\x86_Microsoft.VC90.CRT_1fc8b3b9a1e18e3b_9.0.30729.1_x-ww_6f74963e\MSVCP90.dll
0x71a30000 - 0x71a3a000 C:\WINDOWS\system32\WSOCK32.dll
0x03230000 - 0x032a9000
C:\Programme\VTK\VTKBin\bin\Release\vtkFilteringJava.dll
0x032c0000 - 0x034c4000
C:\Programme\VTK\VTKBin\bin\Release\vtkFiltering.dll
0x034e0000 - 0x0351f000 C:\Programme\VTK\VTKBin\bin\Release\vtkIOJava.dll
0x03530000 - 0x0383a000 C:\Programme\VTK\VTKBin\bin\Release\vtkIO.dll
0x03850000 - 0x0386b000
C:\Programme\VTK\VTKBin\bin\Release\vtkDICOMParser.dll
0x03880000 - 0x038a1000 C:\Programme\VTK\VTKBin\bin\Release\vtkNetCDF.dll
0x038c0000 - 0x0392f000 C:\Programme\VTK\VTKBin\bin\Release\vtkmetaio.dll
0x03940000 - 0x03952000 C:\Programme\VTK\VTKBin\bin\Release\vtkzlib.dll
0x03970000 - 0x0398c000 C:\Programme\VTK\VTKBin\bin\Release\vtkpng.dll
0x039a0000 - 0x039be000 C:\Programme\VTK\VTKBin\bin\Release\vtkjpeg.dll
0x039d0000 - 0x03a17000 C:\Programme\VTK\VTKBin\bin\Release\vtktiff.dll
0x03a30000 - 0x03a4c000 C:\Programme\VTK\VTKBin\bin\Release\vtkexpat.dll
0x73ac0000 - 0x73ad7000 C:\WINDOWS\system32\AVIFIL32.dll
0x774b0000 - 0x775ed000 C:\WINDOWS\system32\ole32.dll
0x77bb0000 - 0x77bc5000 C:\WINDOWS\system32\MSACM32.dll
0x75ec0000 - 0x75ee1000 C:\WINDOWS\system32\MSVFW32.dll
0x7e670000 - 0x7ee91000 C:\WINDOWS\system32\SHELL32.dll
0x77f40000 - 0x77fb6000 C:\WINDOWS\system32\SHLWAPI.dll
0x773a0000 - 0x774a3000
C:\WINDOWS\WinSxS\x86_Microsoft.Windows.Common-Controls_6595b64144ccf1df_6.0.2600.5512_x-ww_35d4ce83\COMCTL32.dll
0x03a80000 - 0x03ab1000
C:\Programme\VTK\VTKBin\bin\Release\vtkImagingJava.dll
0x03ac0000 - 0x03cef000 C:\Programme\VTK\VTKBin\bin\Release\vtkImaging.dll
0x03d00000 - 0x03d7f000
C:\Programme\VTK\VTKBin\bin\Release\vtkGraphicsJava.dll
0x03d90000 - 0x041ac000 C:\Programme\VTK\VTKBin\bin\Release\vtkGraphics.dll
0x041c0000 - 0x041e7000 C:\Programme\VTK\VTKBin\bin\Release\vtkverdict.dll
0x04200000 - 0x04260000
C:\Programme\VTK\VTKBin\bin\Release\vtkRenderingJava.dll
0x04390000 - 0x04694000
C:\Programme\VTK\VTKBin\bin\Release\vtkRendering.dll
0x046a0000 - 0x046ad000 C:\Programme\VTK\VTKBin\bin\Release\vtkftgl.dll
0x5f0d0000 - 0x5f19c000 C:\WINDOWS\system32\OPENGL32.dll
0x68fc0000 - 0x68fe0000 C:\WINDOWS\system32\GLU32.dll
0x736d0000 - 0x7371b000 C:\WINDOWS\system32\DDRAW.dll
0x73b30000 - 0x73b36000 C:\WINDOWS\system32\DCIMAN32.dll
0x046c0000 - 0x04718000 C:\Programme\VTK\VTKBin\bin\Release\vtkfreetype.dll
0x6d360000 - 0x6d366000 C:\Programme\Java\jre6\bin\jawt.dll
0x6d000000 - 0x6d14a000 C:\Programme\Java\jre6\bin\awt.dll
0x72f70000 - 0x72f96000 C:\WINDOWS\system32\WINSPOOL.DRV
0x76330000 - 0x7634d000 C:\WINDOWS\system32\IMM32.dll
0x04c40000 - 0x04c5b000
C:\Programme\VTK\VTKBin\bin\Release\vtkVolumeRenderingJava.dll
0x04c70000 - 0x05041000
C:\Programme\VTK\VTKBin\bin\Release\vtkVolumeRendering.dll
0x5b0f0000 - 0x5b128000 C:\WINDOWS\system32\uxtheme.dll
0x746a0000 - 0x746ec000 C:\WINDOWS\system32\MSCTF.dll
VM Arguments:
jvm_args: -Dfile.encoding=Cp1252
java_command: vtkMiptempo
Launcher Type: SUN_STANDARD
-----------END---------------------------------------------
Has anybody an another idea????
thank you
Orlinn wrote:
>
> Hello vtk friends,
>
> i use vtk in combination with java on an 32 bit machine(win xp, 3 GB RAM).
> To read the DICOM files i use the class vtkDICOMImageReader.
> i have about 3000 DICOM but i can only read about 1100 files.
> Has anybody experience how many files or what can be the maximum size of
> afile(for example a raw file) that vtk can read??
>
> thank you
>
--
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