[vtkusers] MRI Tiff stacks

[Maneesh Yadav]

On Thu, 2 Aug 2001, Julian Humphries wrote:

>
>
> Maneesh Yadav wrote:
> >
> > Hi Lisa,
> > I'm not sure if you can be of much help, but the 'tiff stack' is
> > a single file (?).  The data is from mouseatlas.caltech.edu, (you can
> > click an embryo and get the tiff stack from the bottom of the page, here
> > is an example:
> >
> > http://mouseatlas.caltech.edu/Stacks_and_movies/13.5dpc-Stacks_and_movies/13.5dpc_NIH_stacks/Stack,Cor1750_50,256*256_NoZF
> >
> > I've never heard of these stacks before, but apparently NIH Image can view
> > them...if anyone can suggest as to how to get this data into VTK that'd be
> > great...(it don't think it is quite as simple as a concatenated set of
> > TIFF's but it shouldn't be much more complicated than that)...
> >
>
> Go to http://rsb.info.nih.gov/ij/ and download or run imagej.  You can
> open the stack and export it out as separate tiff files.  (Convert stack to
> images).  You can also do any image processing you might need to do ahead of
> time before vtk.

Apparently ImageJ cannot handle compressed TIFF files...:(...

>
> Julian Humphries
>