[Tubetk-developers] the Healthy MR Database in TuBeTK

[Stephen Aylward]

Hi,  Thanks for posting your question.

ITK's SpatialObject reader can read the .tre format (See ITK Software
Guide, page 143: https://itk.org/ItkSoftwareGuide.pdf)

There are also two examples of reading .tre files in Python Jupyter
Notebooks that are distributed with ITKTubeTK:
1)
https://github.com/KitwareMedical/ITKTubeTK/blob/master/docs/examples/ConvertTubesToImage.ipynb
and
2)
https://github.com/KitwareMedical/ITKTubeTK/blob/master/docs/examples/TubeNumPyArrayAndPropertyHistograms.ipynb

Hope these help.

On Tue, Dec 17, 2019 at 8:44 PM 吴松雄 via Tubetk-developers <
tubetk-developers at public.kitware.com> wrote:

> Dear sir，
>
> I’m very thanksful about you about the Healthy MR Database in TuBeTK. But I don’t know how to use the file “VascularNetwork.tre” which is the label vascular centerlines. Could you help or tell me how can I process this condition? I want to use the information in the .tre file to generate the gold standard and I had tried to convert the world coordinates of the centerline into image coordinates, but I failed.I'm grateful if I could hear from you in your spare time.
>
>
> _______________________________________________
> Tubetk-developers mailing list
> Tubetk-developers at public.kitware.com
> https://public.kitware.com/mailman/listinfo/tubetk-developers
>


-- 
Stephen R. Aylward, Ph.D.
Senior Director of Strategic Initiatives
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <https://public.kitware.com/pipermail/tubetk-developers/attachments/20200106/3bde643a/attachment.html>