From fanghuihuibit at 163.com  Mon Jun  6 11:20:48 2016
From: fanghuihuibit at 163.com (=?GBK?B?t72727vc?=)
Date: Mon, 6 Jun 2016 23:20:48 +0800 (CST)
Subject: [Tubetk-developers] Question about making the application
 :ComputeTubeGraphSimilarityKernelMatrix
Message-ID: <6cf9022.e206.155264d4e14.Coremail.fanghuihuibit@163.com>

Hi
    I have encountered a problem during making the application:ComputeTubeGraphSimilarityKernelMatrix.
    These are the errors:

/usr/bin/ld: /usr/lib/x86_64-linux-gnu/libboost_system.a(error_code.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC
/usr/lib/x86_64-linux-gnu/libboost_system.a: error adding symbols: Bad value
collect2: error: ld returned 1 exit status
make[2]: *** [lib/libComputeTubeGraphSimilarityKernelMatrixLib.so] Error 1
make[1]: *** [CMakeFiles/ComputeTubeGraphSimilarityKernelMatrixLib.dir/all] Error 2
make: *** [all] Error 2

    I don`t know how to solve it. Could someone help me ?
    Thank you very much.


Channel_F
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From fanghuihuibit at 163.com  Mon Jun  6 11:24:35 2016
From: fanghuihuibit at 163.com (=?GBK?B?t72727vc?=)
Date: Mon, 6 Jun 2016 23:24:35 +0800 (CST)
Subject: [Tubetk-developers] Question about making the application
 :ComputeTubeGraphSimilarityKernelMatrix
Message-ID: <5fcc6b9d.e247.1552650c5ec.Coremail.fanghuihuibit@163.com>

Hi
    I have encountered a problem during making the application:ComputeTubeGraphSimilarityKernelMatrix.
    These are the errors:

/usr/bin/ld: /usr/lib/x86_64-linux-gnu/libboost_system.a(error_code.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC
/usr/lib/x86_64-linux-gnu/libboost_system.a: error adding symbols: Bad value
collect2: error: ld returned 1 exit status
make[2]: *** [lib/libComputeTubeGraphSimilarityKernelMatrixLib.so] Error 1
make[1]: *** [CMakeFiles/ComputeTubeGraphSimilarityKernelMatrixLib.dir/all] Error 2
make: *** [all] Error 2

    I don`t know how to solve it. Could someone help me ?
    Thank you very much.


Channel_F
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From stephen.aylward at kitware.com  Wed Jun  8 11:51:08 2016
From: stephen.aylward at kitware.com (Stephen Aylward)
Date: Wed, 8 Jun 2016 11:51:08 -0400
Subject: [Tubetk-developers] Question about making the application
	:ComputeTubeGraphSimilarityKernelMatrix
In-Reply-To: <6cf9022.e206.155264d4e14.Coremail.fanghuihuibit@163.com>
References: <6cf9022.e206.155264d4e14.Coremail.fanghuihuibit@163.com>
Message-ID: <CALcsBJKkso-sCA5x-80gYgfvOwsszYy1HHvEDZK-tAExBSCaTg@mail.gmail.com>

Hi,

This suggests that boost was not compiled with the -fPIC option, and it is
needed to build the 64bit interface.

If you don't need that specific application, you can turn off
"TubeTK_USE_BOOST" when configuring TubeTK using CMake.

s

On Mon, Jun 6, 2016 at 11:20 AM, ??? <fanghuihuibit at 163.com> wrote:

> Hi
>     I have encountered a problem during making the
> application:ComputeTubeGraphSimilarityKernelMatrix.
>     These are the errors:
>
> /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libboost_system.a(error_code.o):
> relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making
> a shared object; recompile with -fPIC
> /usr/lib/x86_64-linux-gnu/libboost_system.a: error adding symbols: Bad
> value
> collect2: error: ld returned 1 exit status
> make[2]: *** [lib/libComputeTubeGraphSimilarityKernelMatrixLib.so] Error 1
> make[1]: ***
> [CMakeFiles/ComputeTubeGraphSimilarityKernelMatrixLib.dir/all] Error 2
> make: *** [all] Error 2
>
>     I don`t know how to solve it. Could someone help me ?
>     Thank you very much.
>
>
> Channel_F
>
>
>
>
> _______________________________________________
> Tubetk-developers mailing list
> Tubetk-developers at public.kitware.com
> http://public.kitware.com/mailman/listinfo/tubetk-developers
>
>


-- 
====================================================
Stephen R. Aylward, Ph.D.
Senior Director of Operations, North Carolina, Kitware, Inc.
http://www.kitware.com and http://www.aylward.org
(919) 969-6990 x300
====================================================
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From fanghuihuibit at 163.com  Tue Jun 21 10:12:01 2016
From: fanghuihuibit at 163.com (=?GBK?B?t72727vc?=)
Date: Tue, 21 Jun 2016 22:12:01 +0800 (CST)
Subject: [Tubetk-developers] Question about
	EnhanceTubesUsingDiscriminantAnalysis Application
Message-ID: <7d0046b4.191f3.155734dbaf9.Coremail.fanghuihuibit@163.com>

Hello everybody,
     I have encountered a problem during testing the Enhance Tube Using Discriminant Analysis Application.
    When I used the command '--loadDiscriminantInfo ~//VesselExtraction/SegmentTubesParameters/A33/vess.mrs',
the program would make error:


    MetaForm: Read: MET_Read Failed

    MetaLDA: M_Read: Error parsing file.

    MetaRidgeSeed: M_Read: Error parsing file

    MetaRidgeSeed: Read: Cannot parse file

    Dose it mean my parameter'.mrs' was wrong?

    How could I use the command '--loadDiscriminantInfo'?

    Could somebody help me ? Thank you very very much!



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From stephen.aylward at kitware.com  Tue Jun 21 13:09:29 2016
From: stephen.aylward at kitware.com (Stephen Aylward)
Date: Tue, 21 Jun 2016 13:09:29 -0400
Subject: [Tubetk-developers] Question about
 EnhanceTubesUsingDiscriminantAnalysis Application
In-Reply-To: <7d0046b4.191f3.155734dbaf9.Coremail.fanghuihuibit@163.com>
References: <7d0046b4.191f3.155734dbaf9.Coremail.fanghuihuibit@163.com>
Message-ID: <CALcsBJL0E61dr5wgXzit2u2MhrK=W3J_0e7T-P8zPp-LTRoNUw@mail.gmail.com>

There is a double-/ in the path name, right after the ~.   I recommend
using the full path instead (e.g., /home/you/VesselExtraction/...).

s

On Tue, Jun 21, 2016 at 10:12 AM, ??? <fanghuihuibit at 163.com> wrote:

> Hello everybody,
>      I have encountered a problem during testing the Enhance Tube Using
> Discriminant Analysis Application.
>     When I used the command '--loadDiscriminantInfo
> ~//VesselExtraction/SegmentTubesParameters/A33/vess.mrs',
> the program would make error:
>
>     MetaForm: Read: MET_Read Failed
>
>     MetaLDA: M_Read: Error parsing file.
>
>     MetaRidgeSeed: M_Read: Error parsing file
>
>     MetaRidgeSeed: Read: Cannot parse file
>
>     Dose it mean my parameter'.mrs' was wrong?
>
>     How could I use the command '--loadDiscriminantInfo'?
>
>     Could somebody help me ? Thank you very very much!
>
>
>
>
>
> _______________________________________________
> Tubetk-developers mailing list
> Tubetk-developers at public.kitware.com
> http://public.kitware.com/mailman/listinfo/tubetk-developers
>
>


-- 
====================================================
Stephen R. Aylward, Ph.D.
Senior Director of Operations, North Carolina, Kitware, Inc.
http://www.kitware.com and http://www.aylward.org
(919) 969-6990 x300
====================================================
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From fanghuihuibit at 163.com  Wed Jun 22 01:27:11 2016
From: fanghuihuibit at 163.com (=?UTF-8?B?5pa55oWn5Y2J?=)
Date: Wed, 22 Jun 2016 13:27:11 +0800 (CST)
Subject: [Tubetk-developers] Question about
 EnhanceTubesUsingDiscriminantAnalysis Application
In-Reply-To: <CALcsBJL0E61dr5wgXzit2u2MhrK=W3J_0e7T-P8zPp-LTRoNUw@mail.gmail.com>
References: <7d0046b4.191f3.155734dbaf9.Coremail.fanghuihuibit@163.com>
 <CALcsBJL0E61dr5wgXzit2u2MhrK=W3J_0e7T-P8zPp-LTRoNUw@mail.gmail.com>
Message-ID: <73adcc9a.86ab.1557693941f.Coremail.fanghuihuibit@163.com>

Sorry,I had a mistake in last mail.
My input is "--loadDiscriminantInfo /home/myname/Project/TubeTK/EnhanceTubeUsingDiscriminantAnalysis/bin/A33/vess.mrs".
But the program made error:
MetaForm: Read: MET_Read Failed
MetaLDA: M_Read: Error parsing file.
MetaRidgeSeed: M_Read: Error parsing file
MetaRidgeSeed: Read: Cannot parse file
NPCABasis required and not defined.
I don`t know why.
Could you tell me how to solve it?
Thank you !

At 2016-06-22 01:09:29, "Stephen Aylward" <stephen.aylward at kitware.com> wrote:

There is a double-/ in the path name, right after the ~.   I recommend using the full path instead (e.g., /home/you/VesselExtraction/...).


s


On Tue, Jun 21, 2016 at 10:12 AM, ??? <fanghuihuibit at 163.com> wrote:

Hello everybody,
     I have encountered a problem during testing the Enhance Tube Using Discriminant Analysis Application.
    When I used the command '--loadDiscriminantInfo ~//VesselExtraction/SegmentTubesParameters/A33/vess.mrs',
the program would make error:


    MetaForm: Read: MET_Read Failed

    MetaLDA: M_Read: Error parsing file.

    MetaRidgeSeed: M_Read: Error parsing file

    MetaRidgeSeed: Read: Cannot parse file

    Dose it mean my parameter'.mrs' was wrong?

    How could I use the command '--loadDiscriminantInfo'?

    Could somebody help me ? Thank you very very much!








 


_______________________________________________
Tubetk-developers mailing list
Tubetk-developers at public.kitware.com
http://public.kitware.com/mailman/listinfo/tubetk-developers







--

====================================================
Stephen R. Aylward, Ph.D.
Senior Director of Operations, North Carolina, Kitware, Inc.
http://www.kitware.com and http://www.aylward.org
(919) 969-6990 x300
====================================================
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