<div dir="ltr"><div>Yes, sorry, we need to release binaries compatible with the latest ITK. Alternatively, you can downgrade the ITK packages to the v5.1.0 (maybe) or v5.0.1 (for sure) versions. Sorry for the trouble...</div><div>Simon<br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, Nov 24, 2020 at 4:22 PM Bleeker, M. (Margot) <<a href="mailto:m.bleeker@amsterdamumc.nl">m.bleeker@amsterdamumc.nl</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">





<div lang="EN-US">
<div class="gmail-m_7744112298958623901WordSection1">
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif;color:rgb(31,73,125)" lang="NL">Thanks! Your suggestion worked!<u></u><u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif;color:rgb(31,73,125)" lang="NL"><u></u> <u></u></span></p>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif;color:rgb(31,73,125)" lang="NL">Margot<u></u><u></u></span></p>
<p class="MsoNormal"><span lang="NL"><u></u> <u></u></span></p>
<p class="MsoNormal"><b><span style="font-size:11pt;font-family:"Calibri",sans-serif">From:</span></b><span style="font-size:11pt;font-family:"Calibri",sans-serif"> Nils Krah <<a href="mailto:nils.krah@creatis.insa-lyon.fr" target="_blank">nils.krah@creatis.insa-lyon.fr</a>>
<br>
<b>Sent:</b> dinsdag 24 november 2020 15:51<br>
<b>To:</b> Bleeker, M. (Margot) <<a href="mailto:m.bleeker@amsterdamumc.nl" target="_blank">m.bleeker@amsterdamumc.nl</a>><br>
<b>Cc:</b> <a href="mailto:rtk-users@public.kitware.com" target="_blank">rtk-users@public.kitware.com</a><br>
<b>Subject:</b> Re: [Rtk-users] ITK-RTK python install issues<u></u><u></u></span></p>
<p class="MsoNormal"><u></u> <u></u></p>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">I had a similar issue some days ago and Simon suggested to download a recently built wheel from github:
<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​<a href="https://eur04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FSimonRit%2FRTK%2Factions%2Fruns%2F341384403&data=04%7C01%7Cm.bleeker%40amsterdamumc.nl%7C2f84671ee1b94590ddb408d8908863ff%7C68dfab1a11bb4cc6beb528d756984fb6%7C0%7C0%7C637418262748788557%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=%2Bxn3aVBWVSJWK0unA5DEejKJ8vY%2F8RGQmj%2BWleIJ6hs%3D&reserved=0" title="https://github.com/SimonRit/RTK/actions/runs/341384403" target="_blank">https://github.com/SimonRit/RTK/actions/runs/341384403</a><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​(you need to be logged in to github)<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">download the appropriate file and run<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​pip install <FILENAME>​<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​locally.
<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​Or
<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​python -m pip install <FILENAME><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​Solved the issue for me on MacOS.
<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​Simon might correct me if I am writing bogus here.
<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">Cheers<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​Nils<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">​<u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif">On Nov 24 2020, at 3:33 pm, Bleeker, M. (Margot) <<a href="mailto:m.bleeker@amsterdamumc.nl" target="_blank">m.bleeker@amsterdamumc.nl</a>> wrote:<u></u><u></u></span></p>
</div>
<blockquote style="margin-top:5pt;margin-bottom:5pt">
<div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">Hello,</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u> <u></u></span></p>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">I am new to ITK and RTK and I’m trying to use the itk-rtk python package. I set up a new environment with python 3.7 (with Conda) on Windows 10 and ran:</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">Pip install itk-rtk</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">I could import both packages, but I got the following error when I ran the example FirstReconstruction.py:</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">‘’</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">Traceback (most recent call last):</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">  File "D:\Program files\RTK-master\examples\FirstReconstruction\FirstReconstruction.py", line 14, in <module></span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">    geometry = rtk.ThreeDCircularProjectionGeometry.New()</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">  File "D:\Python\envs\CBreconstruct\lib\site-packages\itkLazy.py", line 52, in __getattribute__</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">    itkBase.LoadModule(module, namespace)</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">  File "D:\Python\envs\CBreconstruct\lib\site-packages\itkBase.py", line 99, in LoadModule</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">    module = loader.load(swig_module_name)</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">  File "D:\Python\envs\CBreconstruct\lib\site-packages\itkBase.py", line 220, in load</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">    module.__loader__.exec_module(module)</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">  File "<frozen importlib._bootstrap_external>", line 728, in exec_module</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">  File "D:\Python\envs\CBreconstruct\lib\site-packages\itk\RTKPython.py", line 119, in <module></span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">    from itkFixedArrayRTKPython import *</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">  File "D:\Python\envs\CBreconstruct\lib\site-packages\itk\Configuration\..\itkFixedArrayRTKPython.py", line 106, in <module></span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">    import pyBasePython</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">  File "D:\Python\envs\CBreconstruct\lib\site-packages\itk\Configuration\..\pyBasePython.py", line 8, in <module></span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">    from . import _ITKPyBasePython</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">ImportError: attempted relative import with no known parent package</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">‘’</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">Does anyone know how to solve this issue?</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u> <u></u></span></p>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">Thanks</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u> <u></u></span></p>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">Sincerely,</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif">Margot Bleeker</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><img style="width: 2.7604in; height: 0.4687in;" id="gmail-m_7744112298958623901_x0000_i1025" src="cid:175fae9ca664cff311" height="45" border="0" width="265"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u> <u></u></span></p>
<div>
<p class="MsoNormal"><strong><span style="font-size:8pt;font-family:"Trebuchet MS",sans-serif;color:rgb(0,55,65)">Margot Bleeker, MSc.|</span></strong><span style="font-size:8pt;font-family:"Trebuchet MS",sans-serif;color:rgb(0,55,65)">  PhD student (OiO)</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:8pt;font-family:"Trebuchet MS",sans-serif">Afdeling Radiotherapie</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:8pt;font-family:"Trebuchet MS",sans-serif">Locatie AMC | Z1-217 | Meibergdreef 9, 1105 AZ Amsterdam</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:8pt;font-family:"Trebuchet MS",sans-serif">T: +31 20 566 7974|  E:
<a href="mailto:m.bleeker@amsterdamumc.nl" target="_blank">m.bleeker@amsterdamumc.nl</a></span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:8pt;font-family:"Trebuchet MS",sans-serif"><a href="http://www.amsterdamumc.nl/" title="http://www.amsterdamumc.nl/" target="_blank"><span style="font-family:"Times New Roman",serif;color:windowtext">www.amsterdamumc.nl</span></a>
  |  <u><a href="http://www.vumc.nl/" title="http://www.vumc.nl/" target="_blank"><span style="font-family:"Times New Roman",serif;color:windowtext">www.vumc.nl</span></a></u> /
<a href="http://www.amc.nl/" title="http://www.amc.nl/" target="_blank"><span style="font-family:"Times New Roman",serif;color:windowtext">www.amc.nl</span></a></span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
</div>
<div>
<p class="MsoNormal"><span style="font-size:11pt;font-family:"Calibri",sans-serif"> </span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:7pt;font-family:"Trebuchet MS",sans-serif">______________________________________________________</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:7pt;font-family:"Trebuchet MS",sans-serif">VUmc disclaimer :
<a href="http://www.vumc.nl/disclaimer" target="_blank">www.vumc.nl/disclaimer</a></span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:7pt;font-family:"Trebuchet MS",sans-serif">AMC disclaimer :
<a href="http://www.amc.nl/disclaimer" target="_blank">www.amc.nl/disclaimer</a></span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
</div>
<div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Courier New"">_______________________________________________</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Courier New"">Rtk-users mailing list</span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Courier New""><a href="mailto:Rtk-users@public.kitware.com" target="_blank">Rtk-users@public.kitware.com</a></span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:10.5pt;font-family:"Courier New""><a href="https://public.kitware.com/mailman/listinfo/rtk-users" target="_blank">https://public.kitware.com/mailman/listinfo/rtk-users</a></span><span style="font-size:10.5pt;font-family:"Arial",sans-serif"><u></u><u></u></span></p>
</div>
</div>
</blockquote>
</div>
</div>

_______________________________________________<br>
Rtk-users mailing list<br>
<a href="mailto:Rtk-users@public.kitware.com" target="_blank">Rtk-users@public.kitware.com</a><br>
<a href="https://public.kitware.com/mailman/listinfo/rtk-users" rel="noreferrer" target="_blank">https://public.kitware.com/mailman/listinfo/rtk-users</a><br>
</blockquote></div>