[Rtk-users] error in ThreeDCircularProjectionGeometry GeometryType

[Howard]

Hi Simon,

Here is the CMakeLists.txt I used for compiling and linking. Thanks
for looking into the issue.

Howard

===============================================

cmake_minimum_required(VERSION 3.12)

PROJECT(Test1)

# Find the RTK libraries and includes
FIND_PACKAGE(RTK REQUIRED)
INCLUDE(${RTK_USE_FILE})

# Find ITK with RTK
find_package(ITK REQUIRED)
include(${ITK_USE_FILE})

# Executable
ADD_EXECUTABLE(Test1 Test1.cxx )
TARGET_LINK_LIBRARIES(Test1 ${RTK_LIBRARIES})
TARGET_LINK_LIBRARIES(Test1 ${ITK_LIBRARIES})


On 6/25/19, Simon Rit <simon.rit at creatis.insa-lyon.fr> wrote:
> Hi Howard,
> Since it's a linking problem, maybe you should check that you have linked
> the RTK_libraries, see e.g.,
> https://github.com/SimonRit/RTK/blob/master/examples/FirstReconstruction/CMakeLists.txt#L12
> I can try to fix the problem if you provide a full example.
> Simon
>
> On Mon, Jun 24, 2019 at 9:45 PM Howard <lomahu at gmail.com> wrote:
>
>> Hi,
>>
>> I was trying to play with the simple example to reconstruct a sphere
>> from the RTK wiki page. The sample code:
>>
>>  // Projection matrices
>>   unsigned int numberOfProjections = 360;
>>   unsigned int firstAngle = 0;
>>   unsigned int angularArc = 360;
>>   unsigned int sid =  80; // source to isocenter distance in mm
>>   unsigned int sdd = 160; // source to detector distance in mm
>>   int isox = 0; // X coordinate on the projection image of isocenter
>>   int isoy = 0; // Y coordinate on the projection image of isocenter
>>
>>
>>   for(unsigned int noProj=0; noProj<numberOfProjections; noProj++) {
>>       double angle = (float)firstAngle + (float)noProj * angularArc /
>> (float)numberOfProjections;
>>       geometry->AddProjection(sid, sdd, angle, isox, isoy);
>>   }
>>
>>
>> When I compiled the code, I got an error from the line in the projection
>> loop:
>>
>> geometry->AddProjection(sid, sdd, angle, isox, isoy);
>>
>> I am using an old version of RTK 1.1 but it should not matter. Can
>> anyone help me out? Thanks!
>>
>> [chaom02 at minerva2 recon]$ make
>> Scanning dependencies of target Test1
>> [ 50%] Building CXX object CMakeFiles/Test1.dir/Test1.cxx.o
>> [100%] Linking CXX executable Test1
>>
>> /sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
>> In function `itk::MatrixOffsetTransformBase<double, 3u,
>> 3u>::GetFixedParameters() const':
>>
>> rtkThreeDCircularProjectionGeometry.cxx:(.text._ZNK3itk25MatrixOffsetTransformBaseIdLj3ELj3EE18GetFixedParametersEv[_ZNK3itk25MatrixOffsetTransformBaseIdLj3ELj3EE18GetFixedParametersEv]+0x23):
>> undefined reference to `vnl_vector<double>::set_size(unsigned int)'
>>
>> /sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
>> In function `itk::MatrixOffsetTransformBase<double, 3u,
>> 3u>::SetFixedParameters(itk::OptimizerParameters<double> const&)':
>>
>> rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk25MatrixOffsetTransformBaseIdLj3ELj3EE18SetFixedParametersERKNS_19OptimizerParametersIdEE[_ZN3itk25MatrixOffsetTransformBaseIdLj3ELj3EE18SetFixedParametersERKNS_19OptimizerParametersIdEE]+0x4f):
>> undefined reference to `vnl_vector<double>::set_size(unsigned int)'
>>
>> /sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
>> In function
>> `itk::CenteredEuler3DTransform<double>::SetParameters(itk::OptimizerParameters<double>
>> const&)':
>>
>> rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk24CenteredEuler3DTransformIdE13SetParametersERKNS_19OptimizerParametersIdEE[_ZN3itk24CenteredEuler3DTransformIdE13SetParametersERKNS_19OptimizerParametersIdEE]+0x31):
>> undefined reference to `vnl_vector<double>::set_size(unsigned int)'
>>
>> /sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
>> In function
>> `itk::Euler3DTransform<double>::SetParameters(itk::OptimizerParameters<double>
>> const&)':
>>
>> rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk16Euler3DTransformIdE13SetParametersERKNS_19OptimizerParametersIdEE[_ZN3itk16Euler3DTransformIdE13SetParametersERKNS_19OptimizerParametersIdEE]+0x40):
>> undefined reference to `vnl_vector<double>::set_size(unsigned int)'
>>
>> /sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
>> In function `itk::Transform<double, 3u, 3u>::Transform(unsigned
>> long)':
>>
>> rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk9TransformIdLj3ELj3EEC2Em[_ZN3itk9TransformIdLj3ELj3EEC5Em]+0x49):
>> undefined reference to `vnl_vector<double>::vnl_vector(unsigned int)'
>>
>> rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk9TransformIdLj3ELj3EEC2Em[_ZN3itk9TransformIdLj3ELj3EEC5Em]+0xa3):
>> undefined reference to `vnl_vector<double>::vnl_vector(unsigned int)'
>>
>> /sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
>> In function `itk::MatrixOffsetTransformBase<double, 3u,
>> 3u>::MatrixOffsetTransformBase()':
>>
>> rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk25MatrixOffsetTransformBaseIdLj3ELj3EEC2Ev[_ZN3itk25MatrixOffsetTransformBaseIdLj3ELj3EEC5Ev]+0x21b):
>> undefined reference to `vnl_vector<double>::set_size(unsigned int)'
>>
>> /sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
>> In function
>> `itk::Rigid3DTransform<double>::SetParameters(itk::OptimizerParameters<double>
>> const&)':
>>
>> rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk16Rigid3DTransformIdE13SetParametersERKNS_19OptimizerParametersIdEE[_ZN3itk16Rigid3DTransformIdE13SetParametersERKNS_19OptimizerParametersIdEE]+0x3e):
>> undefined reference to `vnl_vector<double>::set_size(unsigned int)'
>>
>> /sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
>> In function `itk::MatrixOffsetTransformBase<double, 3u,
>> 3u>::SetParameters(itk::OptimizerParameters<double> const&)':
>>
>> rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk25MatrixOffsetTransformBaseIdLj3ELj3EE13SetParametersERKNS_19OptimizerParametersIdEE[_ZN3itk25MatrixOffsetTransformBaseIdLj3ELj3EE13SetParametersERKNS_19OptimizerParametersIdEE]+0x43):
>> undefined reference to `vnl_vector<double>::set_size(unsigned int)'
>>
>> /sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
>> In function `itk::MatrixOffsetTransformBase<double, 3u,
>> 3u>::TransformVector(itk::VariableLengthVector<double> const&) const':
>>
>> rtkThreeDCircularProjectionGeometry.cxx:(.text._ZNK3itk25MatrixOffsetTransformBaseIdLj3ELj3EE15TransformVectorERKNS_20VariableLengthVectorIdEE[_ZNK3itk25MatrixOffsetTransformBaseIdLj3ELj3EE15TransformVectorERKNS_20VariableLengthVectorIdEE]+0x2f):
>> undefined reference to `vnl_vector<double>::vnl_vector(unsigned int)'
>>
>> /sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
>> In function `itk::MatrixOffsetTransformBase<double, 3u,
>> 3u>::TransformCovariantVector(itk::VariableLengthVector<double>
>> const&) const':
>>
>> rtkThreeDCircularProjectionGeometry.cxx:(.text._ZNK3itk25MatrixOffsetTransformBaseIdLj3ELj3EE24TransformCovariantVectorERKNS_20VariableLengthVectorIdEE[_ZNK3itk25MatrixOffsetTransformBaseIdLj3ELj3EE24TransformCovariantVectorERKNS_20VariableLengthVectorIdEE]+0x3a):
>> undefined reference to `vnl_vector<double>::vnl_vector(unsigned int)'
>> collect2: error: ld returned 1 exit status
>> make[2]: *** [Test1] Error 1
>> make[1]: *** [CMakeFiles/Test1.dir/all] Error 2
>> make: *** [all] Error 2
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>