[Rtk-users] error in ThreeDCircularProjectionGeometry GeometryType

[Howard]

Hi,

I was trying to play with the simple example to reconstruct a sphere
from the RTK wiki page. The sample code:

 // Projection matrices
  unsigned int numberOfProjections = 360;
  unsigned int firstAngle = 0;
  unsigned int angularArc = 360;
  unsigned int sid =  80; // source to isocenter distance in mm
  unsigned int sdd = 160; // source to detector distance in mm
  int isox = 0; // X coordinate on the projection image of isocenter
  int isoy = 0; // Y coordinate on the projection image of isocenter


  for(unsigned int noProj=0; noProj<numberOfProjections; noProj++) {
      double angle = (float)firstAngle + (float)noProj * angularArc /
(float)numberOfProjections;
      geometry->AddProjection(sid, sdd, angle, isox, isoy);
  }


When I compiled the code, I got an error from the line in the projection loop:

geometry->AddProjection(sid, sdd, angle, isox, isoy);

I am using an old version of RTK 1.1 but it should not matter. Can
anyone help me out? Thanks!

[chaom02 at minerva2 recon]$ make
Scanning dependencies of target Test1
[ 50%] Building CXX object CMakeFiles/Test1.dir/Test1.cxx.o
[100%] Linking CXX executable Test1
/sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
In function `itk::MatrixOffsetTransformBase<double, 3u,
3u>::GetFixedParameters() const':
rtkThreeDCircularProjectionGeometry.cxx:(.text._ZNK3itk25MatrixOffsetTransformBaseIdLj3ELj3EE18GetFixedParametersEv[_ZNK3itk25MatrixOffsetTransformBaseIdLj3ELj3EE18GetFixedParametersEv]+0x23):
undefined reference to `vnl_vector<double>::set_size(unsigned int)'
/sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
In function `itk::MatrixOffsetTransformBase<double, 3u,
3u>::SetFixedParameters(itk::OptimizerParameters<double> const&)':
rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk25MatrixOffsetTransformBaseIdLj3ELj3EE18SetFixedParametersERKNS_19OptimizerParametersIdEE[_ZN3itk25MatrixOffsetTransformBaseIdLj3ELj3EE18SetFixedParametersERKNS_19OptimizerParametersIdEE]+0x4f):
undefined reference to `vnl_vector<double>::set_size(unsigned int)'
/sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
In function `itk::CenteredEuler3DTransform<double>::SetParameters(itk::OptimizerParameters<double>
const&)':
rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk24CenteredEuler3DTransformIdE13SetParametersERKNS_19OptimizerParametersIdEE[_ZN3itk24CenteredEuler3DTransformIdE13SetParametersERKNS_19OptimizerParametersIdEE]+0x31):
undefined reference to `vnl_vector<double>::set_size(unsigned int)'
/sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
In function `itk::Euler3DTransform<double>::SetParameters(itk::OptimizerParameters<double>
const&)':
rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk16Euler3DTransformIdE13SetParametersERKNS_19OptimizerParametersIdEE[_ZN3itk16Euler3DTransformIdE13SetParametersERKNS_19OptimizerParametersIdEE]+0x40):
undefined reference to `vnl_vector<double>::set_size(unsigned int)'
/sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
In function `itk::Transform<double, 3u, 3u>::Transform(unsigned
long)':
rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk9TransformIdLj3ELj3EEC2Em[_ZN3itk9TransformIdLj3ELj3EEC5Em]+0x49):
undefined reference to `vnl_vector<double>::vnl_vector(unsigned int)'
rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk9TransformIdLj3ELj3EEC2Em[_ZN3itk9TransformIdLj3ELj3EEC5Em]+0xa3):
undefined reference to `vnl_vector<double>::vnl_vector(unsigned int)'
/sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
In function `itk::MatrixOffsetTransformBase<double, 3u,
3u>::MatrixOffsetTransformBase()':
rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk25MatrixOffsetTransformBaseIdLj3ELj3EEC2Ev[_ZN3itk25MatrixOffsetTransformBaseIdLj3ELj3EEC5Ev]+0x21b):
undefined reference to `vnl_vector<double>::set_size(unsigned int)'
/sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
In function `itk::Rigid3DTransform<double>::SetParameters(itk::OptimizerParameters<double>
const&)':
rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk16Rigid3DTransformIdE13SetParametersERKNS_19OptimizerParametersIdEE[_ZN3itk16Rigid3DTransformIdE13SetParametersERKNS_19OptimizerParametersIdEE]+0x3e):
undefined reference to `vnl_vector<double>::set_size(unsigned int)'
/sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
In function `itk::MatrixOffsetTransformBase<double, 3u,
3u>::SetParameters(itk::OptimizerParameters<double> const&)':
rtkThreeDCircularProjectionGeometry.cxx:(.text._ZN3itk25MatrixOffsetTransformBaseIdLj3ELj3EE13SetParametersERKNS_19OptimizerParametersIdEE[_ZN3itk25MatrixOffsetTransformBaseIdLj3ELj3EE13SetParametersERKNS_19OptimizerParametersIdEE]+0x43):
undefined reference to `vnl_vector<double>::set_size(unsigned int)'
/sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
In function `itk::MatrixOffsetTransformBase<double, 3u,
3u>::TransformVector(itk::VariableLengthVector<double> const&) const':
rtkThreeDCircularProjectionGeometry.cxx:(.text._ZNK3itk25MatrixOffsetTransformBaseIdLj3ELj3EE15TransformVectorERKNS_20VariableLengthVectorIdEE[_ZNK3itk25MatrixOffsetTransformBaseIdLj3ELj3EE15TransformVectorERKNS_20VariableLengthVectorIdEE]+0x2f):
undefined reference to `vnl_vector<double>::vnl_vector(unsigned int)'
/sc/orga/work/chaom02/usr/local/RTK/RTK-bin/bin/libRTK.a(rtkThreeDCircularProjectionGeometry.cxx.o):
In function `itk::MatrixOffsetTransformBase<double, 3u,
3u>::TransformCovariantVector(itk::VariableLengthVector<double>
const&) const':
rtkThreeDCircularProjectionGeometry.cxx:(.text._ZNK3itk25MatrixOffsetTransformBaseIdLj3ELj3EE24TransformCovariantVectorERKNS_20VariableLengthVectorIdEE[_ZNK3itk25MatrixOffsetTransformBaseIdLj3ELj3EE24TransformCovariantVectorERKNS_20VariableLengthVectorIdEE]+0x3a):
undefined reference to `vnl_vector<double>::vnl_vector(unsigned int)'
collect2: error: ld returned 1 exit status
make[2]: *** [Test1] Error 1
make[1]: *** [CMakeFiles/Test1.dir/all] Error 2
make: *** [all] Error 2