From Yannick.Grondin at surgiqual-institute.com  Mon Apr  1 10:44:48 2019
From: Yannick.Grondin at surgiqual-institute.com (Yannick Grondin)
Date: Mon, 1 Apr 2019 16:44:48 +0200
Subject: [Rtk-users] RTK for Python : installation failed
Message-ID: <007a01d4e899$75ac3f50$6104bdf0$@surgiqual-institute.com>

Hi RTK users,

 

We have an installation which failed, although we followed the following
commands for Python :

 

python -m pip install --upgrade pip
python -m pip install --upgrade --pre itk
python -m pip install itk-rtk

 

it failed after : python -m pip install --upgrade --pre itk

 

the error message is at the end of this email.

Do you have any idea of what we are doing wrong?

 

Thanks,

 

Yannick

____________________________

 <http://www.surgiqual-institute.com/> SQI_Logo_Mail

Yannick Grondin, PhD

Radiation Physics R&D Engineer

 <http://www.surgiqual-institute.com/> http://www.surgiqual-institute.com/

+33 (0) 4 58 00 38 08

 

Collecting itk

  Using cached
https://files.pythonhosted.org/packages/69/e3/4b25d14a0637696193a57ca5838c5e
465b31024935eace2457188d8c9071/itk-5.0rc1.tar.gz

Building wheels for collected packages: itk

  Building wheel for itk (setup.py): started

  Building wheel for itk (setup.py): still running...

  Building wheel for itk (setup.py): finished with status 'error'

  Complete output from command D:\Softwares\python\python.exe -u -c "import
setuptools,
tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycn
ry8\\itk\\setup.py';f=getattr(tokenize, 'open',
open)(__file__);code=f.read().replace('\r\n',
'\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d
C:\Users\kouka\AppData\Local\Temp\pip-wheel-g_09lifp --python-tag cp37:

  

  

 
----------------------------------------------------------------------------
----

  -- Trying "Ninja" generator

  --------------------------------

  ---------------------------

  ----------------------

  -----------------

  ------------

  -------

  --

  Not searching for unused variables given on the command line.

  -- The C compiler identification is MSVC 19.16.27027.1

  -- Check for working C compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

  -- Check for working C compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
-- works

  -- Detecting C compiler ABI info

  -- Detecting C compiler ABI info - done

  -- Detecting C compile features

  -- Detecting C compile features - done

  -- The CXX compiler identification is MSVC 19.16.27027.1

  -- Check for working CXX compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

  -- Check for working CXX compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
-- works

  -- Detecting CXX compiler ABI info

  -- Detecting CXX compiler ABI info - done

  -- Detecting CXX compile features

  -- Detecting CXX compile features - done

  -- Configuring done

  -- Generating done

  -- Build files have been written to:
C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_cmake_test_compi
le/build

  --

  -------

  ------------

  -----------------

  ----------------------

  ---------------------------

  --------------------------------

  -- Trying "Ninja" generator - success

 
----------------------------------------------------------------------------
----

  

  -- SuperBuild - ITKPythonPackage_WHEEL_NAME:itk

  -- SuperBuild -

  -- SuperBuild - ITK-source-download

  -- SuperBuild -   ITK_SOURCE_DIR:
C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.
7/cmake-build/ITKs

  -- SuperBuild - ITK-source-download[OK]

  -- SuperBuild -

  -- SuperBuild - Searching for python

  -- SuperBuild -   PYTHON_INCLUDE_DIR: D:/Softwares/python/Include

  -- SuperBuild -   PYTHON_LIBRARY: D:/Softwares/python/libs/python37.lib

  -- SuperBuild -   PYTHON_EXECUTABLE: D:/Softwares/python/python.exe

  -- SuperBuild - Searching for python[OK]

  -- SuperBuild -   DOXYGEN_EXECUTABLE:

  -- ITK CMake Cache Args -

  -- SuperBuild -

  -- SuperBuild - ITK => Requires ITK-source-download

  -- SuperBuild -   ITK_BINARY_DIR:
C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.
7/cmake-build/ITKb

  -- SuperBuild - ITK[OK]

  -- SuperBuild -

  -- SuperBuild - ITKPythonPackage => Requires ITK

  -- SuperBuild - ITKPythonPackage[OK]

  -- Configuring done

  -- Generating done

  -- Build files have been written to:
C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.
7/cmake-build

  [1/25] Creating directories for 'ITK-source-download'

  [1/25] Performing download step (git clone) for 'ITK-source-download'

  Cloning into 'ITKs'...

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  Checking out files: 100% (15746/15746), done.

  Note: checking out '3a11b90d06513'.

  

  You are in 'detached HEAD' state. You can look around, make experimental

  changes and commit them, and you can discard any commits you make in this

  state without impacting any branches by performing another checkout.

  

  If you want to create a new branch to retain commits you create, you may

  do so (now or later) by using -b with the checkout command again. Example:

  

    git checkout -b <new-branch-name>

  

  HEAD is now at 3a11b90d06 COMP: Avoid duplicate wrapping of
VectorContainer with unsigned short

  [3/25] No patch step for 'ITK-source-download'

  [4/25] Performing update step for 'ITK-source-download'

  [5/25] No configure step for 'ITK-source-download'

  [6/25] No build step for 'ITK-source-download'

  [7/25] No install step for 'ITK-source-download'

  [8/25] Completed 'ITK-source-download'

  [9/25] Creating directories for 'ITK'

  [9/25] No download step for 'ITK'

  [10/25] No update step for 'ITK'

  [11/25] No patch step for 'ITK'

  [12/25] Performing configure step for 'ITK'

  -- The CXX compiler identification is MSVC 19.16.27027.1

  -- The C compiler identification is MSVC 19.16.27027.1

  -- Check for working CXX compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

  -- Check for working CXX compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
-- works

  -- Detecting CXX compiler ABI info

  -- Detecting CXX compiler ABI info - done

  -- Detecting CXX compile features

  -- Detecting CXX compile features - done

  -- Check for working C compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

  -- Check for working C compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
-- works

  -- Detecting C compiler ABI info

  -- Detecting C compiler ABI info - done

  -- Detecting C compile features

  -- Detecting C compile features - done

  CMake Error at CMakeLists.txt:109 (message):

    ITK source code directory path length is too long (94 > 50).Please move
the

    ITK source code directory to a directory with a shorter path.

  

  

  -- Configuring incomplete, errors occurred!

  See also
"C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3
.7/cmake-build/ITKb/CMakeFiles/CMakeOutput.log".

  FAILED: ITKp/src/ITK-stamp/ITK-configure

  cmd.exe /C "cd /D
C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.
7\cmake-build\ITKb && D:\Softwares\cmake\bin\cmake.exe
-DBUILD_TESTING:BOOL=OFF
-DCMAKE_INSTALL_PREFIX:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-by
ycnry8/itk/_skbuild/win32-3.7/cmake-install
-DPY_SITE_PACKAGES_PATH:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-b
yycnry8/itk/_skbuild/win32-3.7/cmake-install
-DWRAP_ITK_INSTALL_COMPONENT_IDENTIFIER:STRING=PythonWheel
-DWRAP_ITK_INSTALL_COMPONENT_PER_MODULE:BOOL=OFF -DITK_LEGACY_SILENT:BOOL=ON
-DITK_WRAP_PYTHON:BOOL=ON -DITK_WRAP_PYTHON_LEGACY:BOOL=OFF
-DITK_WRAP_unsigned_short:BOOL=ON -DITK_WRAP_DOC:BOOL=ON
-DDOXYGEN_EXECUTABLE:FILEPATH=
-DPYTHON_INCLUDE_DIR:PATH=D:/Softwares/python/Include
-DPYTHON_LIBRARY:FILEPATH=D:/Softwares/python/libs/python37.lib
-DPYTHON_EXECUTABLE:FILEPATH=D:/Softwares/python/python.exe
-DCMAKE_BUILD_TYPE:STRING=Release
-DCMAKE_MAKE_PROGRAM:FILEPATH=D:/Softwares/visualstudio/Common7/IDE/CommonEx
tensions/Microsoft/CMake/Ninja/ninja.exe -GNinja
C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.
7/cmake-build/ITKs && D:\Softwares\cmake\bin\cmake.exe -E touch
C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.
7/cmake-build/ITKp/src/ITK-stamp/ITK-configure"

  ninja: build stopped: subcommand failed.

  Traceback (most recent call last):

    File "D:\Softwares\python\lib\site-packages\skbuild\setuptools_wrap.py",
line 578, in setup

      cmkr.make(make_args, env=env)

    File "D:\Softwares\python\lib\site-packages\skbuild\cmaker.py", line
482, in make

      os.path.abspath(CMAKE_BUILD_DIR())))

  

  An error occurred while building with CMake.

    Command:

      "cmake" "--build" "." "--target" "install" "--config" "Release" "--"

    Source directory:

      C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk

    Working directory:

 
C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.
7\cmake-build

  Please see CMake's output for more information.

  

  ----------------------------------------

  Running setup.py clean for itk

  Complete output from command D:\Softwares\python\python.exe -u -c "import
setuptools,
tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycn
ry8\\itk\\setup.py';f=getattr(tokenize, 'open',
open)(__file__);code=f.read().replace('\r\n',
'\n');f.close();exec(compile(code, __file__, 'exec'))" clean --all:

  running clean

  '_skbuild\win32-3.7\setuptools\lib' does not exist -- can't clean it

  '_skbuild\win32-3.7\setuptools\bdist.win32' does not exist -- can't clean
it

  '_skbuild\win32-3.7\setuptools\scripts-3.7' does not exist -- can't clean
it

  removing '_skbuild\win32-3.7\setuptools'

  removing '_skbuild\win32-3.7\cmake-install'

  removing '_skbuild\win32-3.7\cmake-build'

  error: [WinError 5] Access is denied:
'_skbuild\\win32-3.7\\cmake-build\\ITKs\\.git\\objects\\pack\\pack-debda3808
782fb53135b9fc9cb82b15868dc57b0.idx'

  

  ----------------------------------------

Failed to build itk

Installing collected packages: itk

  Running setup.py install for itk: started

    Running setup.py install for itk: still running...

    Running setup.py install for itk: finished with status 'error'

    Complete output from command D:\Softwares\python\python.exe -u -c
"import setuptools,
tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycn
ry8\\itk\\setup.py';f=getattr(tokenize, 'open',
open)(__file__);code=f.read().replace('\r\n',
'\n');f.close();exec(compile(code, __file__, 'exec'))" install --record
C:\Users\kouka\AppData\Local\Temp\pip-record-ri4o36nk\install-record.txt
--single-version-externally-managed --compile:

    

    

 
----------------------------------------------------------------------------
----

    -- Trying "Ninja" generator

    --------------------------------

    ---------------------------

    ----------------------

    -----------------

    ------------

    -------

   --

    Not searching for unused variables given on the command line.

    -- The C compiler identification is MSVC 19.16.27027.1

    -- Check for working C compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

    -- Check for working C compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
-- works

    -- Detecting C compiler ABI info

    -- Detecting C compiler ABI info - done

    -- Detecting C compile features

    -- Detecting C compile features - done

    -- The CXX compiler identification is MSVC 19.16.27027.1

    -- Check for working CXX compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

    -- Check for working CXX compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
-- works

    -- Detecting CXX compiler ABI info

    -- Detecting CXX compiler ABI info - done

    -- Detecting CXX compile features

    -- Detecting CXX compile features - done

    -- Configuring done

    -- Generating done

    -- Build files have been written to:
C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_cmake_test_compi
le/build

    --

    -------

    ------------

    -----------------

    ----------------------

    ---------------------------

    --------------------------------

    -- Trying "Ninja" generator - success

 
----------------------------------------------------------------------------
----

    

    -- SuperBuild - ITKPythonPackage_WHEEL_NAME:itk

    -- SuperBuild -

    -- SuperBuild - ITK-source-download

    -- SuperBuild -   ITK_SOURCE_DIR:
C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.
7/cmake-build/ITKs

    -- SuperBuild - ITK-source-download[OK]

    -- SuperBuild -

    -- SuperBuild - Searching for python

    -- SuperBuild -   PYTHON_INCLUDE_DIR: D:/Softwares/python/Include

    -- SuperBuild -   PYTHON_LIBRARY: D:/Softwares/python/libs/python37.lib

    -- SuperBuild -   PYTHON_EXECUTABLE: D:/Softwares/python/python.exe

    -- SuperBuild - Searching for python[OK]

    -- SuperBuild -   DOXYGEN_EXECUTABLE:

    -- ITK CMake Cache Args -

    -- SuperBuild -

    -- SuperBuild - ITK => Requires ITK-source-download

    -- SuperBuild -   ITK_BINARY_DIR:
C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.
7/cmake-build/ITKb

    -- SuperBuild - ITK[OK]

    -- SuperBuild -

    -- SuperBuild - ITKPythonPackage => Requires ITK

    -- SuperBuild - ITKPythonPackage[OK]

    -- Configuring done

    -- Generating done

    -- Build files have been written to:
C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.
7/cmake-build

    [1/25] Creating directories for 'ITK-source-download'

    [1/25] Performing download step (git clone) for 'ITK-source-download'

    Cloning into 'ITKs'...

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    Checking out files: 100% (15746/15746), done.

    Note: checking out '3a11b90d06513'.

    

    You are in 'detached HEAD' state. You can look around, make experimental

    changes and commit them, and you can discard any commits you make in
this

    state without impacting any branches by performing another checkout.

    

    If you want to create a new branch to retain commits you create, you may

    do so (now or later) by using -b with the checkout command again.
Example:

    

      git checkout -b <new-branch-name>

    

    HEAD is now at 3a11b90d06 COMP: Avoid duplicate wrapping of
VectorContainer with unsigned short

    [3/25] No patch step for 'ITK-source-download'

    [4/25] Performing update step for 'ITK-source-download'

    [5/25] No configure step for 'ITK-source-download'

    [6/25] No build step for 'ITK-source-download'

    [7/25] No install step for 'ITK-source-download'

    [8/25] Completed 'ITK-source-download'

    [9/25] Creating directories for 'ITK'

    [9/25] No download step for 'ITK'

    [10/25] No update step for 'ITK'

    [11/25] No patch step for 'ITK'

    [12/25] Performing configure step for 'ITK'

    -- The CXX compiler identification is MSVC 19.16.27027.1

    -- The C compiler identification is MSVC 19.16.27027.1

    -- Check for working CXX compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

    -- Check for working CXX compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
-- works

    -- Detecting CXX compiler ABI info

    -- Detecting CXX compiler ABI info - done

    -- Detecting CXX compile features

    -- Detecting CXX compile features - done

    -- Check for working C compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

    -- Check for working C compiler:
D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
-- works

    -- Detecting C compiler ABI info

    -- Detecting C compiler ABI info - done

    -- Detecting C compile features

    -- Detecting C compile features - done

    CMake Error at CMakeLists.txt:109 (message):

      ITK source code directory path length is too long (94 > 50).Please
move the

      ITK source code directory to a directory with a shorter path.

    

    

    -- Configuring incomplete, errors occurred!

    See also
"C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3
.7/cmake-build/ITKb/CMakeFiles/CMakeOutput.log".

    FAILED: ITKp/src/ITK-stamp/ITK-configure

    cmd.exe /C "cd /D
C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.
7\cmake-build\ITKb && D:\Softwares\cmake\bin\cmake.exe
-DBUILD_TESTING:BOOL=OFF
-DCMAKE_INSTALL_PREFIX:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-by
ycnry8/itk/_skbuild/win32-3.7/cmake-install
-DPY_SITE_PACKAGES_PATH:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-b
yycnry8/itk/_skbuild/win32-3.7/cmake-install
-DWRAP_ITK_INSTALL_COMPONENT_IDENTIFIER:STRING=PythonWheel
-DWRAP_ITK_INSTALL_COMPONENT_PER_MODULE:BOOL=OFF -DITK_LEGACY_SILENT:BOOL=ON
-DITK_WRAP_PYTHON:BOOL=ON -DITK_WRAP_PYTHON_LEGACY:BOOL=OFF
-DITK_WRAP_unsigned_short:BOOL=ON -DITK_WRAP_DOC:BOOL=ON
-DDOXYGEN_EXECUTABLE:FILEPATH=
-DPYTHON_INCLUDE_DIR:PATH=D:/Softwares/python/Include
-DPYTHON_LIBRARY:FILEPATH=D:/Softwares/python/libs/python37.lib
-DPYTHON_EXECUTABLE:FILEPATH=D:/Softwares/python/python.exe
-DCMAKE_BUILD_TYPE:STRING=Release
-DCMAKE_MAKE_PROGRAM:FILEPATH=D:/Softwares/visualstudio/Common7/IDE/CommonEx
tensions/Microsoft/CMake/Ninja/ninja.exe -GNinja
C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.
7/cmake-build/ITKs && D:\Softwares\cmake\bin\cmake.exe -E touch
C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.
7/cmake-build/ITKp/src/ITK-stamp/ITK-configure"

    ninja: build stopped: subcommand failed.

    Traceback (most recent call last):

      File
"D:\Softwares\python\lib\site-packages\skbuild\setuptools_wrap.py", line
578, in setup

        cmkr.make(make_args, env=env)

      File "D:\Softwares\python\lib\site-packages\skbuild\cmaker.py", line
482, in make

        os.path.abspath(CMAKE_BUILD_DIR())))

    

    An error occurred while building with CMake.

      Command:

        "cmake" "--build" "." "--target" "install" "--config" "Release" "--"

      Source directory:

        C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk

      Working directory:

 
C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.
7\cmake-build

    Please see CMake's output for more information.

    

    ----------------------------------------

  Failed building wheel for itk

  Failed cleaning build dir for itk

Command "D:\Softwares\python\python.exe -u -c "import setuptools,
tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycn
ry8\\itk\\setup.py';f=getattr(tokenize, 'open',
open)(__file__);code=f.read().replace('\r\n',
'\n');f.close();exec(compile(code, __file__, 'exec'))" install --record
C:\Users\kouka\AppData\Local\Temp\pip-record-ri4o36nk\install-record.txt
--single-version-externally-managed --compile" failed with error code 1 in
C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\

 



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https://www.avast.com/antivirus
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From simon.rit at creatis.insa-lyon.fr  Tue Apr  2 03:07:05 2019
From: simon.rit at creatis.insa-lyon.fr (Simon Rit)
Date: Tue, 2 Apr 2019 09:07:05 +0200
Subject: [Rtk-users] RTK for Python : installation failed
In-Reply-To: <007a01d4e899$75ac3f50$6104bdf0$@surgiqual-institute.com>
References: <007a01d4e899$75ac3f50$6104bdf0$@surgiqual-institute.com>
Message-ID: <CAF0oig21GjjYRyyS_RNGPC+Wm-xnzuhRZ5cqD4J4kmZbJ+n++g@mail.gmail.com>

Hi Yannick,
It's weird, it's trying to compile the package and I have no idea why. Are
you on a 32-bit machine? It may be the cause, there is no pre-compiled
version for (old) 32-bit Windows.
Since it's an ITK problem, I think the best is to ask the specialists on
http://discourse.itk.org/.
Simon

On Tue, Apr 2, 2019 at 12:02 AM Yannick Grondin <
Yannick.Grondin at surgiqual-institute.com> wrote:

> Hi RTK users,
>
>
>
> We have an installation which failed, although we followed the following
> commands for Python :
>
>
>
> python -m pip install --upgrade pip
> python -m pip install --upgrade --pre itk
> python -m pip install itk-rtk
>
>
>
> it failed after : python -m pip install --upgrade --pre itk
>
>
>
> the error message is at the end of this email.
>
> Do you have any idea of what we are doing wrong?
>
>
>
> Thanks,
>
>
>
> Yannick
>
> ____________________________
>
> [image: SQI_Logo_Mail] <http://www.surgiqual-institute.com/>
>
> *Yannick Grondin, PhD*
>
> *Radiation Physics R&D Engineer*
>
> http://www.surgiqual-institute.com/
>
> +33 (0) 4 58 00 38 08
>
>
>
> Collecting itk
>
>   Using cached
> https://files.pythonhosted.org/packages/69/e3/4b25d14a0637696193a57ca5838c5e465b31024935eace2457188d8c9071/itk-5.0rc1.tar.gz
>
> Building wheels for collected packages: itk
>
>   Building wheel for itk (setup.py): started
>
>   Building wheel for itk (setup.py): still running...
>
>   Building wheel for itk (setup.py): finished with status 'error'
>
>   Complete output from command D:\Softwares\python\python.exe -u -c
> "import setuptools,
> tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize,
> 'open', open)(__file__);code=f.read().replace('\r\n',
> '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d
> C:\Users\kouka\AppData\Local\Temp\pip-wheel-g_09lifp --python-tag cp37:
>
>
>
>
>
>
>   --------------------------------------------------------------------------------
>
>   -- Trying "Ninja" generator
>
>   --------------------------------
>
>   ---------------------------
>
>   ----------------------
>
>   -----------------
>
>   ------------
>
>   -------
>
>   --
>
>   Not searching for unused variables given on the command line.
>
>   -- The C compiler identification is MSVC 19.16.27027.1
>
>   -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>   -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>   -- Detecting C compiler ABI info
>
>   -- Detecting C compiler ABI info - done
>
>   -- Detecting C compile features
>
>   -- Detecting C compile features - done
>
>   -- The CXX compiler identification is MSVC 19.16.27027.1
>
>   -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>   -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>   -- Detecting CXX compiler ABI info
>
>   -- Detecting CXX compiler ABI info - done
>
>   -- Detecting CXX compile features
>
>   -- Detecting CXX compile features - done
>
>   -- Configuring done
>
>   -- Generating done
>
>   -- Build files have been written to:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_cmake_test_compile/build
>
>   --
>
>   -------
>
>   ------------
>
>   -----------------
>
>   ----------------------
>
>   ---------------------------
>
>   --------------------------------
>
>   -- Trying "Ninja" generator - success
>
>
> --------------------------------------------------------------------------------
>
>
>
>   -- SuperBuild - ITKPythonPackage_WHEEL_NAME:itk
>
>   -- SuperBuild -
>
>   -- SuperBuild - ITK-source-download
>
>   -- SuperBuild -   ITK_SOURCE_DIR:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs
>
>   -- SuperBuild - ITK-source-download[OK]
>
>   -- SuperBuild -
>
>   -- SuperBuild - Searching for python
>
>   -- SuperBuild -   PYTHON_INCLUDE_DIR: D:/Softwares/python/Include
>
>   -- SuperBuild -   PYTHON_LIBRARY: D:/Softwares/python/libs/python37.lib
>
>   -- SuperBuild -   PYTHON_EXECUTABLE: D:/Softwares/python/python.exe
>
>   -- SuperBuild - Searching for python[OK]
>
>   -- SuperBuild -   DOXYGEN_EXECUTABLE:
>
>   -- ITK CMake Cache Args -
>
>   -- SuperBuild -
>
>   -- SuperBuild - ITK => Requires ITK-source-download
>
>   -- SuperBuild -   ITK_BINARY_DIR:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb
>
>   -- SuperBuild - ITK[OK]
>
>   -- SuperBuild -
>
>   -- SuperBuild - ITKPythonPackage => Requires ITK
>
>   -- SuperBuild - ITKPythonPackage[OK]
>
>   -- Configuring done
>
>   -- Generating done
>
>   -- Build files have been written to:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build
>
>   [1/25] Creating directories for 'ITK-source-download'
>
>   [1/25] Performing download step (git clone) for 'ITK-source-download'
>
>   Cloning into 'ITKs'...
>
>   Checking out files:   7% (1177/15746)
>
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>
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>
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>
>   Checking out files:  91% (14329/15746)
>
>   Checking out files:  92% (14487/15746)
>
>   Checking out files:  93% (14644/15746)
>
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>
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>
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>
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>
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>
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>
>   Checking out files:  99% (15589/15746)
>
>   Checking out files: 100% (15746/15746)
>
>   Checking out files: 100% (15746/15746), done.
>
>   Note: checking out '3a11b90d06513'.
>
>
>
>   You are in 'detached HEAD' state. You can look around, make experimental
>
>   changes and commit them, and you can discard any commits you make in this
>
>   state without impacting any branches by performing another checkout.
>
>
>
>   If you want to create a new branch to retain commits you create, you may
>
>   do so (now or later) by using -b with the checkout command again.
> Example:
>
>
>
>     git checkout -b <new-branch-name>
>
>
>
>   HEAD is now at 3a11b90d06 COMP: Avoid duplicate wrapping of
> VectorContainer with unsigned short
>
>   [3/25] No patch step for 'ITK-source-download'
>
>   [4/25] Performing update step for 'ITK-source-download'
>
>   [5/25] No configure step for 'ITK-source-download'
>
>   [6/25] No build step for 'ITK-source-download'
>
>   [7/25] No install step for 'ITK-source-download'
>
>   [8/25] Completed 'ITK-source-download'
>
>   [9/25] Creating directories for 'ITK'
>
>   [9/25] No download step for 'ITK'
>
>   [10/25] No update step for 'ITK'
>
>   [11/25] No patch step for 'ITK'
>
>   [12/25] Performing configure step for 'ITK'
>
>   -- The CXX compiler identification is MSVC 19.16.27027.1
>
>   -- The C compiler identification is MSVC 19.16.27027.1
>
>   -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>   -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>   -- Detecting CXX compiler ABI info
>
>   -- Detecting CXX compiler ABI info - done
>
>   -- Detecting CXX compile features
>
>   -- Detecting CXX compile features - done
>
>   -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>   -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>   -- Detecting C compiler ABI info
>
>   -- Detecting C compiler ABI info - done
>
>   -- Detecting C compile features
>
>   -- Detecting C compile features - done
>
>   CMake Error at CMakeLists.txt:109 (message):
>
>     ITK source code directory path length is too long (94 > 50).Please
> move the
>
>     ITK source code directory to a directory with a shorter path.
>
>
>
>
>
>   -- Configuring incomplete, errors occurred!
>
>   See also
> "C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb/CMakeFiles/CMakeOutput.log".
>
>   FAILED: ITKp/src/ITK-stamp/ITK-configure
>
>   cmd.exe /C "cd /D
> C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build\ITKb
> && D:\Softwares\cmake\bin\cmake.exe -DBUILD_TESTING:BOOL=OFF
> -DCMAKE_INSTALL_PREFIX:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install
> -DPY_SITE_PACKAGES_PATH:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install
> -DWRAP_ITK_INSTALL_COMPONENT_IDENTIFIER:STRING=PythonWheel
> -DWRAP_ITK_INSTALL_COMPONENT_PER_MODULE:BOOL=OFF
> -DITK_LEGACY_SILENT:BOOL=ON -DITK_WRAP_PYTHON:BOOL=ON
> -DITK_WRAP_PYTHON_LEGACY:BOOL=OFF -DITK_WRAP_unsigned_short:BOOL=ON
> -DITK_WRAP_DOC:BOOL=ON -DDOXYGEN_EXECUTABLE:FILEPATH=
> -DPYTHON_INCLUDE_DIR:PATH=D:/Softwares/python/Include
> -DPYTHON_LIBRARY:FILEPATH=D:/Softwares/python/libs/python37.lib
> -DPYTHON_EXECUTABLE:FILEPATH=D:/Softwares/python/python.exe
> -DCMAKE_BUILD_TYPE:STRING=Release
> -DCMAKE_MAKE_PROGRAM:FILEPATH=D:/Softwares/visualstudio/Common7/IDE/CommonExtensions/Microsoft/CMake/Ninja/ninja.exe
> -GNinja
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs
> && D:\Softwares\cmake\bin\cmake.exe -E touch
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKp/src/ITK-stamp/ITK-configure"
>
>   ninja: build stopped: subcommand failed.
>
>   Traceback (most recent call last):
>
>     File
> "D:\Softwares\python\lib\site-packages\skbuild\setuptools_wrap.py", line
> 578, in setup
>
>       cmkr.make(make_args, env=env)
>
>     File "D:\Softwares\python\lib\site-packages\skbuild\cmaker.py", line
> 482, in make
>
>       os.path.abspath(CMAKE_BUILD_DIR())))
>
>
>
>   An error occurred while building with CMake.
>
>     Command:
>
>       "cmake" "--build" "." "--target" "install" "--config" "Release" "--"
>
>     Source directory:
>
>       C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk
>
>     Working directory:
>
>
> C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build
>
>   Please see CMake's output for more information.
>
>
>
>   ----------------------------------------
>
>   Running setup.py clean for itk
>
>   Complete output from command D:\Softwares\python\python.exe -u -c
> "import setuptools,
> tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize,
> 'open', open)(__file__);code=f.read().replace('\r\n',
> '\n');f.close();exec(compile(code, __file__, 'exec'))" clean --all:
>
>   running clean
>
>   '_skbuild\win32-3.7\setuptools\lib' does not exist -- can't clean it
>
>   '_skbuild\win32-3.7\setuptools\bdist.win32' does not exist -- can't
> clean it
>
>   '_skbuild\win32-3.7\setuptools\scripts-3.7' does not exist -- can't
> clean it
>
>   removing '_skbuild\win32-3.7\setuptools'
>
>   removing '_skbuild\win32-3.7\cmake-install'
>
>   removing '_skbuild\win32-3.7\cmake-build'
>
>   error: [WinError 5] Access is denied:
> '_skbuild\\win32-3.7\\cmake-build\\ITKs\\.git\\objects\\pack\\pack-debda3808782fb53135b9fc9cb82b15868dc57b0.idx'
>
>
>
>   ----------------------------------------
>
> Failed to build itk
>
> Installing collected packages: itk
>
>   Running setup.py install for itk: started
>
>     Running setup.py install for itk: still running...
>
>     Running setup.py install for itk: finished with status 'error'
>
>     Complete output from command D:\Softwares\python\python.exe -u -c
> "import setuptools,
> tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize,
> 'open', open)(__file__);code=f.read().replace('\r\n',
> '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record
> C:\Users\kouka\AppData\Local\Temp\pip-record-ri4o36nk\install-record.txt
> --single-version-externally-managed --compile:
>
>
>
>
>
>
>     --------------------------------------------------------------------------------
>
>     -- Trying "Ninja" generator
>
>     --------------------------------
>
>     ---------------------------
>
>     ----------------------
>
>     -----------------
>
>     ------------
>
>     -------
>
>    --
>
>     Not searching for unused variables given on the command line.
>
>     -- The C compiler identification is MSVC 19.16.27027.1
>
>     -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>     -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>     -- Detecting C compiler ABI info
>
>     -- Detecting C compiler ABI info - done
>
>     -- Detecting C compile features
>
>     -- Detecting C compile features - done
>
>     -- The CXX compiler identification is MSVC 19.16.27027.1
>
>     -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>     -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>     -- Detecting CXX compiler ABI info
>
>     -- Detecting CXX compiler ABI info - done
>
>     -- Detecting CXX compile features
>
>     -- Detecting CXX compile features - done
>
>     -- Configuring done
>
>     -- Generating done
>
>     -- Build files have been written to:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_cmake_test_compile/build
>
>     --
>
>     -------
>
>     ------------
>
>     -----------------
>
>     ----------------------
>
>     ---------------------------
>
>     --------------------------------
>
>     -- Trying "Ninja" generator - success
>
>
> --------------------------------------------------------------------------------
>
>
>
>     -- SuperBuild - ITKPythonPackage_WHEEL_NAME:itk
>
>     -- SuperBuild -
>
>     -- SuperBuild - ITK-source-download
>
>     -- SuperBuild -   ITK_SOURCE_DIR:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs
>
>     -- SuperBuild - ITK-source-download[OK]
>
>     -- SuperBuild -
>
>     -- SuperBuild - Searching for python
>
>     -- SuperBuild -   PYTHON_INCLUDE_DIR: D:/Softwares/python/Include
>
>     -- SuperBuild -   PYTHON_LIBRARY: D:/Softwares/python/libs/python37.lib
>
>     -- SuperBuild -   PYTHON_EXECUTABLE: D:/Softwares/python/python.exe
>
>     -- SuperBuild - Searching for python[OK]
>
>     -- SuperBuild -   DOXYGEN_EXECUTABLE:
>
>     -- ITK CMake Cache Args -
>
>     -- SuperBuild -
>
>     -- SuperBuild - ITK => Requires ITK-source-download
>
>     -- SuperBuild -   ITK_BINARY_DIR:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb
>
>     -- SuperBuild - ITK[OK]
>
>     -- SuperBuild -
>
>     -- SuperBuild - ITKPythonPackage => Requires ITK
>
>     -- SuperBuild - ITKPythonPackage[OK]
>
>     -- Configuring done
>
>     -- Generating done
>
>     -- Build files have been written to:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build
>
>     [1/25] Creating directories for 'ITK-source-download'
>
>     [1/25] Performing download step (git clone) for 'ITK-source-download'
>
>     Cloning into 'ITKs'...
>
>     Checking out files:  10% (1615/15746)
>
>     Checking out files:  11% (1733/15746)
>
>     Checking out files:  12% (1890/15746)
>
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>
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>
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>
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>
>     Checking out files:  99% (15589/15746)
>
>     Checking out files: 100% (15746/15746)
>
>     Checking out files: 100% (15746/15746), done.
>
>     Note: checking out '3a11b90d06513'.
>
>
>
>     You are in 'detached HEAD' state. You can look around, make
> experimental
>
>     changes and commit them, and you can discard any commits you make in
> this
>
>     state without impacting any branches by performing another checkout.
>
>
>
>     If you want to create a new branch to retain commits you create, you
> may
>
>     do so (now or later) by using -b with the checkout command again.
> Example:
>
>
>
>       git checkout -b <new-branch-name>
>
>
>
>     HEAD is now at 3a11b90d06 COMP: Avoid duplicate wrapping of
> VectorContainer with unsigned short
>
>     [3/25] No patch step for 'ITK-source-download'
>
>     [4/25] Performing update step for 'ITK-source-download'
>
>     [5/25] No configure step for 'ITK-source-download'
>
>     [6/25] No build step for 'ITK-source-download'
>
>     [7/25] No install step for 'ITK-source-download'
>
>     [8/25] Completed 'ITK-source-download'
>
>     [9/25] Creating directories for 'ITK'
>
>     [9/25] No download step for 'ITK'
>
>     [10/25] No update step for 'ITK'
>
>     [11/25] No patch step for 'ITK'
>
>     [12/25] Performing configure step for 'ITK'
>
>     -- The CXX compiler identification is MSVC 19.16.27027.1
>
>     -- The C compiler identification is MSVC 19.16.27027.1
>
>     -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>     -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>     -- Detecting CXX compiler ABI info
>
>     -- Detecting CXX compiler ABI info - done
>
>     -- Detecting CXX compile features
>
>     -- Detecting CXX compile features - done
>
>     -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>     -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>     -- Detecting C compiler ABI info
>
>     -- Detecting C compiler ABI info - done
>
>     -- Detecting C compile features
>
>     -- Detecting C compile features - done
>
>     CMake Error at CMakeLists.txt:109 (message):
>
>       ITK source code directory path length is too long (94 > 50).Please
> move the
>
>       ITK source code directory to a directory with a shorter path.
>
>
>
>
>
>     -- Configuring incomplete, errors occurred!
>
>     See also
> "C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb/CMakeFiles/CMakeOutput.log".
>
>     FAILED: ITKp/src/ITK-stamp/ITK-configure
>
>     cmd.exe /C "cd /D
> C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build\ITKb
> && D:\Softwares\cmake\bin\cmake.exe -DBUILD_TESTING:BOOL=OFF
> -DCMAKE_INSTALL_PREFIX:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install
> -DPY_SITE_PACKAGES_PATH:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install
> -DWRAP_ITK_INSTALL_COMPONENT_IDENTIFIER:STRING=PythonWheel
> -DWRAP_ITK_INSTALL_COMPONENT_PER_MODULE:BOOL=OFF
> -DITK_LEGACY_SILENT:BOOL=ON -DITK_WRAP_PYTHON:BOOL=ON
> -DITK_WRAP_PYTHON_LEGACY:BOOL=OFF -DITK_WRAP_unsigned_short:BOOL=ON
> -DITK_WRAP_DOC:BOOL=ON -DDOXYGEN_EXECUTABLE:FILEPATH=
> -DPYTHON_INCLUDE_DIR:PATH=D:/Softwares/python/Include
> -DPYTHON_LIBRARY:FILEPATH=D:/Softwares/python/libs/python37.lib
> -DPYTHON_EXECUTABLE:FILEPATH=D:/Softwares/python/python.exe
> -DCMAKE_BUILD_TYPE:STRING=Release
> -DCMAKE_MAKE_PROGRAM:FILEPATH=D:/Softwares/visualstudio/Common7/IDE/CommonExtensions/Microsoft/CMake/Ninja/ninja.exe
> -GNinja
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs
> && D:\Softwares\cmake\bin\cmake.exe -E touch
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKp/src/ITK-stamp/ITK-configure"
>
>     ninja: build stopped: subcommand failed.
>
>     Traceback (most recent call last):
>
>       File
> "D:\Softwares\python\lib\site-packages\skbuild\setuptools_wrap.py", line
> 578, in setup
>
>         cmkr.make(make_args, env=env)
>
>       File "D:\Softwares\python\lib\site-packages\skbuild\cmaker.py", line
> 482, in make
>
>         os.path.abspath(CMAKE_BUILD_DIR())))
>
>
>
>     An error occurred while building with CMake.
>
>       Command:
>
>         "cmake" "--build" "." "--target" "install" "--config" "Release"
> "--"
>
>       Source directory:
>
>         C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk
>
>       Working directory:
>
>
> C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build
>
>     Please see CMake's output for more information.
>
>
>
>     ----------------------------------------
>
>   Failed building wheel for itk
>
>   Failed cleaning build dir for itk
>
> Command "D:\Softwares\python\python.exe -u -c "import setuptools,
> tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize,
> 'open', open)(__file__);code=f.read().replace('\r\n',
> '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record
> C:\Users\kouka\AppData\Local\Temp\pip-record-ri4o36nk\install-record.txt
> --single-version-externally-managed --compile" failed with error code 1 in
> C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\
>
>
>
>
> ------------------------------
> [image: Avast logo] <https://www.avast.com/antivirus>
>
> L'absence de virus dans ce courrier ?lectronique a ?t? v?rifi?e par le
> logiciel antivirus Avast.
> www.avast.com <https://www.avast.com/antivirus>
>
> <#m_6473172331006687137_DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>
> _______________________________________________
> Rtk-users mailing list
> Rtk-users at public.kitware.com
> https://public.kitware.com/mailman/listinfo/rtk-users
>
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From simon.rit at creatis.insa-lyon.fr  Tue Apr  2 03:44:34 2019
From: simon.rit at creatis.insa-lyon.fr (Simon Rit)
Date: Tue, 2 Apr 2019 09:44:34 +0200
Subject: [Rtk-users] RTK for Python : installation failed
In-Reply-To: <000f01d4e926$d80089d0$88019d70$@surgiqual-institute.com>
References: <007a01d4e899$75ac3f50$6104bdf0$@surgiqual-institute.com>
 <CAF0oig21GjjYRyyS_RNGPC+Wm-xnzuhRZ5cqD4J4kmZbJ+n++g@mail.gmail.com>
 <000f01d4e926$d80089d0$88019d70$@surgiqual-institute.com>
Message-ID: <CAF0oig3CUyqwx2sGrr5YQYXxCukW_VaZi8SX+4zRfdJRy2Tafw@mail.gmail.com>

I'm surprised that it mentions win32. Is the used python 64 bit?

On Tue, Apr 2, 2019 at 9:41 AM Yannick Grondin <
Yannick.Grondin at surgiqual-institute.com> wrote:

> Hi Simon,
>
>
>
> No, it is a 64-bit machine (with Windows 10).
>
> Thanks anyway, I will ask to ITK.
>
> Regards,
>
> Yannick
>
>
>
>
>
> *De :* Simon Rit [mailto:simon.rit at creatis.insa-lyon.fr]
> *Envoy? :* mardi 2 avril 2019 09:07
> *? :* Yannick Grondin
> *Cc :* rtk-users
> *Objet :* Re: [Rtk-users] RTK for Python : installation failed
>
>
>
> Hi Yannick,
>
> It's weird, it's trying to compile the package and I have no idea why. Are
> you on a 32-bit machine? It may be the cause, there is no pre-compiled
> version for (old) 32-bit Windows.
>
> Since it's an ITK problem, I think the best is to ask the specialists on
> http://discourse.itk.org/.
>
> Simon
>
>
>
> On Tue, Apr 2, 2019 at 12:02 AM Yannick Grondin <
> Yannick.Grondin at surgiqual-institute.com> wrote:
>
> Hi RTK users,
>
>
>
> We have an installation which failed, although we followed the following
> commands for Python :
>
>
>
> python -m pip install --upgrade pip
> python -m pip install --upgrade --pre itk
> python -m pip install itk-rtk
>
>
>
> it failed after : python -m pip install --upgrade --pre itk
>
>
>
> the error message is at the end of this email.
>
> Do you have any idea of what we are doing wrong?
>
>
>
> Thanks,
>
>
>
> Yannick
>
> ____________________________
>
> [image: SQI_Logo_Mail] <http://www.surgiqual-institute.com/>
>
> *Yannick Grondin, PhD*
>
> *Radiation Physics R&D Engineer*
>
> http://www.surgiqual-institute.com/
>
> +33 (0) 4 58 00 38 08
>
>
>
> Collecting itk
>
>   Using cached
> https://files.pythonhosted.org/packages/69/e3/4b25d14a0637696193a57ca5838c5e465b31024935eace2457188d8c9071/itk-5.0rc1.tar.gz
>
> Building wheels for collected packages: itk
>
>   Building wheel for itk (setup.py): started
>
>   Building wheel for itk (setup.py): still running...
>
>   Building wheel for itk (setup.py): finished with status 'error'
>
>   Complete output from command D:\Softwares\python\python.exe -u -c
> "import setuptools,
> tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize,
> 'open', open)(__file__);code=f.read().replace('\r\n',
> '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d
> C:\Users\kouka\AppData\Local\Temp\pip-wheel-g_09lifp --python-tag cp37:
>
>
>
>
>
>
>   --------------------------------------------------------------------------------
>
>   -- Trying "Ninja" generator
>
>   --------------------------------
>
>   ---------------------------
>
>   ----------------------
>
>   -----------------
>
>   ------------
>
>   -------
>
>   --
>
>   Not searching for unused variables given on the command line.
>
>   -- The C compiler identification is MSVC 19.16.27027.1
>
>   -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>   -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>   -- Detecting C compiler ABI info
>
>   -- Detecting C compiler ABI info - done
>
>   -- Detecting C compile features
>
>   -- Detecting C compile features - done
>
>   -- The CXX compiler identification is MSVC 19.16.27027.1
>
>   -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>   -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>   -- Detecting CXX compiler ABI info
>
>   -- Detecting CXX compiler ABI info - done
>
>   -- Detecting CXX compile features
>
>   -- Detecting CXX compile features - done
>
>   -- Configuring done
>
>   -- Generating done
>
>   -- Build files have been written to:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_cmake_test_compile/build
>
>   --
>
>   -------
>
>   ------------
>
>   -----------------
>
>   ----------------------
>
>   ---------------------------
>
>   --------------------------------
>
>   -- Trying "Ninja" generator - success
>
>
> --------------------------------------------------------------------------------
>
>
>
>   -- SuperBuild - ITKPythonPackage_WHEEL_NAME:itk
>
>   -- SuperBuild -
>
>   -- SuperBuild - ITK-source-download
>
>   -- SuperBuild -   ITK_SOURCE_DIR:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs
>
>   -- SuperBuild - ITK-source-download[OK]
>
>   -- SuperBuild -
>
>   -- SuperBuild - Searching for python
>
>   -- SuperBuild -   PYTHON_INCLUDE_DIR: D:/Softwares/python/Include
>
>   -- SuperBuild -   PYTHON_LIBRARY: D:/Softwares/python/libs/python37.lib
>
>   -- SuperBuild -   PYTHON_EXECUTABLE: D:/Softwares/python/python.exe
>
>   -- SuperBuild - Searching for python[OK]
>
>   -- SuperBuild -   DOXYGEN_EXECUTABLE:
>
>   -- ITK CMake Cache Args -
>
>   -- SuperBuild -
>
>   -- SuperBuild - ITK => Requires ITK-source-download
>
>   -- SuperBuild -   ITK_BINARY_DIR:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb
>
>   -- SuperBuild - ITK[OK]
>
>   -- SuperBuild -
>
>   -- SuperBuild - ITKPythonPackage => Requires ITK
>
>   -- SuperBuild - ITKPythonPackage[OK]
>
>   -- Configuring done
>
>   -- Generating done
>
>   -- Build files have been written to:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build
>
>   [1/25] Creating directories for 'ITK-source-download'
>
>   [1/25] Performing download step (git clone) for 'ITK-source-download'
>
>   Cloning into 'ITKs'...
>
>   Checking out files:   7% (1177/15746)
>
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>   Checking out files: 100% (15746/15746)
>
>   Checking out files: 100% (15746/15746), done.
>
>   Note: checking out '3a11b90d06513'.
>
>
>
>   You are in 'detached HEAD' state. You can look around, make experimental
>
>   changes and commit them, and you can discard any commits you make in this
>
>   state without impacting any branches by performing another checkout.
>
>
>
>   If you want to create a new branch to retain commits you create, you may
>
>   do so (now or later) by using -b with the checkout command again.
> Example:
>
>
>
>     git checkout -b <new-branch-name>
>
>
>
>   HEAD is now at 3a11b90d06 COMP: Avoid duplicate wrapping of
> VectorContainer with unsigned short
>
>   [3/25] No patch step for 'ITK-source-download'
>
>   [4/25] Performing update step for 'ITK-source-download'
>
>   [5/25] No configure step for 'ITK-source-download'
>
>   [6/25] No build step for 'ITK-source-download'
>
>   [7/25] No install step for 'ITK-source-download'
>
>   [8/25] Completed 'ITK-source-download'
>
>   [9/25] Creating directories for 'ITK'
>
>   [9/25] No download step for 'ITK'
>
>   [10/25] No update step for 'ITK'
>
>   [11/25] No patch step for 'ITK'
>
>   [12/25] Performing configure step for 'ITK'
>
>   -- The CXX compiler identification is MSVC 19.16.27027.1
>
>   -- The C compiler identification is MSVC 19.16.27027.1
>
>   -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>   -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>   -- Detecting CXX compiler ABI info
>
>   -- Detecting CXX compiler ABI info - done
>
>   -- Detecting CXX compile features
>
>   -- Detecting CXX compile features - done
>
>   -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>   -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>   -- Detecting C compiler ABI info
>
>   -- Detecting C compiler ABI info - done
>
>   -- Detecting C compile features
>
>   -- Detecting C compile features - done
>
>   CMake Error at CMakeLists.txt:109 (message):
>
>     ITK source code directory path length is too long (94 > 50).Please
> move the
>
>     ITK source code directory to a directory with a shorter path.
>
>
>
>
>
>   -- Configuring incomplete, errors occurred!
>
>   See also
> "C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb/CMakeFiles/CMakeOutput.log".
>
>   FAILED: ITKp/src/ITK-stamp/ITK-configure
>
>   cmd.exe /C "cd /D
> C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build\ITKb
> && D:\Softwares\cmake\bin\cmake.exe -DBUILD_TESTING:BOOL=OFF
> -DCMAKE_INSTALL_PREFIX:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install
> -DPY_SITE_PACKAGES_PATH:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install
> -DWRAP_ITK_INSTALL_COMPONENT_IDENTIFIER:STRING=PythonWheel
> -DWRAP_ITK_INSTALL_COMPONENT_PER_MODULE:BOOL=OFF
> -DITK_LEGACY_SILENT:BOOL=ON -DITK_WRAP_PYTHON:BOOL=ON
> -DITK_WRAP_PYTHON_LEGACY:BOOL=OFF -DITK_WRAP_unsigned_short:BOOL=ON
> -DITK_WRAP_DOC:BOOL=ON -DDOXYGEN_EXECUTABLE:FILEPATH=
> -DPYTHON_INCLUDE_DIR:PATH=D:/Softwares/python/Include
> -DPYTHON_LIBRARY:FILEPATH=D:/Softwares/python/libs/python37.lib
> -DPYTHON_EXECUTABLE:FILEPATH=D:/Softwares/python/python.exe
> -DCMAKE_BUILD_TYPE:STRING=Release
> -DCMAKE_MAKE_PROGRAM:FILEPATH=D:/Softwares/visualstudio/Common7/IDE/CommonExtensions/Microsoft/CMake/Ninja/ninja.exe
> -GNinja
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs
> && D:\Softwares\cmake\bin\cmake.exe -E touch
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKp/src/ITK-stamp/ITK-configure"
>
>   ninja: build stopped: subcommand failed.
>
>   Traceback (most recent call last):
>
>     File
> "D:\Softwares\python\lib\site-packages\skbuild\setuptools_wrap.py", line
> 578, in setup
>
>       cmkr.make(make_args, env=env)
>
>     File "D:\Softwares\python\lib\site-packages\skbuild\cmaker.py", line
> 482, in make
>
>       os.path.abspath(CMAKE_BUILD_DIR())))
>
>
>
>   An error occurred while building with CMake.
>
>     Command:
>
>       "cmake" "--build" "." "--target" "install" "--config" "Release" "--"
>
>     Source directory:
>
>       C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk
>
>     Working directory:
>
>
> C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build
>
>   Please see CMake's output for more information.
>
>
>
>   ----------------------------------------
>
>   Running setup.py clean for itk
>
>   Complete output from command D:\Softwares\python\python.exe -u -c
> "import setuptools,
> tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize,
> 'open', open)(__file__);code=f.read().replace('\r\n',
> '\n');f.close();exec(compile(code, __file__, 'exec'))" clean --all:
>
>   running clean
>
>   '_skbuild\win32-3.7\setuptools\lib' does not exist -- can't clean it
>
>   '_skbuild\win32-3.7\setuptools\bdist.win32' does not exist -- can't
> clean it
>
>   '_skbuild\win32-3.7\setuptools\scripts-3.7' does not exist -- can't
> clean it
>
>   removing '_skbuild\win32-3.7\setuptools'
>
>   removing '_skbuild\win32-3.7\cmake-install'
>
>   removing '_skbuild\win32-3.7\cmake-build'
>
>   error: [WinError 5] Access is denied:
> '_skbuild\\win32-3.7\\cmake-build\\ITKs\\.git\\objects\\pack\\pack-debda3808782fb53135b9fc9cb82b15868dc57b0.idx'
>
>
>
>   ----------------------------------------
>
> Failed to build itk
>
> Installing collected packages: itk
>
>   Running setup.py install for itk: started
>
>     Running setup.py install for itk: still running...
>
>     Running setup.py install for itk: finished with status 'error'
>
>     Complete output from command D:\Softwares\python\python.exe -u -c
> "import setuptools,
> tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize,
> 'open', open)(__file__);code=f.read().replace('\r\n',
> '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record
> C:\Users\kouka\AppData\Local\Temp\pip-record-ri4o36nk\install-record.txt
> --single-version-externally-managed --compile:
>
>
>
>
>
>
>     --------------------------------------------------------------------------------
>
>     -- Trying "Ninja" generator
>
>     --------------------------------
>
>     ---------------------------
>
>     ----------------------
>
>     -----------------
>
>     ------------
>
>     -------
>
>    --
>
>     Not searching for unused variables given on the command line.
>
>     -- The C compiler identification is MSVC 19.16.27027.1
>
>     -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>     -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>     -- Detecting C compiler ABI info
>
>     -- Detecting C compiler ABI info - done
>
>     -- Detecting C compile features
>
>     -- Detecting C compile features - done
>
>     -- The CXX compiler identification is MSVC 19.16.27027.1
>
>     -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>     -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>     -- Detecting CXX compiler ABI info
>
>     -- Detecting CXX compiler ABI info - done
>
>     -- Detecting CXX compile features
>
>     -- Detecting CXX compile features - done
>
>     -- Configuring done
>
>     -- Generating done
>
>     -- Build files have been written to:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_cmake_test_compile/build
>
>     --
>
>     -------
>
>     ------------
>
>     -----------------
>
>     ----------------------
>
>     ---------------------------
>
>     --------------------------------
>
>     -- Trying "Ninja" generator - success
>
>
> --------------------------------------------------------------------------------
>
>
>
>     -- SuperBuild - ITKPythonPackage_WHEEL_NAME:itk
>
>     -- SuperBuild -
>
>     -- SuperBuild - ITK-source-download
>
>     -- SuperBuild -   ITK_SOURCE_DIR:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs
>
>     -- SuperBuild - ITK-source-download[OK]
>
>     -- SuperBuild -
>
>     -- SuperBuild - Searching for python
>
>     -- SuperBuild -   PYTHON_INCLUDE_DIR: D:/Softwares/python/Include
>
>     -- SuperBuild -   PYTHON_LIBRARY: D:/Softwares/python/libs/python37.lib
>
>     -- SuperBuild -   PYTHON_EXECUTABLE: D:/Softwares/python/python.exe
>
>     -- SuperBuild - Searching for python[OK]
>
>     -- SuperBuild -   DOXYGEN_EXECUTABLE:
>
>     -- ITK CMake Cache Args -
>
>     -- SuperBuild -
>
>     -- SuperBuild - ITK => Requires ITK-source-download
>
>     -- SuperBuild -   ITK_BINARY_DIR:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb
>
>     -- SuperBuild - ITK[OK]
>
>     -- SuperBuild -
>
>     -- SuperBuild - ITKPythonPackage => Requires ITK
>
>     -- SuperBuild - ITKPythonPackage[OK]
>
>     -- Configuring done
>
>     -- Generating done
>
>     -- Build files have been written to:
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build
>
>     [1/25] Creating directories for 'ITK-source-download'
>
>     [1/25] Performing download step (git clone) for 'ITK-source-download'
>
>     Cloning into 'ITKs'...
>
>     Checking out files:  10% (1615/15746)
>
>     Checking out files:  11% (1733/15746)
>
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>
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>
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>
>     Checking out files: 100% (15746/15746)
>
>     Checking out files: 100% (15746/15746), done.
>
>     Note: checking out '3a11b90d06513'.
>
>
>
>     You are in 'detached HEAD' state. You can look around, make
> experimental
>
>     changes and commit them, and you can discard any commits you make in
> this
>
>     state without impacting any branches by performing another checkout.
>
>
>
>     If you want to create a new branch to retain commits you create, you
> may
>
>     do so (now or later) by using -b with the checkout command again.
> Example:
>
>
>
>       git checkout -b <new-branch-name>
>
>
>
>     HEAD is now at 3a11b90d06 COMP: Avoid duplicate wrapping of
> VectorContainer with unsigned short
>
>     [3/25] No patch step for 'ITK-source-download'
>
>     [4/25] Performing update step for 'ITK-source-download'
>
>     [5/25] No configure step for 'ITK-source-download'
>
>     [6/25] No build step for 'ITK-source-download'
>
>     [7/25] No install step for 'ITK-source-download'
>
>     [8/25] Completed 'ITK-source-download'
>
>     [9/25] Creating directories for 'ITK'
>
>     [9/25] No download step for 'ITK'
>
>     [10/25] No update step for 'ITK'
>
>     [11/25] No patch step for 'ITK'
>
>     [12/25] Performing configure step for 'ITK'
>
>     -- The CXX compiler identification is MSVC 19.16.27027.1
>
>     -- The C compiler identification is MSVC 19.16.27027.1
>
>     -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>     -- Check for working CXX compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>     -- Detecting CXX compiler ABI info
>
>     -- Detecting CXX compiler ABI info - done
>
>     -- Detecting CXX compile features
>
>     -- Detecting CXX compile features - done
>
>     -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
>
>     -- Check for working C compiler:
> D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe
> -- works
>
>     -- Detecting C compiler ABI info
>
>     -- Detecting C compiler ABI info - done
>
>     -- Detecting C compile features
>
>     -- Detecting C compile features - done
>
>     CMake Error at CMakeLists.txt:109 (message):
>
>       ITK source code directory path length is too long (94 > 50).Please
> move the
>
>       ITK source code directory to a directory with a shorter path.
>
>
>
>
>
>     -- Configuring incomplete, errors occurred!
>
>     See also
> "C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb/CMakeFiles/CMakeOutput.log".
>
>     FAILED: ITKp/src/ITK-stamp/ITK-configure
>
>     cmd.exe /C "cd /D
> C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build\ITKb
> && D:\Softwares\cmake\bin\cmake.exe -DBUILD_TESTING:BOOL=OFF
> -DCMAKE_INSTALL_PREFIX:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install
> -DPY_SITE_PACKAGES_PATH:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install
> -DWRAP_ITK_INSTALL_COMPONENT_IDENTIFIER:STRING=PythonWheel
> -DWRAP_ITK_INSTALL_COMPONENT_PER_MODULE:BOOL=OFF
> -DITK_LEGACY_SILENT:BOOL=ON -DITK_WRAP_PYTHON:BOOL=ON
> -DITK_WRAP_PYTHON_LEGACY:BOOL=OFF -DITK_WRAP_unsigned_short:BOOL=ON
> -DITK_WRAP_DOC:BOOL=ON -DDOXYGEN_EXECUTABLE:FILEPATH=
> -DPYTHON_INCLUDE_DIR:PATH=D:/Softwares/python/Include
> -DPYTHON_LIBRARY:FILEPATH=D:/Softwares/python/libs/python37.lib
> -DPYTHON_EXECUTABLE:FILEPATH=D:/Softwares/python/python.exe
> -DCMAKE_BUILD_TYPE:STRING=Release
> -DCMAKE_MAKE_PROGRAM:FILEPATH=D:/Softwares/visualstudio/Common7/IDE/CommonExtensions/Microsoft/CMake/Ninja/ninja.exe
> -GNinja
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs
> && D:\Softwares\cmake\bin\cmake.exe -E touch
> C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKp/src/ITK-stamp/ITK-configure"
>
>     ninja: build stopped: subcommand failed.
>
>     Traceback (most recent call last):
>
>       File
> "D:\Softwares\python\lib\site-packages\skbuild\setuptools_wrap.py", line
> 578, in setup
>
>         cmkr.make(make_args, env=env)
>
>       File "D:\Softwares\python\lib\site-packages\skbuild\cmaker.py", line
> 482, in make
>
>         os.path.abspath(CMAKE_BUILD_DIR())))
>
>
>
>     An error occurred while building with CMake.
>
>       Command:
>
>         "cmake" "--build" "." "--target" "install" "--config" "Release"
> "--"
>
>       Source directory:
>
>         C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk
>
>       Working directory:
>
>
> C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build
>
>     Please see CMake's output for more information.
>
>
>
>     ----------------------------------------
>
>   Failed building wheel for itk
>
>   Failed cleaning build dir for itk
>
> Command "D:\Softwares\python\python.exe -u -c "import setuptools,
> tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize,
> 'open', open)(__file__);code=f.read().replace('\r\n',
> '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record
> C:\Users\kouka\AppData\Local\Temp\pip-record-ri4o36nk\install-record.txt
> --single-version-externally-managed --compile" failed with error code 1 in
> C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\
>
>
>
>
> ------------------------------
>
> [image: Avast logo] <https://www.avast.com/antivirus>
>
> L'absence de virus dans ce courrier ?lectronique a ?t? v?rifi?e par le
> logiciel antivirus Avast.
> www.avast.com <https://www.avast.com/antivirus>
>
>
>
> _______________________________________________
> Rtk-users mailing list
> Rtk-users at public.kitware.com
> https://public.kitware.com/mailman/listinfo/rtk-users
>
>
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From Yannick.Grondin at surgiqual-institute.com  Tue Apr  2 03:36:51 2019
From: Yannick.Grondin at surgiqual-institute.com (Yannick Grondin)
Date: Tue, 2 Apr 2019 09:36:51 +0200
Subject: [Rtk-users] RTK for Python : installation failed
In-Reply-To: <CAF0oig21GjjYRyyS_RNGPC+Wm-xnzuhRZ5cqD4J4kmZbJ+n++g@mail.gmail.com>
References: <007a01d4e899$75ac3f50$6104bdf0$@surgiqual-institute.com>
 <CAF0oig21GjjYRyyS_RNGPC+Wm-xnzuhRZ5cqD4J4kmZbJ+n++g@mail.gmail.com>
Message-ID: <000f01d4e926$d80089d0$88019d70$@surgiqual-institute.com>

Hi Simon,

 

No, it is a 64-bit machine (with Windows 10).

Thanks anyway, I will ask to ITK.

Regards,

Yannick 

 

 

De : Simon Rit [mailto:simon.rit at creatis.insa-lyon.fr] 
Envoy? : mardi 2 avril 2019 09:07
? : Yannick Grondin
Cc : rtk-users
Objet : Re: [Rtk-users] RTK for Python : installation failed

 

Hi Yannick,

It's weird, it's trying to compile the package and I have no idea why. Are you on a 32-bit machine? It may be the cause, there is no pre-compiled version for (old) 32-bit Windows.

Since it's an ITK problem, I think the best is to ask the specialists on http://discourse.itk.org/.

Simon

 

On Tue, Apr 2, 2019 at 12:02 AM Yannick Grondin <Yannick.Grondin at surgiqual-institute.com> wrote:

Hi RTK users,

 

We have an installation which failed, although we followed the following commands for Python :

 

python -m pip install --upgrade pip
python -m pip install --upgrade --pre itk
python -m pip install itk-rtk

 

it failed after : python -m pip install --upgrade --pre itk

 

the error message is at the end of this email.

Do you have any idea of what we are doing wrong?

 

Thanks,

 

Yannick

____________________________

 <http://www.surgiqual-institute.com/> SQI_Logo_Mail

Yannick Grondin, PhD

Radiation Physics R&D Engineer

 <http://www.surgiqual-institute.com/> http://www.surgiqual-institute.com/

+33 (0) 4 58 00 38 08

 

Collecting itk

  Using cached https://files.pythonhosted.org/packages/69/e3/4b25d14a0637696193a57ca5838c5e465b31024935eace2457188d8c9071/itk-5.0rc1.tar.gz

Building wheels for collected packages: itk

  Building wheel for itk (setup.py): started

  Building wheel for itk (setup.py): still running...

  Building wheel for itk (setup.py): finished with status 'error'

  Complete output from command D:\Softwares\python\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d C:\Users\kouka\AppData\Local\Temp\pip-wheel-g_09lifp --python-tag cp37:

  

  

  --------------------------------------------------------------------------------

  -- Trying "Ninja" generator

  --------------------------------

  ---------------------------

  ----------------------

  -----------------

  ------------

  -------

  --

  Not searching for unused variables given on the command line.

  -- The C compiler identification is MSVC 19.16.27027.1

  -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

  -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

  -- Detecting C compiler ABI info

  -- Detecting C compiler ABI info - done

  -- Detecting C compile features

  -- Detecting C compile features - done

  -- The CXX compiler identification is MSVC 19.16.27027.1

  -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

  -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

  -- Detecting CXX compiler ABI info

  -- Detecting CXX compiler ABI info - done

  -- Detecting CXX compile features

  -- Detecting CXX compile features - done

  -- Configuring done

  -- Generating done

  -- Build files have been written to: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_cmake_test_compile/build

  --

  -------

  ------------

  -----------------

  ----------------------

  ---------------------------

  --------------------------------

  -- Trying "Ninja" generator - success

  --------------------------------------------------------------------------------

  

  -- SuperBuild - ITKPythonPackage_WHEEL_NAME:itk

  -- SuperBuild -

  -- SuperBuild - ITK-source-download

  -- SuperBuild -   ITK_SOURCE_DIR: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs

  -- SuperBuild - ITK-source-download[OK]

  -- SuperBuild -

  -- SuperBuild - Searching for python

  -- SuperBuild -   PYTHON_INCLUDE_DIR: D:/Softwares/python/Include

  -- SuperBuild -   PYTHON_LIBRARY: D:/Softwares/python/libs/python37.lib

  -- SuperBuild -   PYTHON_EXECUTABLE: D:/Softwares/python/python.exe

  -- SuperBuild - Searching for python[OK]

  -- SuperBuild -   DOXYGEN_EXECUTABLE:

  -- ITK CMake Cache Args -

  -- SuperBuild -

  -- SuperBuild - ITK => Requires ITK-source-download

  -- SuperBuild -   ITK_BINARY_DIR: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb

  -- SuperBuild - ITK[OK]

  -- SuperBuild -

  -- SuperBuild - ITKPythonPackage => Requires ITK

  -- SuperBuild - ITKPythonPackage[OK]

  -- Configuring done

  -- Generating done

  -- Build files have been written to: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build

  [1/25] Creating directories for 'ITK-source-download'

  [1/25] Performing download step (git clone) for 'ITK-source-download'

  Cloning into 'ITKs'...

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  Checking out files: 100% (15746/15746), done.

  Note: checking out '3a11b90d06513'.

  

  You are in 'detached HEAD' state. You can look around, make experimental

  changes and commit them, and you can discard any commits you make in this

  state without impacting any branches by performing another checkout.

  

  If you want to create a new branch to retain commits you create, you may

  do so (now or later) by using -b with the checkout command again. Example:

  

    git checkout -b <new-branch-name>

  

  HEAD is now at 3a11b90d06 COMP: Avoid duplicate wrapping of VectorContainer with unsigned short

  [3/25] No patch step for 'ITK-source-download'

  [4/25] Performing update step for 'ITK-source-download'

  [5/25] No configure step for 'ITK-source-download'

  [6/25] No build step for 'ITK-source-download'

  [7/25] No install step for 'ITK-source-download'

  [8/25] Completed 'ITK-source-download'

  [9/25] Creating directories for 'ITK'

  [9/25] No download step for 'ITK'

  [10/25] No update step for 'ITK'

  [11/25] No patch step for 'ITK'

  [12/25] Performing configure step for 'ITK'

  -- The CXX compiler identification is MSVC 19.16.27027.1

  -- The C compiler identification is MSVC 19.16.27027.1

  -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

  -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

  -- Detecting CXX compiler ABI info

  -- Detecting CXX compiler ABI info - done

  -- Detecting CXX compile features

  -- Detecting CXX compile features - done

  -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

  -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

  -- Detecting C compiler ABI info

  -- Detecting C compiler ABI info - done

  -- Detecting C compile features

  -- Detecting C compile features - done

  CMake Error at CMakeLists.txt:109 (message):

    ITK source code directory path length is too long (94 > 50).Please move the

    ITK source code directory to a directory with a shorter path.

  

  

  -- Configuring incomplete, errors occurred!

  See also "C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb/CMakeFiles/CMakeOutput.log".

  FAILED: ITKp/src/ITK-stamp/ITK-configure

  cmd.exe /C "cd /D C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build\ITKb && D:\Softwares\cmake\bin\cmake.exe -DBUILD_TESTING:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install -DPY_SITE_PACKAGES_PATH:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install -DWRAP_ITK_INSTALL_COMPONENT_IDENTIFIER:STRING=PythonWheel -DWRAP_ITK_INSTALL_COMPONENT_PER_MODULE:BOOL=OFF -DITK_LEGACY_SILENT:BOOL=ON -DITK_WRAP_PYTHON:BOOL=ON -DITK_WRAP_PYTHON_LEGACY:BOOL=OFF -DITK_WRAP_unsigned_short:BOOL=ON -DITK_WRAP_DOC:BOOL=ON -DDOXYGEN_EXECUTABLE:FILEPATH= -DPYTHON_INCLUDE_DIR:PATH=D:/Softwares/python/Include -DPYTHON_LIBRARY:FILEPATH=D:/Softwares/python/libs/python37.lib -DPYTHON_EXECUTABLE:FILEPATH=D:/Softwares/python/python.exe -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_MAKE_PROGRAM:FILEPATH=D:/Softwares/visualstudio/Common7/IDE/CommonExtensions/Microsoft/CMake/Ninja/ninja.exe -GNinja C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs && D:\Softwares\cmake\bin\cmake.exe -E touch C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKp/src/ITK-stamp/ITK-configure"

  ninja: build stopped: subcommand failed.

  Traceback (most recent call last):

    File "D:\Softwares\python\lib\site-packages\skbuild\setuptools_wrap.py", line 578, in setup

      cmkr.make(make_args, env=env)

    File "D:\Softwares\python\lib\site-packages\skbuild\cmaker.py", line 482, in make

      os.path.abspath(CMAKE_BUILD_DIR())))

  

  An error occurred while building with CMake.

    Command:

      "cmake" "--build" "." "--target" "install" "--config" "Release" "--"

    Source directory:

      C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk

    Working directory:

      C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build

  Please see CMake's output for more information.

  

  ----------------------------------------

  Running setup.py clean for itk

  Complete output from command D:\Softwares\python\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" clean --all:

  running clean

  '_skbuild\win32-3.7\setuptools\lib' does not exist -- can't clean it

  '_skbuild\win32-3.7\setuptools\bdist.win32' does not exist -- can't clean it

  '_skbuild\win32-3.7\setuptools\scripts-3.7' does not exist -- can't clean it

  removing '_skbuild\win32-3.7\setuptools'

  removing '_skbuild\win32-3.7\cmake-install'

  removing '_skbuild\win32-3.7\cmake-build'

  error: [WinError 5] Access is denied: '_skbuild\\win32-3.7\\cmake-build\\ITKs\\.git\\objects\\pack\\pack-debda3808782fb53135b9fc9cb82b15868dc57b0.idx'

  

  ----------------------------------------

Failed to build itk

Installing collected packages: itk

  Running setup.py install for itk: started

    Running setup.py install for itk: still running...

    Running setup.py install for itk: finished with status 'error'

    Complete output from command D:\Softwares\python\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record C:\Users\kouka\AppData\Local\Temp\pip-record-ri4o36nk\install-record.txt --single-version-externally-managed --compile:

    

    

    --------------------------------------------------------------------------------

    -- Trying "Ninja" generator

    --------------------------------

    ---------------------------

    ----------------------

    -----------------

    ------------

    -------

   --

    Not searching for unused variables given on the command line.

    -- The C compiler identification is MSVC 19.16.27027.1

    -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

    -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

    -- Detecting C compiler ABI info

    -- Detecting C compiler ABI info - done

    -- Detecting C compile features

    -- Detecting C compile features - done

    -- The CXX compiler identification is MSVC 19.16.27027.1

    -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

    -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

    -- Detecting CXX compiler ABI info

    -- Detecting CXX compiler ABI info - done

    -- Detecting CXX compile features

    -- Detecting CXX compile features - done

    -- Configuring done

    -- Generating done

    -- Build files have been written to: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_cmake_test_compile/build

    --

    -------

    ------------

    -----------------

    ----------------------

    ---------------------------

    --------------------------------

    -- Trying "Ninja" generator - success

    --------------------------------------------------------------------------------

    

    -- SuperBuild - ITKPythonPackage_WHEEL_NAME:itk

    -- SuperBuild -

    -- SuperBuild - ITK-source-download

    -- SuperBuild -   ITK_SOURCE_DIR: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs

    -- SuperBuild - ITK-source-download[OK]

    -- SuperBuild -

    -- SuperBuild - Searching for python

    -- SuperBuild -   PYTHON_INCLUDE_DIR: D:/Softwares/python/Include

    -- SuperBuild -   PYTHON_LIBRARY: D:/Softwares/python/libs/python37.lib

    -- SuperBuild -   PYTHON_EXECUTABLE: D:/Softwares/python/python.exe

    -- SuperBuild - Searching for python[OK]

    -- SuperBuild -   DOXYGEN_EXECUTABLE:

    -- ITK CMake Cache Args -

    -- SuperBuild -

    -- SuperBuild - ITK => Requires ITK-source-download

    -- SuperBuild -   ITK_BINARY_DIR: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb

    -- SuperBuild - ITK[OK]

    -- SuperBuild -

    -- SuperBuild - ITKPythonPackage => Requires ITK

    -- SuperBuild - ITKPythonPackage[OK]

    -- Configuring done

    -- Generating done

    -- Build files have been written to: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build

    [1/25] Creating directories for 'ITK-source-download'

    [1/25] Performing download step (git clone) for 'ITK-source-download'

    Cloning into 'ITKs'...

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    Checking out files: 100% (15746/15746), done.

    Note: checking out '3a11b90d06513'.

    

    You are in 'detached HEAD' state. You can look around, make experimental

    changes and commit them, and you can discard any commits you make in this

    state without impacting any branches by performing another checkout.

    

    If you want to create a new branch to retain commits you create, you may

    do so (now or later) by using -b with the checkout command again. Example:

    

      git checkout -b <new-branch-name>

    

    HEAD is now at 3a11b90d06 COMP: Avoid duplicate wrapping of VectorContainer with unsigned short

    [3/25] No patch step for 'ITK-source-download'

    [4/25] Performing update step for 'ITK-source-download'

    [5/25] No configure step for 'ITK-source-download'

    [6/25] No build step for 'ITK-source-download'

    [7/25] No install step for 'ITK-source-download'

    [8/25] Completed 'ITK-source-download'

    [9/25] Creating directories for 'ITK'

    [9/25] No download step for 'ITK'

    [10/25] No update step for 'ITK'

    [11/25] No patch step for 'ITK'

    [12/25] Performing configure step for 'ITK'

    -- The CXX compiler identification is MSVC 19.16.27027.1

    -- The C compiler identification is MSVC 19.16.27027.1

    -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

    -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

    -- Detecting CXX compiler ABI info

    -- Detecting CXX compiler ABI info - done

    -- Detecting CXX compile features

    -- Detecting CXX compile features - done

    -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

    -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

    -- Detecting C compiler ABI info

    -- Detecting C compiler ABI info - done

    -- Detecting C compile features

    -- Detecting C compile features - done

    CMake Error at CMakeLists.txt:109 (message):

      ITK source code directory path length is too long (94 > 50).Please move the

      ITK source code directory to a directory with a shorter path.

    

    

    -- Configuring incomplete, errors occurred!

    See also "C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb/CMakeFiles/CMakeOutput.log".

    FAILED: ITKp/src/ITK-stamp/ITK-configure

    cmd.exe /C "cd /D C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build\ITKb && D:\Softwares\cmake\bin\cmake.exe -DBUILD_TESTING:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install -DPY_SITE_PACKAGES_PATH:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install -DWRAP_ITK_INSTALL_COMPONENT_IDENTIFIER:STRING=PythonWheel -DWRAP_ITK_INSTALL_COMPONENT_PER_MODULE:BOOL=OFF -DITK_LEGACY_SILENT:BOOL=ON -DITK_WRAP_PYTHON:BOOL=ON -DITK_WRAP_PYTHON_LEGACY:BOOL=OFF -DITK_WRAP_unsigned_short:BOOL=ON -DITK_WRAP_DOC:BOOL=ON -DDOXYGEN_EXECUTABLE:FILEPATH= -DPYTHON_INCLUDE_DIR:PATH=D:/Softwares/python/Include -DPYTHON_LIBRARY:FILEPATH=D:/Softwares/python/libs/python37.lib -DPYTHON_EXECUTABLE:FILEPATH=D:/Softwares/python/python.exe -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_MAKE_PROGRAM:FILEPATH=D:/Softwares/visualstudio/Common7/IDE/CommonExtensions/Microsoft/CMake/Ninja/ninja.exe -GNinja C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs && D:\Softwares\cmake\bin\cmake.exe -E touch C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKp/src/ITK-stamp/ITK-configure"

    ninja: build stopped: subcommand failed.

    Traceback (most recent call last):

      File "D:\Softwares\python\lib\site-packages\skbuild\setuptools_wrap.py", line 578, in setup

        cmkr.make(make_args, env=env)

      File "D:\Softwares\python\lib\site-packages\skbuild\cmaker.py", line 482, in make

        os.path.abspath(CMAKE_BUILD_DIR())))

    

    An error occurred while building with CMake.

      Command:

        "cmake" "--build" "." "--target" "install" "--config" "Release" "--"

      Source directory:

        C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk

      Working directory:

        C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build

    Please see CMake's output for more information.

    

    ----------------------------------------

  Failed building wheel for itk

  Failed cleaning build dir for itk

Command "D:\Softwares\python\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record C:\Users\kouka\AppData\Local\Temp\pip-record-ri4o36nk\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\

 

 

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From Yannick.Grondin at surgiqual-institute.com  Tue Apr  2 03:49:01 2019
From: Yannick.Grondin at surgiqual-institute.com (Yannick Grondin)
Date: Tue, 2 Apr 2019 09:49:01 +0200
Subject: [Rtk-users] RTK for Python : installation failed
In-Reply-To: <CAF0oig3CUyqwx2sGrr5YQYXxCukW_VaZi8SX+4zRfdJRy2Tafw@mail.gmail.com>
References: <007a01d4e899$75ac3f50$6104bdf0$@surgiqual-institute.com>
 <CAF0oig21GjjYRyyS_RNGPC+Wm-xnzuhRZ5cqD4J4kmZbJ+n++g@mail.gmail.com>
 <000f01d4e926$d80089d0$88019d70$@surgiqual-institute.com>
 <CAF0oig3CUyqwx2sGrr5YQYXxCukW_VaZi8SX+4zRfdJRy2Tafw@mail.gmail.com>
Message-ID: <002101d4e928$8bca1f70$a35e5e50$@surgiqual-institute.com>

 

Thanks,

You are right, it is not the good Python version !

Thanks Simon,

 

Yannick

 

De : Simon Rit [mailto:simon.rit at creatis.insa-lyon.fr] 
Envoy? : mardi 2 avril 2019 09:45
? : Yannick Grondin
Cc : rtk-users
Objet : Re: [Rtk-users] RTK for Python : installation failed

 

I'm surprised that it mentions win32. Is the used python 64 bit?

 

On Tue, Apr 2, 2019 at 9:41 AM Yannick Grondin <Yannick.Grondin at surgiqual-institute.com> wrote:

Hi Simon,

 

No, it is a 64-bit machine (with Windows 10).

Thanks anyway, I will ask to ITK.

Regards,

Yannick 

 

 

De : Simon Rit [mailto:simon.rit at creatis.insa-lyon.fr] 
Envoy? : mardi 2 avril 2019 09:07
? : Yannick Grondin
Cc : rtk-users
Objet : Re: [Rtk-users] RTK for Python : installation failed

 

Hi Yannick,

It's weird, it's trying to compile the package and I have no idea why. Are you on a 32-bit machine? It may be the cause, there is no pre-compiled version for (old) 32-bit Windows.

Since it's an ITK problem, I think the best is to ask the specialists on http://discourse.itk.org/.

Simon

 

On Tue, Apr 2, 2019 at 12:02 AM Yannick Grondin <Yannick.Grondin at surgiqual-institute.com> wrote:

Hi RTK users,

 

We have an installation which failed, although we followed the following commands for Python :

 

python -m pip install --upgrade pip
python -m pip install --upgrade --pre itk
python -m pip install itk-rtk

 

it failed after : python -m pip install --upgrade --pre itk

 

the error message is at the end of this email.

Do you have any idea of what we are doing wrong?

 

Thanks,

 

Yannick

____________________________

 <http://www.surgiqual-institute.com/> SQI_Logo_Mail

Yannick Grondin, PhD

Radiation Physics R&D Engineer

 <http://www.surgiqual-institute.com/> http://www.surgiqual-institute.com/

+33 (0) 4 58 00 38 08

 

Collecting itk

  Using cached https://files.pythonhosted.org/packages/69/e3/4b25d14a0637696193a57ca5838c5e465b31024935eace2457188d8c9071/itk-5.0rc1.tar.gz

Building wheels for collected packages: itk

  Building wheel for itk (setup.py): started

  Building wheel for itk (setup.py): still running...

  Building wheel for itk (setup.py): finished with status 'error'

  Complete output from command D:\Softwares\python\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d C:\Users\kouka\AppData\Local\Temp\pip-wheel-g_09lifp --python-tag cp37:

  

  

  --------------------------------------------------------------------------------

  -- Trying "Ninja" generator

  --------------------------------

  ---------------------------

  ----------------------

  -----------------

  ------------

  -------

  --

  Not searching for unused variables given on the command line.

  -- The C compiler identification is MSVC 19.16.27027.1

  -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

  -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

  -- Detecting C compiler ABI info

  -- Detecting C compiler ABI info - done

  -- Detecting C compile features

  -- Detecting C compile features - done

  -- The CXX compiler identification is MSVC 19.16.27027.1

  -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

  -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

  -- Detecting CXX compiler ABI info

  -- Detecting CXX compiler ABI info - done

  -- Detecting CXX compile features

  -- Detecting CXX compile features - done

  -- Configuring done

  -- Generating done

  -- Build files have been written to: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_cmake_test_compile/build

  --

  -------

  ------------

  -----------------

  ----------------------

  ---------------------------

  --------------------------------

  -- Trying "Ninja" generator - success

  --------------------------------------------------------------------------------

  

  -- SuperBuild - ITKPythonPackage_WHEEL_NAME:itk

  -- SuperBuild -

  -- SuperBuild - ITK-source-download

  -- SuperBuild -   ITK_SOURCE_DIR: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs

  -- SuperBuild - ITK-source-download[OK]

  -- SuperBuild -

  -- SuperBuild - Searching for python

  -- SuperBuild -   PYTHON_INCLUDE_DIR: D:/Softwares/python/Include

  -- SuperBuild -   PYTHON_LIBRARY: D:/Softwares/python/libs/python37.lib

  -- SuperBuild -   PYTHON_EXECUTABLE: D:/Softwares/python/python.exe

  -- SuperBuild - Searching for python[OK]

  -- SuperBuild -   DOXYGEN_EXECUTABLE:

  -- ITK CMake Cache Args -

  -- SuperBuild -

  -- SuperBuild - ITK => Requires ITK-source-download

  -- SuperBuild -   ITK_BINARY_DIR: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb

  -- SuperBuild - ITK[OK]

  -- SuperBuild -

  -- SuperBuild - ITKPythonPackage => Requires ITK

  -- SuperBuild - ITKPythonPackage[OK]

  -- Configuring done

  -- Generating done

  -- Build files have been written to: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build

  [1/25] Creating directories for 'ITK-source-download'

  [1/25] Performing download step (git clone) for 'ITK-source-download'

  Cloning into 'ITKs'...

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  Checking out files: 100% (15746/15746), done.

  Note: checking out '3a11b90d06513'.

  

  You are in 'detached HEAD' state. You can look around, make experimental

  changes and commit them, and you can discard any commits you make in this

  state without impacting any branches by performing another checkout.

  

  If you want to create a new branch to retain commits you create, you may

  do so (now or later) by using -b with the checkout command again. Example:

  

    git checkout -b <new-branch-name>

  

  HEAD is now at 3a11b90d06 COMP: Avoid duplicate wrapping of VectorContainer with unsigned short

  [3/25] No patch step for 'ITK-source-download'

  [4/25] Performing update step for 'ITK-source-download'

  [5/25] No configure step for 'ITK-source-download'

  [6/25] No build step for 'ITK-source-download'

  [7/25] No install step for 'ITK-source-download'

  [8/25] Completed 'ITK-source-download'

  [9/25] Creating directories for 'ITK'

  [9/25] No download step for 'ITK'

  [10/25] No update step for 'ITK'

  [11/25] No patch step for 'ITK'

  [12/25] Performing configure step for 'ITK'

  -- The CXX compiler identification is MSVC 19.16.27027.1

  -- The C compiler identification is MSVC 19.16.27027.1

  -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

  -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

  -- Detecting CXX compiler ABI info

  -- Detecting CXX compiler ABI info - done

  -- Detecting CXX compile features

  -- Detecting CXX compile features - done

  -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

  -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

  -- Detecting C compiler ABI info

  -- Detecting C compiler ABI info - done

  -- Detecting C compile features

  -- Detecting C compile features - done

  CMake Error at CMakeLists.txt:109 (message):

    ITK source code directory path length is too long (94 > 50).Please move the

    ITK source code directory to a directory with a shorter path.

  

  

  -- Configuring incomplete, errors occurred!

  See also "C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb/CMakeFiles/CMakeOutput.log".

  FAILED: ITKp/src/ITK-stamp/ITK-configure

  cmd.exe /C "cd /D C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build\ITKb && D:\Softwares\cmake\bin\cmake.exe -DBUILD_TESTING:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install -DPY_SITE_PACKAGES_PATH:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install -DWRAP_ITK_INSTALL_COMPONENT_IDENTIFIER:STRING=PythonWheel -DWRAP_ITK_INSTALL_COMPONENT_PER_MODULE:BOOL=OFF -DITK_LEGACY_SILENT:BOOL=ON -DITK_WRAP_PYTHON:BOOL=ON -DITK_WRAP_PYTHON_LEGACY:BOOL=OFF -DITK_WRAP_unsigned_short:BOOL=ON -DITK_WRAP_DOC:BOOL=ON -DDOXYGEN_EXECUTABLE:FILEPATH= -DPYTHON_INCLUDE_DIR:PATH=D:/Softwares/python/Include -DPYTHON_LIBRARY:FILEPATH=D:/Softwares/python/libs/python37.lib -DPYTHON_EXECUTABLE:FILEPATH=D:/Softwares/python/python.exe -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_MAKE_PROGRAM:FILEPATH=D:/Softwares/visualstudio/Common7/IDE/CommonExtensions/Microsoft/CMake/Ninja/ninja.exe -GNinja C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs && D:\Softwares\cmake\bin\cmake.exe -E touch C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKp/src/ITK-stamp/ITK-configure"

  ninja: build stopped: subcommand failed.

  Traceback (most recent call last):

    File "D:\Softwares\python\lib\site-packages\skbuild\setuptools_wrap.py", line 578, in setup

      cmkr.make(make_args, env=env)

    File "D:\Softwares\python\lib\site-packages\skbuild\cmaker.py", line 482, in make

      os.path.abspath(CMAKE_BUILD_DIR())))

  

  An error occurred while building with CMake.

    Command:

      "cmake" "--build" "." "--target" "install" "--config" "Release" "--"

    Source directory:

      C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk

    Working directory:

      C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build

  Please see CMake's output for more information.

  

  ----------------------------------------

  Running setup.py clean for itk

  Complete output from command D:\Softwares\python\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" clean --all:

  running clean

  '_skbuild\win32-3.7\setuptools\lib' does not exist -- can't clean it

  '_skbuild\win32-3.7\setuptools\bdist.win32' does not exist -- can't clean it

  '_skbuild\win32-3.7\setuptools\scripts-3.7' does not exist -- can't clean it

  removing '_skbuild\win32-3.7\setuptools'

  removing '_skbuild\win32-3.7\cmake-install'

  removing '_skbuild\win32-3.7\cmake-build'

  error: [WinError 5] Access is denied: '_skbuild\\win32-3.7\\cmake-build\\ITKs\\.git\\objects\\pack\\pack-debda3808782fb53135b9fc9cb82b15868dc57b0.idx'

  

  ----------------------------------------

Failed to build itk

Installing collected packages: itk

  Running setup.py install for itk: started

    Running setup.py install for itk: still running...

    Running setup.py install for itk: finished with status 'error'

    Complete output from command D:\Softwares\python\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record C:\Users\kouka\AppData\Local\Temp\pip-record-ri4o36nk\install-record.txt --single-version-externally-managed --compile:

    

    

    --------------------------------------------------------------------------------

    -- Trying "Ninja" generator

    --------------------------------

    ---------------------------

    ----------------------

    -----------------

    ------------

    -------

   --

    Not searching for unused variables given on the command line.

    -- The C compiler identification is MSVC 19.16.27027.1

    -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

    -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

    -- Detecting C compiler ABI info

    -- Detecting C compiler ABI info - done

    -- Detecting C compile features

    -- Detecting C compile features - done

    -- The CXX compiler identification is MSVC 19.16.27027.1

    -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

    -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

    -- Detecting CXX compiler ABI info

    -- Detecting CXX compiler ABI info - done

    -- Detecting CXX compile features

    -- Detecting CXX compile features - done

    -- Configuring done

    -- Generating done

    -- Build files have been written to: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_cmake_test_compile/build

    --

    -------

    ------------

    -----------------

    ----------------------

    ---------------------------

    --------------------------------

    -- Trying "Ninja" generator - success

    --------------------------------------------------------------------------------

    

    -- SuperBuild - ITKPythonPackage_WHEEL_NAME:itk

    -- SuperBuild -

    -- SuperBuild - ITK-source-download

    -- SuperBuild -   ITK_SOURCE_DIR: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs

    -- SuperBuild - ITK-source-download[OK]

    -- SuperBuild -

    -- SuperBuild - Searching for python

    -- SuperBuild -   PYTHON_INCLUDE_DIR: D:/Softwares/python/Include

    -- SuperBuild -   PYTHON_LIBRARY: D:/Softwares/python/libs/python37.lib

    -- SuperBuild -   PYTHON_EXECUTABLE: D:/Softwares/python/python.exe

    -- SuperBuild - Searching for python[OK]

    -- SuperBuild -   DOXYGEN_EXECUTABLE:

    -- ITK CMake Cache Args -

    -- SuperBuild -

    -- SuperBuild - ITK => Requires ITK-source-download

    -- SuperBuild -   ITK_BINARY_DIR: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb

    -- SuperBuild - ITK[OK]

    -- SuperBuild -

    -- SuperBuild - ITKPythonPackage => Requires ITK

    -- SuperBuild - ITKPythonPackage[OK]

    -- Configuring done

    -- Generating done

    -- Build files have been written to: C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build

    [1/25] Creating directories for 'ITK-source-download'

    [1/25] Performing download step (git clone) for 'ITK-source-download'

    Cloning into 'ITKs'...

    Checking out files:  10% (1615/15746)   

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    Checking out files: 100% (15746/15746), done.

    Note: checking out '3a11b90d06513'.

    

    You are in 'detached HEAD' state. You can look around, make experimental

    changes and commit them, and you can discard any commits you make in this

    state without impacting any branches by performing another checkout.

    

    If you want to create a new branch to retain commits you create, you may

    do so (now or later) by using -b with the checkout command again. Example:

    

      git checkout -b <new-branch-name>

    

    HEAD is now at 3a11b90d06 COMP: Avoid duplicate wrapping of VectorContainer with unsigned short

    [3/25] No patch step for 'ITK-source-download'

    [4/25] Performing update step for 'ITK-source-download'

    [5/25] No configure step for 'ITK-source-download'

    [6/25] No build step for 'ITK-source-download'

    [7/25] No install step for 'ITK-source-download'

    [8/25] Completed 'ITK-source-download'

    [9/25] Creating directories for 'ITK'

    [9/25] No download step for 'ITK'

    [10/25] No update step for 'ITK'

    [11/25] No patch step for 'ITK'

    [12/25] Performing configure step for 'ITK'

    -- The CXX compiler identification is MSVC 19.16.27027.1

    -- The C compiler identification is MSVC 19.16.27027.1

    -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

    -- Check for working CXX compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

    -- Detecting CXX compiler ABI info

    -- Detecting CXX compiler ABI info - done

    -- Detecting CXX compile features

    -- Detecting CXX compile features - done

    -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe

    -- Check for working C compiler: D:/Softwares/visualstudio/VC/Tools/MSVC/14.16.27023/bin/Hostx86/x86/cl.exe -- works

    -- Detecting C compiler ABI info

    -- Detecting C compiler ABI info - done

    -- Detecting C compile features

    -- Detecting C compile features - done

    CMake Error at CMakeLists.txt:109 (message):

      ITK source code directory path length is too long (94 > 50).Please move the

      ITK source code directory to a directory with a shorter path.

    

    

    -- Configuring incomplete, errors occurred!

    See also "C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKb/CMakeFiles/CMakeOutput.log".

    FAILED: ITKp/src/ITK-stamp/ITK-configure

    cmd.exe /C "cd /D C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build\ITKb && D:\Softwares\cmake\bin\cmake.exe -DBUILD_TESTING:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install -DPY_SITE_PACKAGES_PATH:PATH=C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-install -DWRAP_ITK_INSTALL_COMPONENT_IDENTIFIER:STRING=PythonWheel -DWRAP_ITK_INSTALL_COMPONENT_PER_MODULE:BOOL=OFF -DITK_LEGACY_SILENT:BOOL=ON -DITK_WRAP_PYTHON:BOOL=ON -DITK_WRAP_PYTHON_LEGACY:BOOL=OFF -DITK_WRAP_unsigned_short:BOOL=ON -DITK_WRAP_DOC:BOOL=ON -DDOXYGEN_EXECUTABLE:FILEPATH= -DPYTHON_INCLUDE_DIR:PATH=D:/Softwares/python/Include -DPYTHON_LIBRARY:FILEPATH=D:/Softwares/python/libs/python37.lib -DPYTHON_EXECUTABLE:FILEPATH=D:/Softwares/python/python.exe -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_MAKE_PROGRAM:FILEPATH=D:/Softwares/visualstudio/Common7/IDE/CommonExtensions/Microsoft/CMake/Ninja/ninja.exe -GNinja C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKs && D:\Softwares\cmake\bin\cmake.exe -E touch C:/Users/kouka/AppData/Local/Temp/pip-install-byycnry8/itk/_skbuild/win32-3.7/cmake-build/ITKp/src/ITK-stamp/ITK-configure"

    ninja: build stopped: subcommand failed.

    Traceback (most recent call last):

      File "D:\Softwares\python\lib\site-packages\skbuild\setuptools_wrap.py", line 578, in setup

        cmkr.make(make_args, env=env)

      File "D:\Softwares\python\lib\site-packages\skbuild\cmaker.py", line 482, in make

        os.path.abspath(CMAKE_BUILD_DIR())))

    

    An error occurred while building with CMake.

      Command:

        "cmake" "--build" "." "--target" "install" "--config" "Release" "--"

      Source directory:

        C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk

      Working directory:

        C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\_skbuild\win32-3.7\cmake-build

    Please see CMake's output for more information.

    

    ----------------------------------------

  Failed building wheel for itk

  Failed cleaning build dir for itk

Command "D:\Softwares\python\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\kouka\\AppData\\Local\\Temp\\pip-install-byycnry8\\itk\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record C:\Users\kouka\AppData\Local\Temp\pip-record-ri4o36nk\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in C:\Users\kouka\AppData\Local\Temp\pip-install-byycnry8\itk\

 

 

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_______________________________________________
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From e.a.gh72 at gmail.com  Mon Apr 15 02:04:06 2019
From: e.a.gh72 at gmail.com (Ali ghorbanian)
Date: Mon, 15 Apr 2019 10:34:06 +0430
Subject: [Rtk-users] First Reconstruction
Message-ID: <CAFaepgHj=2C7S=0A4MJajkWiY8AEqsNiQmsYEykHzQCdH1v2ww@mail.gmail.com>

Hi,
Please explain the example of the first reconstruction (RTK folder) in more
detail and more comprehensively.
thank you.
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From simon.rit at creatis.insa-lyon.fr  Mon Apr 15 02:14:08 2019
From: simon.rit at creatis.insa-lyon.fr (Simon Rit)
Date: Mon, 15 Apr 2019 08:14:08 +0200
Subject: [Rtk-users] First Reconstruction
In-Reply-To: <CAFaepgHj=2C7S=0A4MJajkWiY8AEqsNiQmsYEykHzQCdH1v2ww@mail.gmail.com>
References: <CAFaepgHj=2C7S=0A4MJajkWiY8AEqsNiQmsYEykHzQCdH1v2ww@mail.gmail.com>
Message-ID: <CAF0oig3vHe3RqpB_h3tp7cvP1FRwd65QL4fUs9dT-HVQa+iRxA@mail.gmail.com>

Hi,
Please look at the comments in the code and ask a specific question on what
is not clear to you.
Thank you,
Simon

On Mon, Apr 15, 2019 at 8:04 AM Ali ghorbanian <e.a.gh72 at gmail.com> wrote:

> Hi,
> Please explain the example of the first reconstruction (RTK folder) in
> more detail and more comprehensively.
> thank you.
> _______________________________________________
> Rtk-users mailing list
> Rtk-users at public.kitware.com
> https://public.kitware.com/mailman/listinfo/rtk-users
>
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From e.a.gh72 at gmail.com  Tue Apr 16 00:30:37 2019
From: e.a.gh72 at gmail.com (Ali ghorbanian)
Date: Tue, 16 Apr 2019 09:00:37 +0430
Subject: [Rtk-users] FDKConeBeamReconstructionFilter
Message-ID: <CAFaepgF+87z4EtnC3BDfMmvr1f8+Y_hhqsU7Z-HLyK2k1tBmzQ@mail.gmail.com>

I have some bmp photos that I want to give them to the
FDKConeBeamReconstructionFilter entry.
feldkamp-> setInput
Please guide me.
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From simon.rit at creatis.insa-lyon.fr  Tue Apr 16 01:24:53 2019
From: simon.rit at creatis.insa-lyon.fr (Simon Rit)
Date: Tue, 16 Apr 2019 07:24:53 +0200
Subject: [Rtk-users] FDKConeBeamReconstructionFilter
In-Reply-To: <CAFaepgF+87z4EtnC3BDfMmvr1f8+Y_hhqsU7Z-HLyK2k1tBmzQ@mail.gmail.com>
References: <CAFaepgF+87z4EtnC3BDfMmvr1f8+Y_hhqsU7Z-HLyK2k1tBmzQ@mail.gmail.com>
Message-ID: <CAF0oig1i1OZH2B7AOwq8+_dtjEMOyjbe4Q+6=yUwM14XbS0qxQ@mail.gmail.com>

I would suggest to use rtkfdk or too look at the code rtkfdk.cxx
<https://github.com/SimonRit/RTK/blob/master/applications/rtkfdk/rtkfdk.cxx>.
On the command line, you can pass a path and a regular expression
containing bmp (see an example with his files on the Elekta wiki example
<http://wiki.openrtk.org/index.php/RTK/Examples/ElektaReconstruction>). ITK
should be able to handle BMP images but I have never tried.

On Tue, Apr 16, 2019 at 6:30 AM Ali ghorbanian <e.a.gh72 at gmail.com> wrote:

> I have some bmp photos that I want to give them to the
> FDKConeBeamReconstructionFilter entry.
> feldkamp-> setInput
> Please guide me.
> _______________________________________________
> Rtk-users mailing list
> Rtk-users at public.kitware.com
> https://public.kitware.com/mailman/listinfo/rtk-users
>
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From e.a.gh72 at gmail.com  Tue Apr 16 06:51:28 2019
From: e.a.gh72 at gmail.com (Ali ghorbanian)
Date: Tue, 16 Apr 2019 15:21:28 +0430
Subject: [Rtk-users] Projections reader
Message-ID: <CAFaepgE_QCnp9uXDkQj2PBw9iduWJbU69z2Yb05q2-wKYpye8A@mail.gmail.com>

How can I manually type the address for reading the Projections in the
following code?


GGO(rtkprojections, args_info);

typedef float OutputPixelType;
const unsigned int Dimension = 3;
typedef itk::Image<OutputPixelType,Dimension > OutputImageType;

// Projections reader
typedef rtk::ProjectionsReader< OutputImageType > ReaderType;
ReaderType::Pointer reader = ReaderType::New();
rtk::SetProjectionsReaderFromGgo<ReaderType,
args_info_rtkprojections>(reader, args_info);
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From simon.rit at creatis.insa-lyon.fr  Tue Apr 16 09:42:51 2019
From: simon.rit at creatis.insa-lyon.fr (Simon Rit)
Date: Tue, 16 Apr 2019 15:42:51 +0200
Subject: [Rtk-users] Projections reader
In-Reply-To: <CAFaepgE_QCnp9uXDkQj2PBw9iduWJbU69z2Yb05q2-wKYpye8A@mail.gmail.com>
References: <CAFaepgE_QCnp9uXDkQj2PBw9iduWJbU69z2Yb05q2-wKYpye8A@mail.gmail.com>
Message-ID: <CAF0oig1cKXsDT3b4Q4mks+VmPDYY2yGx21fp=w1ZKV2aZjhJbw@mail.gmail.com>

Replace rtk::SetProjectionsReaderFromGgo by the code you would like to use,
based on its c++ code
<https://github.com/SimonRit/RTK/blob/master/include/rtkGgoFunctions.h#L179>
.

On Tue, Apr 16, 2019 at 12:51 PM Ali ghorbanian <e.a.gh72 at gmail.com> wrote:

> How can I manually type the address for reading the Projections in the
> following code?
>
>
> GGO(rtkprojections, args_info);
>
> typedef float OutputPixelType;
> const unsigned int Dimension = 3;
> typedef itk::Image<OutputPixelType,Dimension > OutputImageType;
>
> // Projections reader
> typedef rtk::ProjectionsReader< OutputImageType > ReaderType;
> ReaderType::Pointer reader = ReaderType::New();
> rtk::SetProjectionsReaderFromGgo<ReaderType,
> args_info_rtkprojections>(reader, args_info);
> _______________________________________________
> Rtk-users mailing list
> Rtk-users at public.kitware.com
> https://public.kitware.com/mailman/listinfo/rtk-users
>
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From simon.rit at creatis.insa-lyon.fr  Thu Apr 25 09:14:19 2019
From: simon.rit at creatis.insa-lyon.fr (Simon Rit)
Date: Thu, 25 Apr 2019 15:14:19 +0200
Subject: [Rtk-users] =?utf-8?q?Fwd=3A_Sujet_de_th=C3=A8se=2C_reconstructi?=
 =?utf-8?q?on_PET/CT?=
In-Reply-To: <bb373f5b-7ef8-7ad6-7ee7-ef153d8cbfaf@univ-brest.fr>
References: <bb373f5b-7ef8-7ad6-7ee7-ef153d8cbfaf@univ-brest.fr>
Message-ID: <CAF0oig0dKW=TDPDdV0nso+HDQH2BG3ZEf6i1jtXZc22f34rPsg@mail.gmail.com>

Dear all,
FYI, there is a PhD position in Brest on PET reconstruction.
Best regards,
Simon
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From e.a.gh72 at gmail.com  Mon Apr 29 04:06:57 2019
From: e.a.gh72 at gmail.com (Ali ghorbanian)
Date: Mon, 29 Apr 2019 12:36:57 +0430
Subject: [Rtk-users] RTK Books
Message-ID: <CAFaepgE8cFiTKGJaJvkduHAQSJiLX=nZjeRoXsp9z0Gg6feOgQ@mail.gmail.com>

Hi,
Have a book for more explanations in libraries and implemented functions in
the RTK?
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From simon.rit at creatis.insa-lyon.fr  Mon Apr 29 04:49:56 2019
From: simon.rit at creatis.insa-lyon.fr (Simon Rit)
Date: Mon, 29 Apr 2019 10:49:56 +0200
Subject: [Rtk-users] RTK Books
In-Reply-To: <CAFaepgE8cFiTKGJaJvkduHAQSJiLX=nZjeRoXsp9z0Gg6feOgQ@mail.gmail.com>
References: <CAFaepgE8cFiTKGJaJvkduHAQSJiLX=nZjeRoXsp9z0Gg6feOgQ@mail.gmail.com>
Message-ID: <CAF0oig2_3EVrc3yVFP=bYthM=bek0-tDdRrKTGN1uxhXhMC=LA@mail.gmail.com>

Hi,
No, all we have is the wiki <http://wiki.openrtk.org/> and the doxygen
<http://www.openrtk.org/Doxygen/index.html> documentation.
Simon

On Mon, Apr 29, 2019 at 10:07 AM Ali ghorbanian <e.a.gh72 at gmail.com> wrote:

> Hi,
> Have a book for more explanations in libraries and implemented functions
> in the RTK?
> _______________________________________________
> Rtk-users mailing list
> Rtk-users at public.kitware.com
> https://public.kitware.com/mailman/listinfo/rtk-users
>
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From GCSHARP at PARTNERS.ORG  Mon Apr 29 14:41:15 2019
From: GCSHARP at PARTNERS.ORG (Sharp, Gregory C.)
Date: Mon, 29 Apr 2019 18:41:15 +0000
Subject: [Rtk-users] Typo on web page
Message-ID: <BN7PR04MB4004D45FD8863C1F98E62819CF390@BN7PR04MB4004.namprd04.prod.outlook.com>

Just wanted to alert you that the download web page says "The current release is version 1.3.0 from September 2016."  This statement should be removed or updated.

https://www.openrtk.org/RTK/resources/software.html


From simon.rit at creatis.insa-lyon.fr  Mon Apr 29 15:45:43 2019
From: simon.rit at creatis.insa-lyon.fr (Simon Rit)
Date: Mon, 29 Apr 2019 21:45:43 +0200
Subject: [Rtk-users] Typo on web page
In-Reply-To: <BN7PR04MB4004D45FD8863C1F98E62819CF390@BN7PR04MB4004.namprd04.prod.outlook.com>
References: <BN7PR04MB4004D45FD8863C1F98E62819CF390@BN7PR04MB4004.namprd04.prod.outlook.com>
Message-ID: <CAF0oig3y9AtEaovj4gz8gfbBMn94pv=0wDSDvS_9kvPL0etOBw@mail.gmail.com>

Hi Greg,
Thanks, it's been corrected.
Simon

On Mon, Apr 29, 2019 at 8:41 PM Sharp, Gregory C. <GCSHARP at partners.org>
wrote:

> Just wanted to alert you that the download web page says "The current
> release is version 1.3.0 from September 2016."  This statement should be
> removed or updated.
>
> https://www.openrtk.org/RTK/resources/software.html
>
> _______________________________________________
> Rtk-users mailing list
> Rtk-users at public.kitware.com
> https://public.kitware.com/mailman/listinfo/rtk-users
>
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From fredrik.hellman at gmail.com  Tue Apr 30 08:58:37 2019
From: fredrik.hellman at gmail.com (Fredrik Hellman)
Date: Tue, 30 Apr 2019 14:58:37 +0200
Subject: [Rtk-users] Cuda and RTK
Message-ID: <CACMrisyjNgADDb+UEm5SbcTPG_ydNzKdULODrXpWwRVJbHh4aA@mail.gmail.com>

Hi all,

I have a question about the the code that deals with cuda within RTK.

RTK uses itk cuda image, the itk data manager, and itk context manager (but
not itk kernel manager so much?) to handle cuda data. Is this maintained as
part of RTK or is it maintained somewhere else and only used in RTK? Now
when RTK becomes closer to ITK, what will happen to that code?

Best regards,
Fredrik
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From simon.rit at creatis.insa-lyon.fr  Tue Apr 30 09:03:02 2019
From: simon.rit at creatis.insa-lyon.fr (Simon Rit)
Date: Tue, 30 Apr 2019 15:03:02 +0200
Subject: [Rtk-users] Cuda and RTK
In-Reply-To: <CACMrisyjNgADDb+UEm5SbcTPG_ydNzKdULODrXpWwRVJbHh4aA@mail.gmail.com>
References: <CACMrisyjNgADDb+UEm5SbcTPG_ydNzKdULODrXpWwRVJbHh4aA@mail.gmail.com>
Message-ID: <CAF0oig3nPi_EAdPYT3AQ6dcPEpAY6x8YrYnK8L-8iAD4a6gPyA@mail.gmail.com>

Hi,
Everything you're saying is correct. This development was co-funded by the
RTK consortium and Kitware and the goal was to transfer it to ITK. However,
this has never occurred and at this stage, it is only maintained in RTK.
Ideally, this could become an independent ITK module.
Is it something you'd like/need?
Cheers,
Simon

On Tue, Apr 30, 2019 at 2:58 PM Fredrik Hellman <fredrik.hellman at gmail.com>
wrote:

> Hi all,
>
> I have a question about the the code that deals with cuda within RTK.
>
> RTK uses itk cuda image, the itk data manager, and itk context manager
> (but not itk kernel manager so much?) to handle cuda data. Is this
> maintained as part of RTK or is it maintained somewhere else and only used
> in RTK? Now when RTK becomes closer to ITK, what will happen to that code?
>
> Best regards,
> Fredrik
> _______________________________________________
> Rtk-users mailing list
> Rtk-users at public.kitware.com
> https://public.kitware.com/mailman/listinfo/rtk-users
>
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