[Rtk-users] compilation issues in case of outside of ITK directory build

[Simon Rit]

Hi,
Are you sure it's shared with the same compilation mode (Debug or Release) ?
Simon

On Fri, Oct 26, 2018 at 5:18 AM Julia Semyakishkina <
prekrasnaya1985 at gmail.com> wrote:

> Ok, it works in case ITK Static -> RTK Static. When i try to build ITK
> Shared -> RTK Shared, i have got:
> [ 19%] Linking CXX executable ../../bin/rtkamsterdamshroud
> CMakeFiles/rtkamsterdamshroud.dir/rtkamsterdamshroud.cxx.o: In function
> `rtk::ThreeDCircularProjectionGeometryXMLFileReader::New()':
> rtkamsterdamshroud.cxx:(.text._ZN3rtk45ThreeDCircularProjectionGeometryXMLFileReader3NewEv[_ZN3rtk45ThreeDCircularProjectionGeometryXMLFileReader3NewEv]+0xe):
> undefined reference to `typeinfo for
> rtk::ThreeDCircularProjectionGeometryXMLFileReader'
> rtkamsterdamshroud.cxx:(.text._ZN3rtk45ThreeDCircularProjectionGeometryXMLFileReader3NewEv[_ZN3rtk45ThreeDCircularProjectionGeometryXMLFileReader3NewEv]+0x41):
> undefined reference to `typeinfo for
> rtk::ThreeDCircularProjectionGeometryXMLFileReader'
> rtkamsterdamshroud.cxx:(.text._ZN3rtk45ThreeDCircularProjectionGeometryXMLFileReader3NewEv[_ZN3rtk45ThreeDCircularProjectionGeometryXMLFileReader3NewEv]+0xc9):
> undefined reference to
> `rtk::ThreeDCircularProjectionGeometryXMLFileReader::ThreeDCircularProjectionGeometryXMLFileReader()'
> CMakeFiles/rtkamsterdamshroud.dir/rtkamsterdamshroud.cxx.o: In function
> `std::vector<std::__cxx11::basic_string<char, std::char_traits<char>,
> std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char,
> std::char_traits<char>, std::allocator<char> > > > const
> rtk::GetProjectionsFileNamesFromGgo<args_info_rtkamsterdamshroud>(args_info_rtkamsterdamshroud
> const&)':
> rtkamsterdamshroud.cxx:(.text._ZN3rtk30GetProjectionsFileNamesFromGgoI28args_info_rtkamsterdamshroudEEKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EERKT_[_ZN3rtk30GetProjectionsFileNamesFromGgoI28args_info_rtkamsterdamshroudEEKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EERKT_]+0x3c1):
> undefined reference to `rtk::RegisterIOFactories()'
> CMakeFiles/rtkamsterdamshroud.dir/rtkamsterdamshroud.cxx.o: In function
> `rtk::ProjectionsReader<itk::Image<double, 3u>
> >::GenerateOutputInformation()':
> rtkamsterdamshroud.cxx:(.text._ZN3rtk17ProjectionsReaderIN3itk5ImageIdLj3EEEE25GenerateOutputInformationEv[_ZN3rtk17ProjectionsReaderIN3itk5ImageIdLj3EEEE25GenerateOutputInformationEv]+0x8e1):
> undefined reference to `rtk::RegisterIOFactories()'
> collect2: error: ld returned 1 exit status
> applications/rtkamsterdamshroud/CMakeFiles/rtkamsterdamshroud.dir/build.make:141:
> recipe for target 'bin/rtkamsterdamshroud' failed
> make[2]: *** [bin/rtkamsterdamshroud] Error 1
> CMakeFiles/Makefile2:512: recipe for target
> 'applications/rtkamsterdamshroud/CMakeFiles/rtkamsterdamshroud.dir/all'
> failed
> make[1]: ***
> [applications/rtkamsterdamshroud/CMakeFiles/rtkamsterdamshroud.dir/all]
> Error 2
> Makefile:129: recipe for target 'all' failed
> make: *** [all] Error 2
>
> On Fri, Oct 26, 2018 at 2:59 AM Simon Rit <simon.rit at creatis.insa-lyon.fr>
> wrote:
>
>> Hi,
>> It seems that you are trying to compile against an installed ITK_DIR.
>> This is no longer possible, see this thread:
>> https://github.com/SimonRit/RTK/issues/207
>> Can you try to compile against your build directory (set ITK_DIR to the
>> build directory)?
>> Thanks,
>> Simon
>>
>> On Thu, Oct 25, 2018 at 5:16 PM Julia Semyakishkina <
>> prekrasnaya1985 at gmail.com> wrote:
>>
>>> Hello.
>>> I can't build RTK in Linux. I've done all default steps described in
>>> wiki, but on configure i've got:
>>> CMake Error at utilities/lp_solve/CMakeLists.txt:9 (include):
>>>    include could not find load file:
>>>
>>>      ITKModuleMacros
>>>
>>>
>>> Hm.. it tries include module that exists in src ITK dir, not install...
>>> I mean
>>> "ls /usr/local/lib/cmake/ITK-4.13 | grep ITKModuleMacros" prints nothing
>>> "ls /home/user/src/ITK/CMake | grep ITKModuleMacros" prints
>>> ITKModuleMacros.cmake
>>>
>>> OK, i have just tried to add CMAKE_MODULE_PATH=/home/user/src/ITK/CMake
>>> and got next error:
>>>
>>> CMake Error at CMakeLists.txt:250 (message):
>>>   Modules can only be built against an ITK build tree; they cannot be
>>> built
>>>   against an ITK install tree.
>>>
>>> Let's look at the code:
>>>
>>> if(NOT ITK_SOURCE_DIR)
>>>   if(NOT EXISTS ${ITK_CMAKE_DIR}/ITKModuleMacros.cmake)
>>>     message(FATAL_ERROR "Modules can only be built against an ITK build
>>> tree; they cannot be built against an ITK install tree.")
>>>   endif()
>>>   list(APPEND CMAKE_MODULE_PATH ${ITK_CMAKE_DIR})
>>>   include(ITKModuleExternal)
>>> else()
>>>   itk_module_impl()
>>> endif()
>>>
>>> Yea, ITK_SOURCE_DIR is not set in my case, but why there is must be
>>> ITKModuleMacros.cmake at my ITK_CMAKE_DIR dir that points to ITK
>>> installation dir ?
>>>
>>> If i set ITK_CMAKE_DIR to /home/user/src/ITK/CMake where ITKModuleMacros
>>> is, it resets back to ITK installation directory at
>>> # --------------------------------------------------------
>>> # Find ITK (required)
>>> if(NOT ITK_SOURCE_DIR)
>>>   find_package(ITK 4.12.0 REQUIRED)
>>> endif()
>>>
>>>
>>> So, the only way i see is to build inside ITK, but i am not familiar
>>> with this. Could anyone help me how to build RTK inside ITK.
>>> _______________________________________________
>>> Rtk-users mailing list
>>> Rtk-users at public.kitware.com
>>> https://public.kitware.com/mailman/listinfo/rtk-users
>>>
>> _______________________________________________
> Rtk-users mailing list
> Rtk-users at public.kitware.com
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>
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