[Paraview] Problem with paraview and Protocol Buffer version

[Daniel Vogler]

Hi Cory, dear Artem,

Thanks for the mails. Regarding the issue Cory sent.


When doing the following:

I moved libqgtk2.so (not libqgtk3.so in my case) from 
/opt/Qt/5.9.0/gcc_64/plugins/platformthemes

and commented _all_ lines in 
/opt/Qt/5.9/gcc_64/lib/cmake/Qt5Gui/Qt5Gui_QGtk3ThemePlugin.cmake

I then rebuild paraview (build succeeds) but when I try to execute

user:~/software/paraview_bin$ ./bin/paraview
libprotobuf FATAL 
/home/user/software/paraview/ThirdParty/protobuf/vtkprotobuf/src/google/protobuf/stubs/common.cc:62] 
This program requires version 2.6.0 of the Protocol Buffer runtime 
library, but the installed version is 2.3.0.  Please update your 
library.  If you compiled the program yourself, make sure that your 
headers are from the same version of Protocol Buffers as your link-time 
library.  (Version verification failed in 
"/build/mir-O8_xaj/mir-0.26.3+16.04.20170605/obj-x86_64-linux-gnu/src/protobuf/mir_protobuf.pb.cc".)
Aborted


I still have no success. I still have other version of Qt installed 
(also in opt) and did not uninstall "qt5-gtk-platformtheme" as suggested 
by Timo Oster in the thread you sent. Could any of this be the problem? 
I am hesitant to uninstall qt5-gtk-platformtheme as I'm not sure if 
that'll give me another conflict.

Did I forget anything?

Daniel



On 13.02.2018 14:33, Cory Quammen wrote:
> Unfortunately, this is a known issue on Ubuntu 16.04.
>
> https://gitlab.kitware.com/paraview/paraview/issues/17751
>
>
> On Tue, Feb 13, 2018 at 2:29 PM, Artem Bodrin <art.bodrin at gmail.com 
> <mailto:art.bodrin at gmail.com>> wrote:
>
>     Hello, Daniel.
>     I have encountered the same trouble as you, Linux Mint (based on
>     ubuntu 16.04). I did not seek for a solution yet (no need for
>     linux version right now), but the answer is in the error output.
>     If you inspect  the 3rd party protobuf bundled with ParaView VTK
>     submodule, then you can see that original version used by VTK is 2.3.0
>     So I think, that during compilation it uses the system headers
>     from ubuntu (which is 2.6.1), but links on internal VTK protobuf
>     library which is 2.3.0.
>     My guessing is - remove dev package of protobuf from system and
>     recompile again, it might help.
>
>
>     > 13 февр. 2018 г., в 22:03, Daniel Vogler <davogler at ethz.ch
>     <mailto:davogler at ethz.ch>> написал(а):
>     >
>     > Dear all,
>     >
>     > I am having trouble building Paraview 5.2.0 (This version or
>     older is required for a separate plug-in). Other installations of
>     paraview (not compiled from source) work fine.
>     >
>     > I run Ubuntu 16.04 LTS. I check out the paraview 5.2.0 release
>     and installed Qt5.6.3 (also tried 5.6 and 5.7 because I had
>     trouble with Qt during the paraview build earlier) in a separate
>     directory. I have my (empty) build directory paraview_bin and
>     paraview 5.2.0 source in /home/user/software/paraview_bin and
>     /home/user/software/paraview respectively.
>     >
>     > - export PATH=/opt/Qt/5.6.3/gcc_64/:$PATH
>     >
>     > - ccmake -D PARAVIEW_QT_VERSION:STRING=5 /path/to/paraview
>     >
>     > - BUILD_TESTING --> OFF
>     >
>     > - generation and make completes
>     >
>     > The build works fine, but when I try to execute I get a protobuf
>     error
>     >
>     >
>     > user:~/software/paraview_bin$ ./bin/paraview
>     > libprotobuf FATAL
>     /home/user/software/paraview/ThirdParty/protobuf/vtkprotobuf/src/google/protobuf/stubs/common.cc:62]
>     > This program requires version 2.6.0 of the Protocol Buffer
>     runtime library, but the installed version is 2.3.0.
>     > Please update your library.
>     > If you compiled the program yourself, make sure that your
>     headers are from the same version of Protocol Buffers as your
>     link-time library.
>     > (Version verification failed in
>     "/build/mir-O8_xaj/mir-0.26.3+16.04.20170605/obj-x86_64-linux-gnu/src/protobuf/mir_protobuf.pb.cc
>     <http://mir_protobuf.pb.cc>".)
>     > Aborted
>     >
>     > although my protoc version seems fine
>     >
>     > user:~/software/paraview_bin$ protoc --version
>     > libprotoc 2.6.1
>     >
>     > I have tried uninstalling and reinstalling protoc and
>     libprotobuf as well as reinstalling Qt afterwards, but can not
>     figure out this error.
>     >
>     > Any suggestions?
>     >
>     > Thanks a bunch,
>     >
>     > Dan
>     >
>
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> -- 
> Cory Quammen
> Staff R&D Engineer
> Kitware, Inc.

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