[Paraview] how to build the paraview superbuild with mesa on a cluster (where user is not a root user)

Thu Jul 6 14:51:08 EDT 2017

Set the BUILD_SHARED_LIBS option to OFF.

HTH,
Cory

On Sun, Jul 2, 2017 at 11:56 AM, Ezhilmathi Krishnasamy
<ezhkr601 at student.liu.se> wrote:
> Hi,
>
> I am still having some problem with enabling the
> build shared libs. I am trying to install it on a Cray machine.
> I have already locally installed cmake and anaconda on their latest version.
>
> I am attaching here the image.
> Could any one tell me how to fix this issue
>
> Kind regards,
> Mathi
>
> On 2 July 2017 at 14:54, Ezhilmathi Krishnasamy <ezhkr601 at student.liu.se>
> wrote:
>>
>> Hi,
>>
>> I have almost build it, but getting this error:
>>
>>  CMake Warning (dev) at
>> /pdc/vol/anaconda/4.3/py36/lib/cmake/Qt5Core/Qt5CoreConfig.cmake:115
>> (add_library):
>>    ADD_LIBRARY called with SHARED option but the target platform does not
>>    support dynamic linking.  Building a STATIC library instead.  This may
>> lead
>>    to problems.
>>  Call Stack (most recent call first):
>>    /pdc/vol/anaconda/4.3/py36/lib/cmake/Qt5/Qt5Config.cmake:26
>> (find_package)
>>    superbuild/projects/qt5.system.cmake:1 (find_package)
>>    superbuild/cmake/SuperbuildMacros.cmake:640 (include)
>>    superbuild/CMakeLists.txt:115 (superbuild_process_dependencies)
>>  This warning is for project developers.  Use -Wno-dev to suppress it.
>>
>>
>>
>> On 2 July 2017 at 14:17, Ezhilmathi Krishnasamy <ezhkr601 at student.liu.se>
>> wrote:
>>>
>>> Thanks!
>>>
>>> Now it shows this kind of error
>>>
>>> /cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild>
>>> git fetch origin
>>> /cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild>
>>> git checkout v5.4.0
>>> HEAD is now at 7c510fe... Update to 5.4.0
>>> /cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild>
>>> git submodule update
>>> /cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild>
>>> cd ..
>>> /cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD> cd ..
>>> /cfs/klemming/nobackup/k/kriezh> cd build/
>>> /cfs/klemming/nobackup/k/kriezh/build> ccmake
>>> ../PARAVIEW_SUPER_BUILD/paraview-superbuild/
>>>
>>>
>>>  CMake Error at superbuild/cmake/SuperbuildMacros.cmake:289 (message):
>>>    The build tree appears to be inside of the git repository located at
>>>    /cfs/klemming/nobackup/k/kriezh.  This interferes with the way the
>>>    superbuild applies patches to projects and is not supported.  Please
>>>    relocate the build tree to a directory which is not under a git
>>> repository.
>>>  Call Stack (most recent call first):
>>>    superbuild/projects/bzip2.cmake:7 (superbuild_apply_patch)
>>>    superbuild/cmake/SuperbuildMacros.cmake:477 (include)
>>>    superbuild/CMakeLists.txt:113 (_superbuild_discover_projects)
>>>
>>>
>>>
>>>
>>> On 2 July 2017 at 14:03, Patrick Bégou
>>> <Patrick.Begou at legi.grenoble-inp.fr> wrote:
>>>>
>>>> Like you, I got this error some months ago when trying to build paraview
>>>> superbuild:
>>>>
>>>> error: unknown option `is-ancestor'
>>>>
>>>> It was my git version wich was too old. May be try to compile a more up
>>>> to date version of git in your home and set the path to access it.
>>>>
>>>> I have installed git from
>>>> https://www.kernel.org/pub/software/scm/git/git-2.12.2.tar.xz
>>>>
>>>> Patrick
>>>>
>>>> Ezhilmathi Krishnasamy a écrit :
>>>>
>>>> Hi,
>>>>
>>>> I have followed these instructions. I am trying to install it where I am
>>>> not a root user.
>>>> Can someone help to fix this issue.
>>>>
>>>>  git clone --recursive
>>>> https://gitlab.kitware.com/paraview/paraview-superbuild.git
>>>>  cd paraview-superbuild
>>>>  git fetch origin # ensure you have the latest state from the main repo
>>>>  git checkout v5.2.0 # replace `v5.2.0` with tag name of your choice
>>>>  git submodule update
>>>>
>>>>  cd ..
>>>>  mkdir build
>>>>  cd build
>>>>  ccmake ../paraview-superbuild
>>>>
>>>> Kind regards,
>>>> Mathi
>>>>
>>>>
>>>> On 30 June 2017 at 18:54, Ezhilmathi Krishnasamy
>>>> <ezhkr601 at student.liu.se> wrote:
>>>>>
>>>>> Hi Thanks!
>>>>>
>>>>> When I try to install Paraview,  I am getting the following error.
>>>>> Could some one please tell me how to fix this issue.
>>>>> I am trying to install the Paraview on a super computer to use it
>>>>> for remote rendering without using the GUI,  like with mesa support.
>>>>>
>>>>> kriezh at beskow-login2:/cfs/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD> git
>>>>> clone --recursive
>>>>> https://gitlab.kitware.com/paraview/paraview-superbuild.git
>>>>> Cloning into 'paraview-superbuild'...
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> remote: Counting objects: 6723, done.
>>>>> remote: Compressing objects: 100% (2459/2459), done.
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> remote: Total 6723 (delta 4451), reused 6342 (delta 4201)
>>>>> Receiving objects: 100% (6723/6723), 2.05 MiB | 741 KiB/s, done.
>>>>> Resolving deltas: 100% (4451/4451), done.
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> Checking out files: 100% (196/196), done.
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> Submodule 'superbuild'
>>>>> (https://gitlab.kitware.com/paraview/common-superbuild.git) registered for
>>>>> path 'superbuild'
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> Cloning into 'superbuild'...
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> remote: Counting objects: 6752, done.
>>>>> remote: Compressing objects: 100% (2235/2235), done.
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> remote: Total 6752 (delta 4505), reused 6574 (delta 4395)
>>>>> Receiving objects: 100% (6752/6752), 1.59 MiB | 592 KiB/s, done.
>>>>> Resolving deltas: 100% (4505/4505), done.
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> Submodule path 'superbuild': checked out
>>>>> '8f357bb5bf35419c210b3f9e0adbc9df08f565f2'
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission denied
>>>>>
>>>>>
>>>>>
>>>>> kriezh at beskow-login2:/cfs/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild>
>>>>> cmake .
>>>>> -- The C compiler identification is Intel 14.0.4.20140805
>>>>> -- The CXX compiler identification is Intel 14.0.4.20140805
>>>>> -- Cray Programming Environment 2.2.1 C
>>>>> -- Check for working C compiler: /opt/cray/craype/2.2.1/bin/cc
>>>>> -- Check for working C compiler: /opt/cray/craype/2.2.1/bin/cc -- works
>>>>> -- Detecting C compiler ABI info
>>>>> -- Detecting C compiler ABI info - done
>>>>> -- Detecting C compile features
>>>>> -- Detecting C compile features - done
>>>>> -- Cray Programming Environment 2.2.1 CXX
>>>>> -- Check for working CXX compiler: /opt/cray/craype/2.2.1/bin/CC
>>>>> -- Check for working CXX compiler: /opt/cray/craype/2.2.1/bin/CC --
>>>>> works
>>>>> -- Detecting CXX compiler ABI info
>>>>> -- Detecting CXX compiler ABI info - done
>>>>> -- Detecting CXX compile features
>>>>> -- Detecting CXX compile features - done
>>>>> CMake Warning at superbuild/cmake/SuperbuildUtils.cmake:242 (message):
>>>>>   Failed to determine if the common superbuild is an old checkout.  The
>>>>>   common superbuild may be out of date, but cannot be verified.:
>>>>> warning:
>>>>>   unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>> Permission
>>>>>   denied
>>>>>
>>>>>   warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>>   Permission denied
>>>>>
>>>>>   warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>>   Permission denied
>>>>>
>>>>>   warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>>>>   Permission denied
>>>>>
>>>>>   error: unknown option `is-ancestor'
>>>>>
>>>>>   usage: git merge-base [-a|--all] <commit> <commit>...
>>>>>
>>>>>      or: git merge-base [-a|--all] --octopus <commit>...
>>>>>      or: git merge-base --independent <commit>...
>>>>>
>>>>>
>>>>>
>>>>>       -a, --all             output all common ancestors
>>>>>       --octopus             find ancestors for a single n-way merge
>>>>>       --independent         list revs not reachable from others
>>>>> Call Stack (most recent call first):
>>>>>   superbuild/CMakeLists.txt:28 (_superbuild_check_up_to_date)
>>>>>
>>>>>
>>>>> -- Check size of void*
>>>>> -- Check size of void* - done
>>>>> -- Found Git: /usr/bin/git (found version "1.7.12.4")
>>>>> -- Determined source version for paraview: 5.4.0
>>>>> CMake Error at superbuild/cmake/SuperbuildMacros.cmake:289 (message):
>>>>>   The build tree appears to be inside of the git repository located at
>>>>>
>>>>> /cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild.
>>>>>   This interferes with the way the superbuild applies patches to
>>>>> projects and
>>>>>   is not supported.  Please relocate the build tree to a directory
>>>>> which is
>>>>>   not under a git repository.
>>>>> Call Stack (most recent call first):
>>>>>   superbuild/projects/bzip2.cmake:7 (superbuild_apply_patch)
>>>>>   superbuild/cmake/SuperbuildMacros.cmake:477 (include)
>>>>>   superbuild/CMakeLists.txt:113 (_superbuild_discover_projects)
>>>>>
>>>>>
>>>>> -- Configuring incomplete, errors occurred!
>>>>> See also
>>>>> "/cfs/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild/CMakeFiles/CMakeOutput.log".
>>>>>
>>>>>
>>>>> Kind regards,
>>>>> Mathi
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> On 30 June 2017 at 04:13, Cory Quammen <cory.quammen at kitware.com>
>>>>> wrote:
>>>>>>
>>>>>> On Wed, Jun 28, 2017 at 1:14 PM, Ezhilmathi Krishnasamy
>>>>>> <ezhkr601 at student.liu.se> wrote:
>>>>>> > Hi,
>>>>>> >
>>>>>> > Can anyone please give me some instructions how to Paraview
>>>>>> > Superbuid
>>>>>> > to install and use them with out using the GUI (using the python
>>>>>> > script to
>>>>>> > render the images on the cluster or super computer).
>>>>>> >
>>>>>> > I see there are some instructions in here:
>>>>>> > https://gitlab.kitware.com/paraview/paraview-superbuild/
>>>>>> >
>>>>>> > But I could not find any build instructions.
>>>>>>
>>>>>> Take a look again, that page includes the README.md file contents
>>>>>> which includes build instructions.
>>>>>>
>>>>>> To build without the GUI, you should just need to set the options
>>>>>> ENABLE_qt4 and ENABLE_qt5 to OFF. To build with Python, set
>>>>>> ENABLE_python to ON.
>>>>>>
>>>>>> Best regards,
>>>>>> Cory
>>>>>>
>>>>>> >
>>>>>> > Kind regards,
>>>>>> > Mathi
>>>>>> >
>>>>>> > _______________________________________________
>>>>>> > Powered by www.kitware.com
>>>>>> >
>>>>>> > Visit other Kitware open-source projects at
>>>>>> > http://www.kitware.com/opensource/opensource.html
>>>>>> >
>>>>>> > Please keep messages on-topic and check the ParaView Wiki at:
>>>>>> > http://paraview.org/Wiki/ParaView
>>>>>> >
>>>>>> > Search the list archives at: http://markmail.org/search/?q=ParaView
>>>>>> >
>>>>>> > Follow this link to subscribe/unsubscribe:
>>>>>> > http://public.kitware.com/mailman/listinfo/paraview
>>>>>> >
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Cory Quammen
>>>>>> Staff R&D Engineer
>>>>>> Kitware, Inc.
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Please keep messages on-topic and check the ParaView Wiki at:
>>>> http://paraview.org/Wiki/ParaView
>>>>
>>>> Search the list archives at: http://markmail.org/search/?q=ParaView
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://public.kitware.com/mailman/listinfo/paraview
>>>>
>>>>
>>>
>>
>

-- 
Cory Quammen
Staff R&D Engineer
Kitware, Inc.