[Paraview] how to build the paraview superbuild with mesa on a cluster (where user is not a root user)

Ezhilmathi Krishnasamy ezhkr601 at student.liu.se
Sun Jul 2 08:17:33 EDT 2017 

Thanks!

Now it shows this kind of error

/cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild>
git fetch origin
/cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild>
git checkout v5.4.0
HEAD is now at 7c510fe... Update to 5.4.0
/cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild>
git submodule update
/cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild>
cd ..
/cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD> cd ..
/cfs/klemming/nobackup/k/kriezh> cd build/
/cfs/klemming/nobackup/k/kriezh/build> ccmake
../PARAVIEW_SUPER_BUILD/paraview-superbuild/


 CMake Error at superbuild/cmake/SuperbuildMacros.cmake:289 (message):
   The build tree appears to be inside of the git repository located at
   /cfs/klemming/nobackup/k/kriezh.  This interferes with the way the
   superbuild applies patches to projects and is not supported.  Please
   relocate the build tree to a directory which is not under a git
repository.
 Call Stack (most recent call first):
   superbuild/projects/bzip2.cmake:7 (superbuild_apply_patch)
   superbuild/cmake/SuperbuildMacros.cmake:477 (include)
   superbuild/CMakeLists.txt:113 (_superbuild_discover_projects)




On 2 July 2017 at 14:03, Patrick Bégou <Patrick.Begou at legi.grenoble-inp.fr>
wrote:

> Like you, I got this error some months ago when trying to build paraview
> superbuild:
>
> *error: unknown option `is-ancestor'*
>
> It was my git version wich was too old. May be try to compile a more up to
> date version of git in your home and set the path to access it.
>
> I have installed git from https://www.kernel.org/pub/
> software/scm/git/git-2.12.2.tar.xz
>
> Patrick
>
> Ezhilmathi Krishnasamy a écrit :
>
> Hi,
>
> I have followed these instructions. I am trying to install it where I am
> not a root user.
> Can someone help to fix this issue.
>
>  git clone --recursive https://gitlab.kitware.com/
> paraview/paraview-superbuild.git
>  cd paraview-superbuild
>  git fetch origin # ensure you have the latest state from the main repo
>  git checkout v5.2.0 # replace `v5.2.0` with tag name of your choice
>  git submodule update
>
>  cd ..
>  mkdir build
>  cd build
>  ccmake ../paraview-superbuild
>
> Kind regards,
> Mathi
>
>
> On 30 June 2017 at 18:54, Ezhilmathi Krishnasamy <ezhkr601 at student.liu.se>
> wrote:
>
>> Hi Thanks!
>>
>> When I try to install Paraview,  I am getting the following error.
>> Could some one please tell me how to fix this issue.
>> I am trying to install the Paraview on a super computer to use it
>> for remote rendering without using the GUI,  like with mesa support.
>>
>> kriezh at beskow-login2:/cfs/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD> git
>> clone --recursive https://gitlab.kitware.com/par
>> aview/paraview-superbuild.git
>> Cloning into 'paraview-superbuild'...
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> remote: Counting objects: 6723, done.
>> remote: Compressing objects: 100% (2459/2459), done.
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> remote: Total 6723 (delta 4451), reused 6342 (delta 4201)
>> Receiving objects: 100% (6723/6723), 2.05 MiB | 741 KiB/s, done.
>> Resolving deltas: 100% (4451/4451), done.
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> Checking out files: 100% (196/196), done.
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> Submodule 'superbuild' (https://gitlab.kitware.com/pa
>> raview/common-superbuild.git) registered for path 'superbuild'
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> Cloning into 'superbuild'...
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> remote: Counting objects: 6752, done.
>> remote: Compressing objects: 100% (2235/2235), done.
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> remote: Total 6752 (delta 4505), reused 6574 (delta 4395)
>> Receiving objects: 100% (6752/6752), 1.59 MiB | 592 KiB/s, done.
>> Resolving deltas: 100% (4505/4505), done.
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> Submodule path 'superbuild': checked out '8f357bb5bf35419c210b3f9e0adbc
>> 9df08f565f2'
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>> warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>> Permission denied
>>
>>
>> kriezh at beskow-login2:/cfs/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superbuild>
>> cmake .
>> -- The C compiler identification is Intel 14.0.4.20140805
>> -- The CXX compiler identification is Intel 14.0.4.20140805
>> -- Cray Programming Environment 2.2.1 C
>> -- Check for working C compiler: /opt/cray/craype/2.2.1/bin/cc
>> -- Check for working C compiler: /opt/cray/craype/2.2.1/bin/cc -- works
>> -- Detecting C compiler ABI info
>> -- Detecting C compiler ABI info - done
>> -- Detecting C compile features
>> -- Detecting C compile features - done
>> -- Cray Programming Environment 2.2.1 CXX
>> -- Check for working CXX compiler: /opt/cray/craype/2.2.1/bin/CC
>> -- Check for working CXX compiler: /opt/cray/craype/2.2.1/bin/CC -- works
>> -- Detecting CXX compiler ABI info
>> -- Detecting CXX compiler ABI info - done
>> -- Detecting CXX compile features
>> -- Detecting CXX compile features - done
>> CMake Warning at superbuild/cmake/SuperbuildUtils.cmake:242 (message):
>>   Failed to determine if the common superbuild is an old checkout.  The
>>   common superbuild may be out of date, but cannot be verified.: warning:
>>   unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig': Permission
>>   denied
>>
>>   warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>   Permission denied
>>
>>   warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>   Permission denied
>>
>>   warning: unable to access '/afs/pdc.kth.se/home/k/kriezh/.gitconfig':
>>   Permission denied
>>
>>   error: unknown option `is-ancestor'
>>
>>   usage: git merge-base [-a|--all] <commit> <commit>...
>>
>>      or: git merge-base [-a|--all] --octopus <commit>...
>>      or: git merge-base --independent <commit>...
>>
>>
>>
>>       -a, --all             output all common ancestors
>>       --octopus             find ancestors for a single n-way merge
>>       --independent         list revs not reachable from others
>> Call Stack (most recent call first):
>>   superbuild/CMakeLists.txt:28 (_superbuild_check_up_to_date)
>>
>>
>> -- Check size of void*
>> -- Check size of void* - done
>> -- Found Git: /usr/bin/git (found version "1.7.12.4")
>> -- Determined source version for paraview: 5.4.0
>> CMake Error at superbuild/cmake/SuperbuildMacros.cmake:289 (message):
>>   The build tree appears to be inside of the git repository located at
>>   /cfs/klemming/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paravie
>> w-superbuild.
>>   This interferes with the way the superbuild applies patches to projects
>> and
>>   is not supported.  Please relocate the build tree to a directory which
>> is
>>   not under a git repository.
>> Call Stack (most recent call first):
>>   superbuild/projects/bzip2.cmake:7 (superbuild_apply_patch)
>>   superbuild/cmake/SuperbuildMacros.cmake:477 (include)
>>   superbuild/CMakeLists.txt:113 (_superbuild_discover_projects)
>>
>>
>> -- Configuring incomplete, errors occurred!
>> See also "/cfs/nobackup/k/kriezh/PARAVIEW_SUPER_BUILD/paraview-superb
>> uild/CMakeFiles/CMakeOutput.log".
>>
>>
>> Kind regards,
>> Mathi
>>
>>
>>
>>
>>
>> On 30 June 2017 at 04:13, Cory Quammen <cory.quammen at kitware.com> wrote:
>>
>>> On Wed, Jun 28, 2017 at 1:14 PM, Ezhilmathi Krishnasamy
>>> <ezhkr601 at student.liu.se> wrote:
>>> > Hi,
>>> >
>>> > Can anyone please give me some instructions how to Paraview Superbuid
>>> > to install and use them with out using the GUI (using the python
>>> script to
>>> > render the images on the cluster or super computer).
>>> >
>>> > I see there are some instructions in here:
>>> > https://gitlab.kitware.com/paraview/paraview-superbuild/
>>> >
>>> > But I could not find any build instructions.
>>>
>>> Take a look again, that page includes the README.md file contents
>>> which includes build instructions.
>>>
>>> To build without the GUI, you should just need to set the options
>>> ENABLE_qt4 and ENABLE_qt5 to OFF. To build with Python, set
>>> ENABLE_python to ON.
>>>
>>> Best regards,
>>> Cory
>>>
>>> >
>>> > Kind regards,
>>> > Mathi
>>> >
>>> > _______________________________________________
>>> > Powered by www.kitware.com
>>> >
>>> > Visit other Kitware open-source projects at
>>> > http://www.kitware.com/opensource/opensource.html
>>> >
>>> > Please keep messages on-topic and check the ParaView Wiki at:
>>> > http://paraview.org/Wiki/ParaView
>>> >
>>> > Search the list archives at: http://markmail.org/search/?q=ParaView
>>> >
>>> > Follow this link to subscribe/unsubscribe:
>>> > http://public.kitware.com/mailman/listinfo/paraview
>>> >
>>>
>>>
>>>
>>> --
>>> Cory Quammen
>>> Staff R&D Engineer
>>> Kitware, Inc.
>>>
>>
>>
>
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html
>
> Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView
>
> Search the list archives at: http://markmail.org/search/?q=ParaView
>
> Follow this link to subscribe/unsubscribe:http://public.kitware.com/mailman/listinfo/paraview
>
>
>
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