[Paraview] [EXTERNAL] Re: writing block data in parallel for vtk readers
Scott, W Alan
wascott at sandia.gov
Thu Sep 11 14:45:57 EDT 2014
What I do is as follows (probably overkill, but hey), in Python
path = os.environ.get('PATH')
os.environ['PATH']=pythonInstallDir+'/bin/:'+path
path = os.environ.get('LD_LIBRARY_PATH')
os.environ['LD_LIBRARY_PATH']=pythonInstallDir+'/lib/:'+path
path = os.environ.get('PYTHONPATH')
if path is None:
os.environ['PYTHONPATH']=pythonInstallDir+'/lib/python2.7:'
else:
os.environ['PYTHONPATH']=pythonInstallDir+'/lib/python2.7:'+path
if (buildPython == 'true') :
cMakeVars = cMakeVars +\
'-DPARAVIEW_ENABLE_PYTHON:BOOL=ON '
else :
cMakeVars = cMakeVars +\
'-DPARAVIEW_ENABLE_PYTHON:BOOL=OFF '
cMakeVars = cMakeVars +\
'-DPYTHON_EXECUTABLE:FILEPATH='+pythonInstallDir+'/bin/python '+\
'-DPYTHON_INCLUDE_PATH:PATH='+pythonInstallDir+'/include/python2.7/ '+\
'-DPYTHON_LIBRARY:FILEPATH='+pythonInstallDir+'/lib/libpython2.7.so '
Alan
-----Original Message-----
From: Cook, Rich [mailto:cook47 at llnl.gov]
Sent: Thursday, September 11, 2014 12:34 PM
To: Scott, W Alan
Cc: Utkarsh Ayachit; paraview at paraview.org
Subject: Re: [EXTERNAL] Re: [Paraview] writing block data in parallel for vtk readers
Alan, how do you hard code a newer version?
I prefer not to turn off the web stuff
On Sep 11, 2014, at 11:15 AM, Scott, W Alan <wascott at sandia.gov> wrote:
> What version of Python is in your path for the builds? Our cluster builds are so amazingly old that I build and hard code a newer version of Python.
>
> Alan
>
> -----Original Message-----
> From: ParaView [mailto:paraview-bounces at paraview.org] On Behalf Of
> Cook, Rich
> Sent: Thursday, September 11, 2014 12:09 PM
> To: Utkarsh Ayachit
> Cc: paraview at paraview.org
> Subject: [EXTERNAL] Re: [Paraview] writing block data in parallel for
> vtk readers
>
> What’s strange about that line is that in our python on our clusters, that line compiles just fine. So perhaps there is a bug in whatever is compiling testing.py?
>
> On Sep 11, 2014, at 11:04 AM, Cook, Rich <cook47 at llnl.gov> wrote:
>
>> Cannot build 4.2-RC1. I get this error. I’ve reported it before, but now it halts the build, so it needs to get fixed and I don’t know the answer:
>>
>> Compiling /usr/local/tools/paraview-opengl-4.2.0/src/ParaView-v4.2.0-Build/lib/site-packages/vtk/web/testing.py ...
>> SyntaxError: ('invalid syntax',
>> ('/usr/local/tools/paraview-opengl-4.2.0/src/ParaView-v4.2.0-Build/li
>> b /site-packages/vtk/web/testing.py', 76, 47, 'TestModuleBrowsers =
>> type("Enum", (), {k: i for i, k in
>> enumerate(test_module_browsers)})\n'))
>>
>>
>>
>> On Sep 10, 2014, at 10:04 PM, Utkarsh Ayachit <utkarsh.ayachit at kitware.com> wrote:
>>
>>> Rich,
>>>
>>> FYI, the VisIt bridge was updated to VisIt 2.7.0 soon after 4.1. You
>>> can try 4.2-RC1 to see if this was indeed a VisIt bridge being old
>>> issue.
>>>
>>> Utkarsh
>>>
>>> On Wed, Sep 10, 2014 at 8:19 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>>> The code in VisIt is up to date; it’s just Paraview that seems
>>>> behind the times. I am not able to completely convince myself of
>>>> why but I suspect that’s the problem. The actual error shows up as some sort of VTK error.
>>>> — Rich
>>>>
>>>>
>>>> ERROR: In
>>>> /usr/local/tools/paraview-opengl-4.1.0/src/ParaView-v4.1.0/VTK/Comm
>>>> o
>>>> n/ExecutionModel/vtkExecutive.cxx,
>>>> line 754
>>>> vtkPVCompositeDataPipeline (0x252ff00): Algorithm
>>>> vtkVisItMirandaReader(0x25342b0) returned failure for request:
>>>> vtkInformation (0x2521130)
>>>> Debug: Off
>>>> Modified Time: 119319
>>>> Reference Count: 1
>>>> Registered Events: (none)
>>>> Request: REQUEST_DATA_OBJECT
>>>> ALGORITHM_AFTER_FORWARD: 1
>>>> FORWARD_DIRECTION: 0
>>>>
>>>>
>>>>
>>>>
>>>> ERROR: In
>>>> /usr/local/tools/paraview-opengl-4.1.0/src/ParaView-v4.1.0/VTK/Comm
>>>> o
>>>> n/ExecutionModel/vtkExecutive.cxx,
>>>> line 754
>>>> vtkPVCompositeDataPipeline (0x252ff00): Algorithm
>>>> vtkVisItMirandaReader(0x25342b0) returned failure for request:
>>>> vtkInformation (0x2521130)
>>>> Debug: Off
>>>> Modified Time: 119319
>>>> Reference Count: 1
>>>> Registered Events: (none)
>>>> Request: REQUEST_DATA_OBJECT
>>>> ALGORITHM_AFTER_FORWARD: 1
>>>> FORWARD_DIRECTION: 0
>>>>
>>>>
>>>>
>>>>
>>>> On Sep 10, 2014, at 4:55 PM, Berk Geveci <berk.geveci at kitware.com> wrote:
>>>>
>>>> Hey Rich,
>>>>
>>>> Is this a matter of updating the VisIt bridge or the code in VisIt
>>>> is old too?
>>>>
>>>> What are the larger runs these folks do? And what is the timeframe?
>>>>
>>>> We are working on ADIOS readers and that may be another option.
>>>> This is where we currently plan on pushing for large scale IO needs.
>>>>
>>>> HDF5 is certainly another option. So is writing legacy VTK files
>>>> from each node. I'd guess Silo is another option too.
>>>>
>>>> It depends on the needs and scale at which they will be running.
>>>>
>>>> Best,
>>>> -berk
>>>>
>>>> On Mon, Sep 8, 2014 at 7:45 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>>>>
>>>>> Hi,
>>>>> I am wondering how to write out a set of VTK files for input into
>>>>> paraview.
>>>>> The code we are writing from is Miranda, an MPI code, and each
>>>>> processor writes out its subdomain individually. No ghost zones
>>>>> are written into the files. Perhaps they could be; I’m not sure about that part.
>>>>> Sometimes the data is curvilinear but usually rectilinear.
>>>>> Miranda is included in the VISIT_BRIDGE stuff but what’s in
>>>>> VISIT_BRIDGE for Miranda is old and the newer stuff doesn’t parse any more.
>>>>> Thanks!
>>>>>
>>>>> --
>>>>> ✐Richard Cook
>>>>> ✇ Lawrence Livermore National Laboratory
>>>>> Bldg-453 Rm-4024, Mail Stop L-557
>>>>> 7000 East Avenue, Livermore, CA, 94550, USA ☎ (office) (925)
>>>>> 423-9605 ☎ (fax) (925) 423-6961
>>>>> ---
>>>>> Information Management & Graphics Grp., Services & Development
>>>>> Div., Integrated Computing & Communications Dept.
>>>>> (opinions expressed herein are mine and not those of LLNL)
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Please keep messages on-topic and check the ParaView Wiki at:
>>>>> http://paraview.org/Wiki/ParaView
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>> http://public.kitware.com/mailman/listinfo/paraview
>>>>>
>>>>
>>>>
>>>> --
>>>> ✐Richard Cook
>>>> ✇ Lawrence Livermore National Laboratory
>>>> Bldg-453 Rm-4024, Mail Stop L-557
>>>> 7000 East Avenue, Livermore, CA, 94550, USA ☎ (office) (925)
>>>> 423-9605 ☎ (fax) (925) 423-6961
>>>> ---
>>>> Information Management & Graphics Grp., Services & Development
>>>> Div., Integrated Computing & Communications Dept.
>>>> (opinions expressed herein are mine and not those of LLNL)
>>>>
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Please keep messages on-topic and check the ParaView Wiki at:
>>>> http://paraview.org/Wiki/ParaView
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://public.kitware.com/mailman/listinfo/paraview
>>>>
>>
>> --
>> ✐Richard Cook
>> ✇ Lawrence Livermore National Laboratory
>> Bldg-453 Rm-4024, Mail Stop L-557
>> 7000 East Avenue, Livermore, CA, 94550, USA ☎ (office) (925)
>> 423-9605 ☎ (fax) (925) 423-6961
>> ---
>> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
>> (opinions expressed herein are mine and not those of LLNL)
>>
>>
>>
>
> --
> ✐Richard Cook
> ✇ Lawrence Livermore National Laboratory
> Bldg-453 Rm-4024, Mail Stop L-557
> 7000 East Avenue, Livermore, CA, 94550, USA ☎ (office) (925) 423-9605
> ☎ (fax) (925) 423-6961
> ---
> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
> (opinions expressed herein are mine and not those of LLNL)
>
>
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Please keep messages on-topic and check the ParaView Wiki at:
> http://paraview.org/Wiki/ParaView
>
> Follow this link to subscribe/unsubscribe:
> http://public.kitware.com/mailman/listinfo/paraview
--
✐Richard Cook
✇ Lawrence Livermore National Laboratory
Bldg-453 Rm-4024, Mail Stop L-557
7000 East Avenue, Livermore, CA, 94550, USA
☎ (office) (925) 423-9605
☎ (fax) (925) 423-6961
---
Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
(opinions expressed herein are mine and not those of LLNL)
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