[Paraview] [EXTERNAL] Re: writing block data in parallel for vtk readers

Thu Sep 11 14:15:28 EDT 2014

What version of Python is in your path for the builds?  Our cluster builds are so amazingly old that I build and hard code a newer version of Python.

Alan

-----Original Message-----
From: ParaView [mailto:paraview-bounces at paraview.org] On Behalf Of Cook, Rich
Sent: Thursday, September 11, 2014 12:09 PM
To: Utkarsh Ayachit
Cc: paraview at paraview.org
Subject: [EXTERNAL] Re: [Paraview] writing block data in parallel for vtk readers

What’s strange about that line is that in our python on our clusters, that line compiles just fine.  So perhaps there is a bug in whatever is compiling testing.py?  

On Sep 11, 2014, at 11:04 AM, Cook, Rich <cook47 at llnl.gov> wrote:

> Cannot build 4.2-RC1.  I get this error.  I’ve reported it before, but now it halts the build, so it needs to get fixed and I don’t know the answer: 
> 
> Compiling /usr/local/tools/paraview-opengl-4.2.0/src/ParaView-v4.2.0-Build/lib/site-packages/vtk/web/testing.py ...
> SyntaxError: ('invalid syntax', 
> ('/usr/local/tools/paraview-opengl-4.2.0/src/ParaView-v4.2.0-Build/lib
> /site-packages/vtk/web/testing.py', 76, 47, 'TestModuleBrowsers = 
> type("Enum", (), {k: i for i, k in 
> enumerate(test_module_browsers)})\n'))
> 
> 
> 
> On Sep 10, 2014, at 10:04 PM, Utkarsh Ayachit <utkarsh.ayachit at kitware.com> wrote:
> 
>> Rich,
>> 
>> FYI, the VisIt bridge was updated to VisIt 2.7.0 soon after 4.1. You 
>> can try 4.2-RC1 to see if this was indeed a VisIt bridge being old 
>> issue.
>> 
>> Utkarsh
>> 
>> On Wed, Sep 10, 2014 at 8:19 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>> The code in VisIt is up to date; it’s just Paraview that seems 
>>> behind the times.  I am not able to completely convince myself of 
>>> why but I suspect that’s the problem.  The actual error shows up as some sort of VTK error.
>>> — Rich
>>> 
>>> 
>>> ERROR: In
>>> /usr/local/tools/paraview-opengl-4.1.0/src/ParaView-v4.1.0/VTK/Commo
>>> n/ExecutionModel/vtkExecutive.cxx,
>>> line 754
>>> vtkPVCompositeDataPipeline (0x252ff00): Algorithm
>>> vtkVisItMirandaReader(0x25342b0) returned failure for request:
>>> vtkInformation (0x2521130)
>>> Debug: Off
>>> Modified Time: 119319
>>> Reference Count: 1
>>> Registered Events: (none)
>>> Request: REQUEST_DATA_OBJECT
>>> ALGORITHM_AFTER_FORWARD: 1
>>> FORWARD_DIRECTION: 0
>>> 
>>> 
>>> 
>>> 
>>> ERROR: In
>>> /usr/local/tools/paraview-opengl-4.1.0/src/ParaView-v4.1.0/VTK/Commo
>>> n/ExecutionModel/vtkExecutive.cxx,
>>> line 754
>>> vtkPVCompositeDataPipeline (0x252ff00): Algorithm
>>> vtkVisItMirandaReader(0x25342b0) returned failure for request:
>>> vtkInformation (0x2521130)
>>> Debug: Off
>>> Modified Time: 119319
>>> Reference Count: 1
>>> Registered Events: (none)
>>> Request: REQUEST_DATA_OBJECT
>>> ALGORITHM_AFTER_FORWARD: 1
>>> FORWARD_DIRECTION: 0
>>> 
>>> 
>>> 
>>> 
>>> On Sep 10, 2014, at 4:55 PM, Berk Geveci <berk.geveci at kitware.com> wrote:
>>> 
>>> Hey Rich,
>>> 
>>> Is this a matter of updating the VisIt bridge or the code in VisIt 
>>> is old too?
>>> 
>>> What are the larger runs these folks do? And what is the timeframe?
>>> 
>>> We are working on ADIOS readers and that may be another option. This 
>>> is where we currently plan on pushing for large scale IO needs.
>>> 
>>> HDF5 is certainly another option. So is writing legacy VTK files 
>>> from each node. I'd guess Silo is another option too.
>>> 
>>> It depends on the needs and scale at which they will be running.
>>> 
>>> Best,
>>> -berk
>>> 
>>> On Mon, Sep 8, 2014 at 7:45 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>>> 
>>>> Hi,
>>>> I am wondering how to write out a set of VTK files for input into 
>>>> paraview.
>>>> The code we are writing from is Miranda, an MPI code, and each 
>>>> processor writes out its subdomain individually.  No ghost zones 
>>>> are written into the files.  Perhaps they could be; I’m not sure about that part.
>>>> Sometimes the data is curvilinear but usually rectilinear.
>>>> Miranda is included in the VISIT_BRIDGE stuff but what’s in 
>>>> VISIT_BRIDGE for Miranda is old and the newer stuff doesn’t parse any more.
>>>> Thanks!
>>>> 
>>>> --
>>>> ✐Richard Cook
>>>> ✇ Lawrence Livermore National Laboratory
>>>> Bldg-453 Rm-4024, Mail Stop L-557
>>>> 7000 East Avenue,  Livermore, CA, 94550, USA ☎ (office) (925) 
>>>> 423-9605 ☎ (fax) (925) 423-6961
>>>> ---
>>>> Information Management & Graphics Grp., Services & Development 
>>>> Div., Integrated Computing & Communications Dept.
>>>> (opinions expressed herein are mine and not those of LLNL)
>>>> 
>>>> 
>>>> 
>>>> 
>>>> _______________________________________________
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>>> 
>>> 
>>> --
>>> ✐Richard Cook
>>> ✇ Lawrence Livermore National Laboratory
>>> Bldg-453 Rm-4024, Mail Stop L-557
>>> 7000 East Avenue,  Livermore, CA, 94550, USA ☎ (office) (925) 
>>> 423-9605 ☎ (fax) (925) 423-6961
>>> ---
>>> Information Management & Graphics Grp., Services & Development Div., 
>>> Integrated Computing & Communications Dept.
>>> (opinions expressed herein are mine and not those of LLNL)
>>> 
>>> 
>>> 
>>> 
>>> _______________________________________________
>>> Powered by www.kitware.com
>>> 
>>> Visit other Kitware open-source projects at 
>>> http://www.kitware.com/opensource/opensource.html
>>> 
>>> Please keep messages on-topic and check the ParaView Wiki at:
>>> http://paraview.org/Wiki/ParaView
>>> 
>>> Follow this link to subscribe/unsubscribe:
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> 
> -- 
> ✐Richard Cook   
> ✇ Lawrence Livermore National Laboratory
> Bldg-453 Rm-4024, Mail Stop L-557        
> 7000 East Avenue,  Livermore, CA, 94550, USA
> ☎ (office) (925) 423-9605    
> ☎ (fax) (925) 423-6961
> ---
> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
> (opinions expressed herein are mine and not those of LLNL)
> 
> 
> 

-- 
✐Richard Cook   
✇ Lawrence Livermore National Laboratory
Bldg-453 Rm-4024, Mail Stop L-557        
7000 East Avenue,  Livermore, CA, 94550, USA
☎ (office) (925) 423-9605    
☎ (fax) (925) 423-6961
---
Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
(opinions expressed herein are mine and not those of LLNL)

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