[Paraview] writing block data in parallel for vtk readers

Cook, Rich cook47 at llnl.gov
Thu Sep 11 14:04:24 EDT 2014


Cannot build 4.2-RC1.  I get this error.  I’ve reported it before, but now it halts the build, so it needs to get fixed and I don’t know the answer: 

Compiling /usr/local/tools/paraview-opengl-4.2.0/src/ParaView-v4.2.0-Build/lib/site-packages/vtk/web/testing.py ...
SyntaxError: ('invalid syntax', ('/usr/local/tools/paraview-opengl-4.2.0/src/ParaView-v4.2.0-Build/lib/site-packages/vtk/web/testing.py', 76, 47, 'TestModuleBrowsers = type("Enum", (), {k: i for i, k in enumerate(test_module_browsers)})\n'))



On Sep 10, 2014, at 10:04 PM, Utkarsh Ayachit <utkarsh.ayachit at kitware.com> wrote:

> Rich,
> 
> FYI, the VisIt bridge was updated to VisIt 2.7.0 soon after 4.1. You
> can try 4.2-RC1 to see if this was indeed a VisIt bridge being old
> issue.
> 
> Utkarsh
> 
> On Wed, Sep 10, 2014 at 8:19 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>> The code in VisIt is up to date; it’s just Paraview that seems behind the
>> times.  I am not able to completely convince myself of why but I suspect
>> that’s the problem.  The actual error shows up as some sort of VTK error.
>> — Rich
>> 
>> 
>> ERROR: In
>> /usr/local/tools/paraview-opengl-4.1.0/src/ParaView-v4.1.0/VTK/Common/ExecutionModel/vtkExecutive.cxx,
>> line 754
>> vtkPVCompositeDataPipeline (0x252ff00): Algorithm
>> vtkVisItMirandaReader(0x25342b0) returned failure for request:
>> vtkInformation (0x2521130)
>>  Debug: Off
>>  Modified Time: 119319
>>  Reference Count: 1
>>  Registered Events: (none)
>>  Request: REQUEST_DATA_OBJECT
>>  ALGORITHM_AFTER_FORWARD: 1
>>  FORWARD_DIRECTION: 0
>> 
>> 
>> 
>> 
>> ERROR: In
>> /usr/local/tools/paraview-opengl-4.1.0/src/ParaView-v4.1.0/VTK/Common/ExecutionModel/vtkExecutive.cxx,
>> line 754
>> vtkPVCompositeDataPipeline (0x252ff00): Algorithm
>> vtkVisItMirandaReader(0x25342b0) returned failure for request:
>> vtkInformation (0x2521130)
>>  Debug: Off
>>  Modified Time: 119319
>>  Reference Count: 1
>>  Registered Events: (none)
>>  Request: REQUEST_DATA_OBJECT
>>  ALGORITHM_AFTER_FORWARD: 1
>>  FORWARD_DIRECTION: 0
>> 
>> 
>> 
>> 
>> On Sep 10, 2014, at 4:55 PM, Berk Geveci <berk.geveci at kitware.com> wrote:
>> 
>> Hey Rich,
>> 
>> Is this a matter of updating the VisIt bridge or the code in VisIt is old
>> too?
>> 
>> What are the larger runs these folks do? And what is the timeframe?
>> 
>> We are working on ADIOS readers and that may be another option. This is
>> where we currently plan on pushing for large scale IO needs.
>> 
>> HDF5 is certainly another option. So is writing legacy VTK files from each
>> node. I'd guess Silo is another option too.
>> 
>> It depends on the needs and scale at which they will be running.
>> 
>> Best,
>> -berk
>> 
>> On Mon, Sep 8, 2014 at 7:45 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>> 
>>> Hi,
>>> I am wondering how to write out a set of VTK files for input into
>>> paraview.
>>> The code we are writing from is Miranda, an MPI code, and each processor
>>> writes out its subdomain individually.  No ghost zones are written into the
>>> files.  Perhaps they could be; I’m not sure about that part.
>>> Sometimes the data is curvilinear but usually rectilinear.
>>> Miranda is included in the VISIT_BRIDGE stuff but what’s in VISIT_BRIDGE
>>> for Miranda is old and the newer stuff doesn’t parse any more.
>>> Thanks!
>>> 
>>> --
>>> ✐Richard Cook
>>> ✇ Lawrence Livermore National Laboratory
>>> Bldg-453 Rm-4024, Mail Stop L-557
>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>> ☎ (office) (925) 423-9605
>>> ☎ (fax) (925) 423-6961
>>> ---
>>> Information Management & Graphics Grp., Services & Development Div.,
>>> Integrated Computing & Communications Dept.
>>> (opinions expressed herein are mine and not those of LLNL)
>>> 
>>> 
>>> 
>>> 
>>> _______________________________________________
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>> 
>> 
>> --
>> ✐Richard Cook
>> ✇ Lawrence Livermore National Laboratory
>> Bldg-453 Rm-4024, Mail Stop L-557
>> 7000 East Avenue,  Livermore, CA, 94550, USA
>> ☎ (office) (925) 423-9605
>> ☎ (fax) (925) 423-6961
>> ---
>> Information Management & Graphics Grp., Services & Development Div.,
>> Integrated Computing & Communications Dept.
>> (opinions expressed herein are mine and not those of LLNL)
>> 
>> 
>> 
>> 
>> _______________________________________________
>> Powered by www.kitware.com
>> 
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>> 
>> Please keep messages on-topic and check the ParaView Wiki at:
>> http://paraview.org/Wiki/ParaView
>> 
>> Follow this link to subscribe/unsubscribe:
>> http://public.kitware.com/mailman/listinfo/paraview
>> 

-- 
✐Richard Cook   
✇ Lawrence Livermore National Laboratory
Bldg-453 Rm-4024, Mail Stop L-557        
7000 East Avenue,  Livermore, CA, 94550, USA
☎ (office) (925) 423-9605    
☎ (fax) (925) 423-6961
---
Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
(opinions expressed herein are mine and not those of LLNL)





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