[Paraview] MacOSX Linking problems

[Brickle Macho]

Thanks to both for your quick response.

 From a clean/new build directory I tried your suggestion of 
-DVTK_USE_SYSTEM_HDF5=ON   I received a different error (fragment 
below), which looks like it not finding some HDF5 headers.

I will keep investigating.  Obviously something strange about my setup 
or use of Macports.

Thanks again.

Michael.


------------ new error
Linking CXX executable ../../../../bin/ChartsCxxTests
[ 34%] Built target ChartsCxxTests
Scanning dependencies of target Xdmf
[ 34%] Building CXX object 
Utilities/Xdmf2/libsrc/CMakeFiles/Xdmf.dir/XdmfArray.cxx.o
In file included from 
/Users/michael/PhD/ExistingSoftware/ParaView-3.14.1-Source/Utilities/Xdmf2/libsrc/XdmfDataDesc.h:29,
                  from 
/Users/michael/PhD/ExistingSoftware/ParaView-3.14.1-Source/Utilities/Xdmf2/libsrc/XdmfArray.h:28,
                  from 
/Users/michael/PhD/ExistingSoftware/ParaView-3.14.1-Source/Utilities/Xdmf2/libsrc/XdmfArray.cxx:25:
/Users/michael/PhD/ExistingSoftware/ParaView-3.14.1-Source/Utilities/Xdmf2/libsrc/XdmfHDFSupport.h:30:22: 
error: H5public.h: No such file or directory
/Users/michael/PhD/ExistingSoftware/ParaView-3.14.1-Source/Utilities/Xdmf2/libsrc/XdmfHDFSupport.h:36:18: 
error: hdf5.h: No such file or directory


On 12/10/12 4:03 AM, Pat Marion wrote:
> Oops, I meant to say you should set VTK_USE_SYSTEM_HDF5 to ON.
>
> Pat
>
> On Thu, Oct 11, 2012 at 4:02 PM, Pat Marion <pat.marion at kitware.com 
> <mailto:pat.marion at kitware.com>> wrote:
>
>     It looks the compiler included system HDF5 headers even though
>     VTK_USE_SYSTEM_HDF5 is disabled.  Then, at link time it doesn't
>     link the system HDF5 libraries because VTK_USE_SYSTEM_HDF5 if
>     off.  You could try running cmake in the build dir and setting
>     VTK_USE_SYSTEM_HDF5 to OFF.
>
>     I think this might be caused by a tricky a bug in VTK's cmake
>     scripts.  I guess CMake would need to add -IVTK/Utilities/vtkhdf5
>     before -I/opt/local/include when system hdf5 is off.
>
>     Pat
>
>
>     On Thu, Oct 11, 2012 at 3:46 PM, Brickle Macho
>     <bricklemacho at gmail.com <mailto:bricklemacho at gmail.com>> wrote:
>
>         Hi,
>
>         I am trying to build ParaView on my MacBook and I am getting a
>         list of undefined symbols.  Below is the first of about 35+
>         similar errors.  For info all of the required supporting
>         packages were installed by Macports.   I downloaded
>         ParaView-3.14.1-Source from the website and created a separate
>         build directory. I received a that I was running Qt 4.8.3
>         whereas the officially supported version is Qt 4.6.
>
>         In case it is related, I had an earlier problem where during
>         compiling the generated makefile was expecting some Qt file
>         under files in /opt/local/lib/Resources/... whereas they were
>         in
>         /opt/local/Library/Frameworks/QtGui.framework/Versions/4/Resources/...
>         I resolved this by creating a symbolic link in /opt/local/lib
>
>         Not sure where to start to solve the problem. Any help
>         appreciated.
>
>         Regards,
>
>         Michael.
>         --
>
>         ------- Linking problem below ---------------
>
>         [ 75%] Built target vtkPVVTKExtensionsCS
>         Linking CXX executable
>         ../../../bin/ParaViewCoreVTKExtensionsPrintSelf
>         Undefined symbols for architecture x86_64:
>           "_H5check_version", referenced from:
>               vtkEnzoReaderInternal::GetAttributeNames() in
>         libvtkPVVTKExtensions.a(vtkEnzoReader.cxx.o)
>               vtkEnzoReader::LoadAttribute(char const*, int)in
>         libvtkPVVTKExtensions.a(vtkEnzoReader.cxx.o)
>               vtkEnzoReader::GetParticles(int, vtkPolyData*, int,
>         int)in libvtkPVVTKExtensions.a(vtkEnzoReader.cxx.o)
>               vtkFlashReaderInternal::ReadMetaData()       in
>         libvtkPVVTKExtensions.a(vtkFlashReader.cxx.o)
>               vtkFlashReaderInternal::GetTime()      in
>         libvtkPVVTKExtensions.a(vtkFlashReader.cxx.o)
>               vtkFlashReaderInternal::GetCycle()      in
>         libvtkPVVTKExtensions.a(vtkFlashReader.cxx.o)
>              (maybe you meant: _vtk__H5check_version)
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