[Paraview] Clean to Grid/resampling issue with Paraview 3.12
Russell M. Taylor II
taylorr at cs.unc.edu
Tue Jan 31 21:21:41 EST 2012
Thank you for making ParaView! It is a tool we use all the time, and
I'm using it to teach my visualization class. Students with Windows,
Mac, and Linux are all able to do quite effective visualizations with it.
I attach a Paraview State file that demonstrates a resampling issue
in ParaView. This may be a problem in VTK, not sure.
The problem is that when you resample a lower-resolution 3D volume
that has gone through the "Clean to Grid" filter and then a Transform
filter, a "Resample with Dataset" filter misses samples in the middle
of the volume.
This resampling works fine if you use the Tetrahedralize filter
instead of the "Clean to Grid" filter.
I encountered this while merging PET, CT, and MRI data sets to
produce a homework exercise using ParaView for my visualization
class. I can work around it using Tetrahedralize, but wanted to let
people know that there is an issue.
In the attached file, if you right-click on the Transform filter and
change its input to Tetrahedralize, the holes in the middle go away
(as they should).
Thanks,
Russ
---
Russell M. Taylor II, Ph.D. taylorr at cs.unc.edu
CB #3175, Sitterson Hall www.cs.unc.edu/~taylorr
University of North Carolina, Voice: (919) 962-1701
Chapel Hill, NC 27599-3175 FAX: (919) 962-1799
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<Element index="0" value="0.75"/>
<Domain name="range" id="263.KeyLightIntensity.range"/>
</Property>
<Property name="KeyLightWarmth" id="263.KeyLightWarmth" number_of_elements="1">
<Element index="0" value="0.6"/>
<Domain name="range" id="263.KeyLightWarmth.range"/>
</Property>
<Property name="LODResolution" id="263.LODResolution" number_of_elements="1">
<Element index="0" value="50"/>
<Domain name="range" id="263.LODResolution.range"/>
</Property>
<Property name="LODThreshold" id="263.LODThreshold" number_of_elements="1">
<Element index="0" value="1e+299"/>
<Domain name="range" id="263.LODThreshold.range"/>
</Property>
<Property name="LightAmbientColor" id="263.LightAmbientColor" number_of_elements="3">
<Element index="0" value="1"/>
<Element index="1" value="1"/>
<Element index="2" value="1"/>
<Domain name="range" id="263.LightAmbientColor.range"/>
</Property>
<Property name="LightDiffuseColor" id="263.LightDiffuseColor" number_of_elements="3">
<Element index="0" value="1"/>
<Element index="1" value="1"/>
<Element index="2" value="1"/>
<Domain name="range" id="263.LightDiffuseColor.range"/>
</Property>
<Property name="LightIntensity" id="263.LightIntensity" number_of_elements="1">
<Element index="0" value="1"/>
<Domain name="range" id="263.LightIntensity.range"/>
</Property>
<Property name="LightSpecularColor" id="263.LightSpecularColor" number_of_elements="3">
<Element index="0" value="1"/>
<Element index="1" value="1"/>
<Element index="2" value="1"/>
<Domain name="range" id="263.LightSpecularColor.range"/>
</Property>
<Property name="LightSwitch" id="263.LightSwitch" number_of_elements="1">
<Element index="0" value="0"/>
<Domain name="bool" id="263.LightSwitch.bool"/>
</Property>
<Property name="LightType" id="263.LightType" number_of_elements="1">
<Element index="0" value="1"/>
<Domain name="enum" id="263.LightType.enum">
<Entry value="1" text="HeadLight"/>
<Entry value="2" text="CameraLight"/>
<Entry value="3" text="SceneLight"/>
</Domain>
</Property>
<Property name="MaintainLuminance" id="263.MaintainLuminance" number_of_elements="1">
<Element index="0" value="0"/>
<Domain name="bool" id="263.MaintainLuminance.bool"/>
</Property>
<Property name="MaximumNumberOfPeels" id="263.MaximumNumberOfPeels" number_of_elements="1">
<Element index="0" value="4"/>
<Domain name="range" id="263.MaximumNumberOfPeels.range"/>
</Property>
<Property name="MultiSamples" id="263.MultiSamples" number_of_elements="1">
<Element index="0" value="0"/>
</Property>
<Property name="NonInteractiveRenderDelay" id="263.NonInteractiveRenderDelay" number_of_elements="1">
<Element index="0" value="2"/>
</Property>
<Property name="OrientationAxesInteractivity" id="263.OrientationAxesInteractivity" number_of_elements="1">
<Element index="0" value="0"/>
<Domain name="bool" id="263.OrientationAxesInteractivity.bool"/>
</Property>
<Property name="OrientationAxesLabelColor" id="263.OrientationAxesLabelColor" number_of_elements="3">
<Element index="0" value="1"/>
<Element index="1" value="1"/>
<Element index="2" value="1"/>
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<Property name="OrientationAxesOutlineColor" id="263.OrientationAxesOutlineColor" number_of_elements="3">
<Element index="0" value="1"/>
<Element index="1" value="1"/>
<Element index="2" value="1"/>
</Property>
<Property name="OrientationAxesVisibility" id="263.OrientationAxesVisibility" number_of_elements="1">
<Element index="0" value="0"/>
<Domain name="bool" id="263.OrientationAxesVisibility.bool"/>
</Property>
<Property name="RemoteRenderThreshold" id="263.RemoteRenderThreshold" number_of_elements="1">
<Element index="0" value="3"/>
<Domain name="range" id="263.RemoteRenderThreshold.range"/>
</Property>
<Property name="Representations" id="263.Representations" number_of_elements="7">
<Proxy value="303"/>
<Proxy value="470"/>
<Proxy value="486"/>
<Proxy value="507"/>
<Proxy value="520"/>
<Proxy value="530"/>
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</Property>
<Property name="ResetCamera" id="263.ResetCamera"/>
<Property name="StencilCapable" id="263.StencilCapable" number_of_elements="1">
<Element index="0" value="1"/>
<Domain name="bool" id="263.StencilCapable.bool"/>
</Property>
<Property name="StereoCapableWindow" id="263.StereoCapableWindow" number_of_elements="1">
<Element index="0" value="1"/>
<Domain name="bool" id="263.StereoCapableWindow.bool"/>
</Property>
<Property name="StereoRender" id="263.StereoRender" number_of_elements="1">
<Element index="0" value="0"/>
<Domain name="bool" id="263.StereoRender.bool"/>
</Property>
<Property name="StereoType" id="263.StereoType" number_of_elements="1">
<Element index="0" value="2"/>
<Domain name="enum" id="263.StereoType.enum">
<Entry value="1" text="Crystal Eyes"/>
<Entry value="2" text="Red-Blue"/>
<Entry value="3" text="Interlaced"/>
<Entry value="4" text="Left"/>
<Entry value="5" text="Right"/>
<Entry value="6" text="Dresden"/>
<Entry value="7" text="Anaglyph"/>
<Entry value="8" text="Checkerboard"/>
</Domain>
</Property>
<Property name="StillRenderImageReductionFactor" id="263.StillRenderImageReductionFactor" number_of_elements="1">
<Element index="0" value="1"/>
<Domain name="range" id="263.StillRenderImageReductionFactor.range"/>
</Property>
<Property name="UseGradientBackground" id="263.UseGradientBackground" number_of_elements="1">
<Element index="0" value="0"/>
<Domain name="bool" id="263.UseGradientBackground.bool"/>
</Property>
<Property name="UseInteractiveRenderingForSceenshots" id="263.UseInteractiveRenderingForSceenshots" number_of_elements="1">
<Element index="0" value="0"/>
<Domain name="bool" id="263.UseInteractiveRenderingForSceenshots.bool"/>
</Property>
<Property name="UseLight" id="263.UseLight" number_of_elements="1">
<Element index="0" value="1"/>
<Domain name="bool" id="263.UseLight.bool"/>
</Property>
<Property name="UseOffscreenRendering" id="263.UseOffscreenRendering" number_of_elements="1">
<Element index="0" value="0"/>
<Domain name="bool" id="263.UseOffscreenRendering.bool"/>
</Property>
<Property name="UseOffscreenRenderingForScreenshots" id="263.UseOffscreenRenderingForScreenshots" number_of_elements="1">
<Element index="0" value="1"/>
<Domain name="bool" id="263.UseOffscreenRenderingForScreenshots.bool"/>
</Property>
<Property name="UseTexturedBackground" id="263.UseTexturedBackground" number_of_elements="1">
<Element index="0" value="0"/>
<Domain name="bool" id="263.UseTexturedBackground.bool"/>
</Property>
<Property name="ViewPosition" id="263.ViewPosition" number_of_elements="2">
<Element index="0" value="0"/>
<Element index="1" value="0"/>
</Property>
<Property name="ViewSize" id="263.ViewSize" number_of_elements="2">
<Element index="0" value="825"/>
<Element index="1" value="731"/>
</Property>
<Property name="ViewTime" id="263.ViewTime" number_of_elements="1">
<Element index="0" value="0"/>
<Domain name="range" id="263.ViewTime.range"/>
</Property>
<Property name="CameraClippingRange" id="263.CameraClippingRange" number_of_elements="2">
<Element index="0" value="107.497"/>
<Element index="1" value="129.533"/>
</Property>
<Property name="CameraClippingRangeInfo" id="263.CameraClippingRangeInfo" number_of_elements="2">
<Element index="0" value="107.497"/>
<Element index="1" value="129.533"/>
</Property>
<Property name="CameraFocalPoint" id="263.CameraFocalPoint" number_of_elements="3">
<Element index="0" value="0"/>
<Element index="1" value="0"/>
<Element index="2" value="0"/>
</Property>
<Property name="CameraFocalPointInfo" id="263.CameraFocalPointInfo" number_of_elements="3">
<Element index="0" value="0"/>
<Element index="1" value="0"/>
<Element index="2" value="0"/>
</Property>
<Property name="CameraParallelProjection" id="263.CameraParallelProjection" number_of_elements="1">
<Element index="0" value="0"/>
<Domain name="bool" id="263.CameraParallelProjection.bool"/>
</Property>
<Property name="CameraParallelScale" id="263.CameraParallelScale" number_of_elements="1">
<Element index="0" value="14.1421"/>
</Property>
<Property name="CameraParallelScaleInfo" id="263.CameraParallelScaleInfo" number_of_elements="1">
<Element index="0" value="14.1421"/>
</Property>
<Property name="CameraPosition" id="263.CameraPosition" number_of_elements="3">
<Element index="0" value="-111.49"/>
<Element index="1" value="-19.9177"/>
<Element index="2" value="29.871"/>
</Property>
<Property name="CameraPositionInfo" id="263.CameraPositionInfo" number_of_elements="3">
<Element index="0" value="-111.49"/>
<Element index="1" value="-19.9177"/>
<Element index="2" value="29.871"/>
</Property>
<Property name="CameraViewAngle" id="263.CameraViewAngle" number_of_elements="1">
<Element index="0" value="30"/>
</Property>
<Property name="CameraViewUp" id="263.CameraViewUp" number_of_elements="3">
<Element index="0" value="0.237209"/>
<Element index="1" value="0.118291"/>
<Element index="2" value="0.96423"/>
</Property>
<Property name="CameraViewUpInfo" id="263.CameraViewUpInfo" number_of_elements="3">
<Element index="0" value="0.237209"/>
<Element index="1" value="0.118291"/>
<Element index="2" value="0.96423"/>
</Property>
<Property name="EyeAngle" id="263.EyeAngle" number_of_elements="1">
<Element index="0" value="2"/>
<Domain name="range" id="263.EyeAngle.range"/>
</Property>
<Property name="HeadPose" id="263.HeadPose" number_of_elements="16">
<Element index="0" value="1"/>
<Element index="1" value="0"/>
<Element index="2" value="0"/>
<Element index="3" value="0"/>
<Element index="4" value="0"/>
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<Element index="9" value="0"/>
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<Element index="12" value="0"/>
<Element index="13" value="0"/>
<Element index="14" value="0"/>
<Element index="15" value="1"/>
</Property>
<Property name="WandPose" id="263.WandPose" number_of_elements="16">
<Element index="0" value="1"/>
<Element index="1" value="0"/>
<Element index="2" value="0"/>
<Element index="3" value="0"/>
<Element index="4" value="0"/>
<Element index="5" value="1"/>
<Element index="6" value="0"/>
<Element index="7" value="0"/>
<Element index="8" value="0"/>
<Element index="9" value="0"/>
<Element index="10" value="1"/>
<Element index="11" value="0"/>
<Element index="12" value="0"/>
<Element index="13" value="0"/>
<Element index="14" value="0"/>
<Element index="15" value="1"/>
</Property>
</Proxy>
<ProxyCollection name="animation">
<Item id="259" name="AnimationScene1"/>
<Item id="260" name="TimeAnimationCue1"/>
</ProxyCollection>
<ProxyCollection name="lookup_tables">
<Item id="417" name="1.Iterations.PVLookupTable"/>
<Item id="321" name="1.RTData.PVLookupTable"/>
</ProxyCollection>
<ProxyCollection name="piecewise_functions">
<Item id="418" name="1.Iterations.PiecewiseFunction"/>
<Item id="322" name="1.RTData.PiecewiseFunction"/>
</ProxyCollection>
<ProxyCollection name="pq_helper_proxies.291">
<Item id="292" name="RepresentationAnimationHelper"/>
</ProxyCollection>
<ProxyCollection name="pq_helper_proxies.458">
<Item id="459" name="RepresentationAnimationHelper"/>
</ProxyCollection>
<ProxyCollection name="pq_helper_proxies.472">
<Item id="473" name="RepresentationAnimationHelper"/>
</ProxyCollection>
<ProxyCollection name="pq_helper_proxies.488">
<Item id="490" name="RepresentationAnimationHelper"/>
<Item id="489" name="Transform"/>
</ProxyCollection>
<ProxyCollection name="pq_helper_proxies.509">
<Item id="510" name="CutFunction"/>
<Item id="511" name="CutFunction"/>
<Item id="512" name="CutFunction"/>
<Item id="513" name="RepresentationAnimationHelper"/>
</ProxyCollection>
<ProxyCollection name="pq_helper_proxies.522">
<Item id="523" name="RepresentationAnimationHelper"/>
</ProxyCollection>
<ProxyCollection name="pq_helper_proxies.532">
<Item id="533" name="RepresentationAnimationHelper"/>
</ProxyCollection>
<ProxyCollection name="representations">
<Item id="303" name="DataRepresentation1"/>
<Item id="507" name="DataRepresentation10"/>
<Item id="520" name="DataRepresentation11"/>
<Item id="530" name="DataRepresentation12"/>
<Item id="546" name="DataRepresentation13"/>
<Item id="470" name="DataRepresentation8"/>
<Item id="486" name="DataRepresentation9"/>
</ProxyCollection>
<ProxyCollection name="sources">
<Item id="472" name="CleantoGrid2"/>
<Item id="522" name="ResampleWithDataset1"/>
<Item id="509" name="Slice3"/>
<Item id="532" name="Tetrahedralize1"/>
<Item id="488" name="Transform2"/>
<Item id="291" name="Wavelet1"/>
<Item id="458" name="Wavelet2"/>
</ProxyCollection>
<ProxyCollection name="timekeeper">
<Item id="256" name="TimeKeeper"/>
</ProxyCollection>
<ProxyCollection name="views">
<Item id="263" name="RenderView1"/>
</ProxyCollection>
<CustomProxyDefinitions/>
<Links/>
<GlobalPropertiesManagers>
<GlobalPropertiesManager group="misc" type="GlobalProperties" name="ParaViewProperties">
<Link global_name="BackgroundColor" proxy="263" property="Background"/>
<Link global_name="EdgeColor" proxy="303" property="EdgeColor"/>
<Link global_name="EdgeColor" proxy="470" property="EdgeColor"/>
<Link global_name="EdgeColor" proxy="486" property="EdgeColor"/>
<Link global_name="EdgeColor" proxy="507" property="EdgeColor"/>
<Link global_name="EdgeColor" proxy="520" property="EdgeColor"/>
<Link global_name="EdgeColor" proxy="530" property="EdgeColor"/>
<Link global_name="EdgeColor" proxy="546" property="EdgeColor"/>
<Link global_name="ForegroundColor" proxy="303" property="AmbientColor"/>
<Link global_name="ForegroundColor" proxy="303" property="CubeAxesColor"/>
<Link global_name="ForegroundColor" proxy="470" property="AmbientColor"/>
<Link global_name="ForegroundColor" proxy="470" property="CubeAxesColor"/>
<Link global_name="ForegroundColor" proxy="486" property="AmbientColor"/>
<Link global_name="ForegroundColor" proxy="486" property="CubeAxesColor"/>
<Link global_name="ForegroundColor" proxy="507" property="AmbientColor"/>
<Link global_name="ForegroundColor" proxy="507" property="CubeAxesColor"/>
<Link global_name="ForegroundColor" proxy="520" property="AmbientColor"/>
<Link global_name="ForegroundColor" proxy="520" property="CubeAxesColor"/>
<Link global_name="ForegroundColor" proxy="530" property="AmbientColor"/>
<Link global_name="ForegroundColor" proxy="530" property="CubeAxesColor"/>
<Link global_name="ForegroundColor" proxy="546" property="AmbientColor"/>
<Link global_name="ForegroundColor" proxy="546" property="CubeAxesColor"/>
<Link global_name="SelectionColor" proxy="303" property="SelectionColor"/>
<Link global_name="SelectionColor" proxy="470" property="SelectionColor"/>
<Link global_name="SelectionColor" proxy="486" property="SelectionColor"/>
<Link global_name="SelectionColor" proxy="507" property="SelectionColor"/>
<Link global_name="SelectionColor" proxy="520" property="SelectionColor"/>
<Link global_name="SelectionColor" proxy="530" property="SelectionColor"/>
<Link global_name="SelectionColor" proxy="546" property="SelectionColor"/>
<Link global_name="SurfaceColor" proxy="303" property="DiffuseColor"/>
<Link global_name="SurfaceColor" proxy="303" property="BackfaceDiffuseColor"/>
<Link global_name="SurfaceColor" proxy="470" property="DiffuseColor"/>
<Link global_name="SurfaceColor" proxy="470" property="BackfaceDiffuseColor"/>
<Link global_name="SurfaceColor" proxy="486" property="DiffuseColor"/>
<Link global_name="SurfaceColor" proxy="486" property="BackfaceDiffuseColor"/>
<Link global_name="SurfaceColor" proxy="507" property="DiffuseColor"/>
<Link global_name="SurfaceColor" proxy="507" property="BackfaceDiffuseColor"/>
<Link global_name="SurfaceColor" proxy="520" property="DiffuseColor"/>
<Link global_name="SurfaceColor" proxy="520" property="BackfaceDiffuseColor"/>
<Link global_name="SurfaceColor" proxy="530" property="DiffuseColor"/>
<Link global_name="SurfaceColor" proxy="530" property="BackfaceDiffuseColor"/>
<Link global_name="SurfaceColor" proxy="546" property="DiffuseColor"/>
<Link global_name="SurfaceColor" proxy="546" property="BackfaceDiffuseColor"/>
</GlobalPropertiesManager>
</GlobalPropertiesManagers>
</ServerManagerState>
<ViewManager version="3.12.0">
<MultiView>
<Splitter index="0" orientation="Vertical" count="1" sizes="755"/>
</MultiView>
<Frame index="0" view_module="263"/>
</ViewManager>
</ParaView>
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