[Paraview] 3.12.0 building issues due to Protobuf

[Paul McIntosh]

Thanks John,

I couldn't find any libstdc++ lib lurking anywhere.

With a bit more investigation it looks like the "protoc" compiler is built
correctly, however when it is called on to build some protocols it is not
finding the libraries it was built with. So the protoc step fails and
therefore the rest of the build fails as it requires the output of protoc.

I can reproduce the problem externally by unsetting and setting paths, I
just need to work out how it is called in the cmake build and how to force
it to use the correct environment.

Cheers,

Paul

-----Original Message-----
From: Biddiscombe, John A. [mailto:biddisco at cscs.ch] 
Sent: Friday, 23 December 2011 9:15 PM
To: Paul McIntosh; paraview at paraview.org
Subject: RE: [Paraview] 3.12.0 building issues due to Protobuf

I had a very similar problem on our cray (i.e. same error message), but it
was not caused by protobuf. 
We have the standard libs in /usr/lib64, but when using icc/ifort the
libstdc++ lib from /opt/cray/blah/blah/something something should be linked
and not the one from /usr/lib64

Have a look and see if there is another libstdc++ in a special gcc/4.4.5 dir
somewhere - since you're using gcc (I was using icc) it may not be so
trivial.

JB

-----Original Message-----
From: paraview-bounces at paraview.org [mailto:paraview-bounces at paraview.org]
On Behalf Of Paul McIntosh
Sent: 22 December 2011 03:48
To: paraview at paraview.org
Subject: [Paraview] 3.12.0 building issues due to Protobuf

Hi All,

Just wondering if anyone has come across this problem and worked around it?

I am using modules and have the following configuration where I have
protobuf built and available in /usr/local/protobuf/2.4.1

Currently Loaded Modulefiles:
  1) gmp/4.3.1           3) gcc/4.4.5           5) qt/4.6.2            7)
virtualgl/2.2.90    9) cmake/2.8.3
  2) mpfr/2.4.2          4) openmpi-gcc/1.4.3   6) python/2.7.1-gcc    8)
paraview/3.10.1    10) protobuf/2.4.1

The ParaView protobuf build seems to be doing everything on it's own,
ignoring compiler paths, prebuilt libraries etc, with no cmake options
except for switching on and off tests. So everything else builds but I get
stuck below. 

[ 84%] Generating vtkPVMessage.pb.h, vtkPVMessage.pb.cc
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/protoc:
/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.10' not found (required by
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/libprotobuf.so)
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/protoc:
/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.10' not found (required by
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/libprotoc.so)
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/protoc:
/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9' not found (required by
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/libprotoc.so)
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/protoc:
/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.11' not found (required by
/usr/local/src/PARAVIEW/3.12.0/ParaView-Build/bin/libprotoc.so)
[ 84%] Built target protobuf_code_generation [ 84%] Building CXX object
ParaViewCore/ServerImplementation/CMakeFiles/vtkPVServerImplementation.dir/v
tkPVSessionBase.cxx.o
In file included from
/usr/local/src/PARAVIEW/3.12.0/ParaView-3.12.0/ParaViewCore/ServerImplementa
tion/vtkPVSessionBase.cxx:22:
/usr/local/src/PARAVIEW/3.12.0/ParaView-3.12.0/ParaViewCore/ServerImplementa
tion/vtkSMMessage.h:30:29: error: vtkPVMessage.pb.h: No such file or
directory In file included from
/usr/local/src/PARAVIEW/3.12.0/ParaView-3.12.0/ParaViewCore/ServerImplementa
tion/vtkPVSessionBase.cxx:22:
/usr/local/src/PARAVIEW/3.12.0/ParaView-3.12.0/ParaViewCore/ServerImplementa
tion/vtkSMMessage.h:38: error: expected unqualified-id before â&â token
/usr/local/src/PARAVIEW/3.12.0/ParaView-3.12.0/ParaViewCore/ServerImplementa
tion/vtkSMMessage.h:38: error: expected â)â before â&â token
/usr/local/src/PARAVIEW/3.12.0/ParaView-3.12.0/ParaViewCore/ServerImplementa
tion/vtkSMMessage.h:38: error: expected initializer before â&â token
make[2]: ***
[ParaViewCore/ServerImplementation/CMakeFiles/vtkPVServerImplementation.dir/
vtkPVSessionBase.cxx.o] Error 1
make[1]: ***
[ParaViewCore/ServerImplementation/CMakeFiles/vtkPVServerImplementation.dir/
all] Error 2
make: *** [all] Error 2

Any hints?

Cheers,

Paul
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