[Paraview] Trouble running Paraview OSMesa in parallel on cluster

Fri Nov 11 18:30:44 EST 2011

I posted the CMakeCache.txt.  I also have tried to step through the code using TotalView and I can see it calling MPI_init() etc.  It looks like one process correctly gets rank 0 and one gets rank 1 (by inspecting process_id variable in RealMain())
If I start in serial, it connects and I can view a protein molecule successfully.  If I start in parallel, exactly one server tries and fails to connect.  Am I supposed to give any extra arguments when starting in parallel?  
This is what I'm doing: 

 mpiexec -np 2 /usr/global/tools/Kitware/Paraview/3.12.0-OSMesa/chaos_4_x86_64_ib/bin/pvserver --use-offscreen-rendering  --reverse-connection  --client-host=localhost

On Nov 11, 2011, at 11:11 AM, Utkarsh Ayachit wrote:

> Can you post your CMakeCache.txt?
> 
> Utkarsh
> 
> On Fri, Nov 11, 2011 at 2:08 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>> Hi, thanks, but you are incorrect.
>> I did set that variable and it was indeed compiled with MPI, as I said.
>> 
>> rcook at prism127 (IMG_private): type pvserver
>> pvserver is /usr/global/tools/Kitware/Paraview/3.12.0-OSMesa/chaos_4_x86_64_ib/bin/pvserver
>> rcook at prism127 (IMG_private): ldd  /usr/global/tools/Kitware/Paraview/3.12.0-OSMesa/chaos_4_x86_64_ib/bin/pvserver
>>        libmpi.so.0 => /usr/local/tools/openmpi-gnu-1.4.3/lib/libmpi.so.0 (0x00002aaaaacc9000)
>>        libopen-rte.so.0 => /usr/local/tools/openmpi-gnu-1.4.3/lib/libopen-rte.so.0 (0x00002aaaaaf6c000)
>>        libopen-pal.so.0 => /usr/local/tools/openmpi-gnu-1.4.3/lib/libopen-pal.so.0 (0x00002aaaab1b7000)
>>        libdl.so.2 => /lib64/libdl.so.2 (0x00002aaaab434000)
>>        libnsl.so.1 => /lib64/libnsl.so.1 (0x00002aaaab638000)
>>        libutil.so.1 => /lib64/libutil.so.1 (0x00002aaaab850000)
>>        libm.so.6 => /lib64/libm.so.6 (0x00002aaaaba54000)
>>        libpthread.so.0 => /lib64/libpthread.so.0 (0x00002aaaabcd7000)
>>        libc.so.6 => /lib64/libc.so.6 (0x00002aaaabef2000)
>>        /lib64/ld-linux-x86-64.so.2 (0x00002aaaaaaab000)
>> 
>> When the pvservers are running, I can see that they are the correct binaries, and ldd confirms they are MPI-capable.
>> 
>> rcook at prism120 (~): ldd  /collab/usr/global/tools/Kitware/Paraview/3.12.0-OSMesa/chaos_4_x86_64_ib/lib/paraview-3.12/pvserver | grep mpi
>>        libmpi_cxx.so.0 => /usr/local/tools/openmpi-gnu-1.4.3/lib/libmpi_cxx.so.0 (0x00002aaab23bf000)
>>        libmpi.so.0 => /usr/local/tools/openmpi-gnu-1.4.3/lib/libmpi.so.0 (0x00002aaab25da000)
>>        libopen-rte.so.0 => /usr/local/tools/openmpi-gnu-1.4.3/lib/libopen-rte.so.0 (0x00002aaab287d000)
>>        libopen-pal.so.0 => /usr/local/tools/openmpi-gnu-1.4.3/lib/libopen-pal.so.0 (0x00002aaab2ac7000)
>> 
>> 
>> On Nov 11, 2011, at 11:04 AM, Utkarsh Ayachit wrote:
>> 
>>> Your pvserver is not built with MPI enabled. Please rebuild pvserver
>>> with CMake variable PARAVIEW_USE_MPI:BOOL=ON.
>>> 
>>> Utkarsh
>>> 
>>> On Fri, Nov 11, 2011 at 1:54 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>>> We have a tricky firewall situation here so I have to use reverse tunneling per http://www.paraview.org/Wiki/Reverse_connection_and_port_forwarding#Reverse_Connection_Over_an_ssh_Tunnel
>>>> 
>>>> I'm not sure I'm doing it right.  I can do it with a single server, but when I try to run in parallel, it looks like something is broken.  My understanding is that when launched under MPI, the servers should talk to eachother and only one of the servers should try to connect back to the client.  I compiled with MPI, and am running in an MPI environment, but it looks as though the pvservers are not talking to each other but are each trying to make their own connection to the client.  Below is the output.  Can anyone help me get this up and running?  I know I'm close.
>>>> 
>>>> Thanks!
>>>> 
>>>> rcook at prism127 (IMG_private): srun -n 8 /usr/global/tools/Kitware/Paraview/3.12.0-OSMesa/chaos_4_x86_64_ib/bin/pvserver --use-offscreen-rendering  --reverse-connection  --client-host=localhost
>>>> Waiting for client
>>>> Connection URL: csrc://localhost:11111
>>>> Client connected.
>>>> Waiting for client
>>>> Connection URL: csrc://localhost:11111
>>>> ERROR: In /nfs/tmp2/rcook/ParaView/3.12.0/ParaView-3.12.0/VTK/Common/vtkSocket.cxx, line 481
>>>> vtkClientSocket (0xd8ee20): Socket error in call to connect. Connection refused.
>>>> 
>>>> ERROR: In /nfs/tmp2/rcook/ParaView/3.12.0/ParaView-3.12.0/VTK/Common/vtkClientSocket.cxx, line 53
>>>> vtkClientSocket (0xd8ee20): Failed to connect to server localhost:11111
>>>> 
>>>> Warning: In /nfs/tmp2/rcook/ParaView/3.12.0/ParaView-3.12.0/ParaViewCore/ClientServerCore/vtkTCPNetworkAccessManager.cxx, line 250
>>>> vtkTCPNetworkAccessManager (0x6619a0): Connect failed.  Retrying for 59.9994 more seconds.
>>>> 
>>>> ERROR: In /nfs/tmp2/rcook/ParaView/3.12.0/ParaView-3.12.0/VTK/Common/vtkSocket.cxx, line 481
>>>> vtkClientSocket (0xd8ee20): Socket error in call to connect. Connection refused.
>>>> 
>>>> ERROR: In /nfs/tmp2/rcook/ParaView/3.12.0/ParaView-3.12.0/VTK/Common/vtkClientSocket.cxx, line 53
>>>> vtkClientSocket (0xd8ee20): Failed to connect to server localhost:11111
>>>> 
>>>> Warning: In /nfs/tmp2/rcook/ParaView/3.12.0/ParaView-3.12.0/ParaViewCore/ClientServerCore/vtkTCPNetworkAccessManager.cxx, line 250
>>>> vtkTCPNetworkAccessManager (0x6619a0): Connect failed.  Retrying for 58.9972 more seconds.
>>>> 
>>>> ERROR: In /nfs/tmp2/rcook/ParaView/3.12.0/ParaView-3.12.0/VTK/Common/vtkSocket.cxx, line 481
>>>> vtkClientSocket (0xd8ee20): Socket error in call to connect. Connection refused.
>>>> 
>>>> ERROR: In /nfs/tmp2/rcook/ParaView/3.12.0/ParaView-3.12.0/VTK/Common/vtkClientSocket.cxx, line 53
>>>> vtkClientSocket (0xd8ee20): Failed to connect to server localhost:11111
>>>> 
>>>> Warning: In /nfs/tmp2/rcook/ParaView/3.12.0/ParaView-3.12.0/ParaViewCore/ClientServerCore/vtkTCPNetworkAccessManager.cxx, line 250
>>>> vtkTCPNetworkAccessManager (0x6619a0): Connect failed.  Retrying for 57.9952 more seconds.
>>>> 
>>>> 
>>>> etc. etc. etc.
>>>> --
>>>> ✐Richard Cook
>>>> ✇ Lawrence Livermore National Laboratory
>>>> Bldg-453 Rm-4024, Mail Stop L-557
>>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>>> ☎ (office) (925) 423-9605
>>>> ☎ (fax) (925) 423-6961
>>>> ---
>>>> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
>>>> (opinions expressed herein are mine and not those of LLNL)
>>>> 
>>>> 
>>>> 
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>> 
>> --
>> ✐Richard Cook
>> ✇ Lawrence Livermore National Laboratory
>> Bldg-453 Rm-4024, Mail Stop L-557
>> 7000 East Avenue,  Livermore, CA, 94550, USA
>> ☎ (office) (925) 423-9605
>> ☎ (fax) (925) 423-6961
>> ---
>> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
>> (opinions expressed herein are mine and not those of LLNL)
>> 
>> 
>> 
>> 

-- 
✐Richard Cook   
✇ Lawrence Livermore National Laboratory
Bldg-453 Rm-4024, Mail Stop L-557        
7000 East Avenue,  Livermore, CA, 94550, USA
☎ (office) (925) 423-9605    
☎ (fax) (925) 423-6961
---
Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
(opinions expressed herein are mine and not those of LLNL)