[Paraview] PV 3.10.1 - compile error w.r.t. MapReduceMPI

Paul Melis paul.melis at sara.nl
Fri Aug 5 10:47:54 EDT 2011


Hi David,

On 08/05/2011 02:55 PM, David Partyka wrote:
> Have you turned MPI On then Off and then back On again? I've seen it get
> confused when this happens. 

Tried that, doesn't help, unfortunately

> Can you try a fresh (delete your build tree)
> build of 3.10.1 and turn everything on at once?

A fresh build in a clean build directory (together with the cmake line
below) doesn't solve the problem. Note that I'm not setting the openmpi
header/library locations directly, but let CMake detect them. I assume
that's not a problem?

Regards,
Paul

> 
> On Fri, Aug 5, 2011 at 8:15 AM, Paul Melis <paul.melis at sara.nl
> <mailto:paul.melis at sara.nl>> wrote:
> 
>     Hi,
> 
>     I'm building PV 3.8.1 and PV 3.10.1 on exactly the same Debian 6.0
>     system (64-bit) system using the exact same CMAKE configuration lines:
> 
>     #!/bin/sh
>     cmake \
>        -DCMAKE_BUILD_TYPE=Release \
>        -DMANTA_BUILD=$HOME/c/manta-2439-build \
>        -DMANTA_SOURCE=$HOME/c/manta-2439 \
>        -DPARAVIEW_BUILD_PLUGIN_Manta=ON \
>        -DPARAVIEW_ENABLE_PYTHON=ON \
>        -DPARAVIEW_USE_MPI=ON \
>        <source-dir>
> 
>     The 3.8.1 build succeeds, but the 3.10.1 buid fails because mpi.h is not
>     being found:
> 
>     [  4%] Built target ProcessShader
>     [  4%] Built target vtkMaterialLibraryConfiguredFiles
>     [  5%] Built target vtkproj4
>     [  5%] Built target lproj
>     [  5%] Building CXX object
>     VTK/Utilities/mrmpi/src/CMakeFiles/MapReduceMPI.dir/mapreduce.cpp.o
>     /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/mapreduce.cpp:14:17:
>     error:
>     mpi.h: No such file or directory
>     In file included from
>     /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/mapreduce.cpp:22:
>     /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/mapreduce.h:38:
>     error: field ‘MPI_Comm’ has incomplete type
>     /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/mapreduce.h:81:
>     error: ‘MPI_Comm’ does not name a type
>     /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/mapreduce.h:93:
>     error: ‘MPI_Comm’ does not name a type
>     In file included from
>     /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/mapreduce.cpp:23:
>     /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/keyvalue.h:36:
>     error: field ‘MPI_Comm’ has incomplete type
> 
>     The relevant CMAKE MPI variables seem to be set correctly:
> 
>     opti at optihd0:~/c/paraview-3101-release$ grep ^MPI_ CMakeCache.txt
>     MPI_COMPILER:FILEPATH=/usr/bin/mpic++
>     MPI_COMPILE_FLAGS:STRING=
>     MPI_EXTRA_LIBRARY:STRING=/usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libopen-rte.so;/usr/lib/openmpi/lib/libopen-pal.so;/usr/lib/libdl.so;/usr/lib/libnsl.so;/usr/lib/libutil.so;/usr/lib/libm.so;/usr/lib/libdl.so
>     MPI_INCLUDE_PATH:STRING=/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi
>     MPI_LIBRARY:FILEPATH=/usr/lib/openmpi/lib/libmpi_cxx.so
>     MPI_LINK_FLAGS:STRING=-Wl,--export-dynamic
>     MPI_COMPILER-ADVANCED:INTERNAL=1
>     MPI_COMPILE_FLAGS-ADVANCED:INTERNAL=1
>     MPI_EXTRA_LIBRARY-ADVANCED:INTERNAL=0
>     MPI_INCLUDE_PATH-ADVANCED:INTERNAL=0
>     MPI_LIB:INTERNAL=MPI_LIB-NOTFOUND
>     MPI_LIBRARY-ADVANCED:INTERNAL=0
>     MPI_LINK_FLAGS-ADVANCED:INTERNAL=1
>     opti at optihd0:~/c/paraview-3101-release$ find /usr/lib -name mpi.h
>     /usr/lib/openmpi/include/mpi.h
> 
>     The MPI related cache variables seem to be almost the same between 3.8
>     and 3.10, and in the differences I see nothing related to missing
>     include paths or something like that:
> 
>     opti at optihd0:~/c/paraview-3101-release$ grep MPI_ CMakeCache.txt >
>     mpi310.txt
>     opti at optihd0:~/c/paraview-3101-release$ grep MPI_
>     ../paraview-381-release/CMakeCache.txt > mpi38.txt
>     opti at optihd0:~/c/paraview-3101-release$ diff -u mpi38.txt mpi310.txt
>     --- mpi38.txt   2011-08-05 14:13:28.781521205 +0200
>     +++ mpi310.txt  2011-08-05 14:13:24.305022071 +0200
>     @@ -1,3 +1,4 @@
>     +IceTMPI_LIB_DEPENDS:STATIC=general;m;general;IceTCore;general;/usr/lib/openmpi/lib/libmpi_cxx.so;general;/usr/lib/openmpi/lib/libmpi.so;general;/usr/lib/openmpi/lib/libopen-rte.so;general;/usr/lib/openmpi/lib/libopen-pal.so;general;/usr/lib/libdl.so;general;/usr/lib/libnsl.so;general;/usr/lib/libutil.so;general;/usr/lib/libm.so;general;/usr/lib/libdl.so;
>      MPI_COMPILER:FILEPATH=/usr/bin/mpic++
>      MPI_COMPILE_FLAGS:STRING=
>      MPI_EXTRA_LIBRARY:STRING=/usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libopen-rte.so;/usr/lib/openmpi/lib/libopen-pal.so;/usr/lib/libdl.so;/usr/lib/libnsl.so;/usr/lib/libutil.so;/usr/lib/libm.so;/usr/lib/libdl.so
>     @@ -15,12 +16,8 @@
>      ICET_MPI_MAX_NUMPROCS-ADVANCED:INTERNAL=1
>      //This is set from VTK_MPI_MAX_NUMPROCS.
>      ICET_MPI_MAX_NUMPROCS:INTERNAL=2
>     -//ADVANCED property for variable: ICET_MPI_POSTFLAGS
>     -ICET_MPI_POSTFLAGS-ADVANCED:INTERNAL=1
>      //This is set from VTK_MPI_POSTFLAGS.
>      ICET_MPI_POSTFLAGS:INTERNAL=
>     -//ADVANCED property for variable: ICET_MPI_PREFLAGS
>     -ICET_MPI_PREFLAGS-ADVANCED:INTERNAL=1
>      //This is set from a combination of VTK_MPI_PREFLAGS
>     VTK_MPI_NUMPROC_FLAG
>      // VTK_MPI_MAX_NUMPROCS VTK_MPI_PREFLAGS.
>      ICET_MPI_PREFLAGS:INTERNAL=;-np;2;
> 
>     Any clues?
> 
>     Regards,
>     Paul
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