[Paraview] PV 3.10.1 - compile error w.r.t. MapReduceMPI
Paul Melis
paul.melis at sara.nl
Fri Aug 5 10:47:54 EDT 2011
Hi David,
On 08/05/2011 02:55 PM, David Partyka wrote:
> Have you turned MPI On then Off and then back On again? I've seen it get
> confused when this happens.
Tried that, doesn't help, unfortunately
> Can you try a fresh (delete your build tree)
> build of 3.10.1 and turn everything on at once?
A fresh build in a clean build directory (together with the cmake line
below) doesn't solve the problem. Note that I'm not setting the openmpi
header/library locations directly, but let CMake detect them. I assume
that's not a problem?
Regards,
Paul
>
> On Fri, Aug 5, 2011 at 8:15 AM, Paul Melis <paul.melis at sara.nl
> <mailto:paul.melis at sara.nl>> wrote:
>
> Hi,
>
> I'm building PV 3.8.1 and PV 3.10.1 on exactly the same Debian 6.0
> system (64-bit) system using the exact same CMAKE configuration lines:
>
> #!/bin/sh
> cmake \
> -DCMAKE_BUILD_TYPE=Release \
> -DMANTA_BUILD=$HOME/c/manta-2439-build \
> -DMANTA_SOURCE=$HOME/c/manta-2439 \
> -DPARAVIEW_BUILD_PLUGIN_Manta=ON \
> -DPARAVIEW_ENABLE_PYTHON=ON \
> -DPARAVIEW_USE_MPI=ON \
> <source-dir>
>
> The 3.8.1 build succeeds, but the 3.10.1 buid fails because mpi.h is not
> being found:
>
> [ 4%] Built target ProcessShader
> [ 4%] Built target vtkMaterialLibraryConfiguredFiles
> [ 5%] Built target vtkproj4
> [ 5%] Built target lproj
> [ 5%] Building CXX object
> VTK/Utilities/mrmpi/src/CMakeFiles/MapReduceMPI.dir/mapreduce.cpp.o
> /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/mapreduce.cpp:14:17:
> error:
> mpi.h: No such file or directory
> In file included from
> /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/mapreduce.cpp:22:
> /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/mapreduce.h:38:
> error: field ‘MPI_Comm’ has incomplete type
> /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/mapreduce.h:81:
> error: ‘MPI_Comm’ does not name a type
> /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/mapreduce.h:93:
> error: ‘MPI_Comm’ does not name a type
> In file included from
> /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/mapreduce.cpp:23:
> /home/opti/c/ParaView-3.10.1/VTK/Utilities/mrmpi/src/keyvalue.h:36:
> error: field ‘MPI_Comm’ has incomplete type
>
> The relevant CMAKE MPI variables seem to be set correctly:
>
> opti at optihd0:~/c/paraview-3101-release$ grep ^MPI_ CMakeCache.txt
> MPI_COMPILER:FILEPATH=/usr/bin/mpic++
> MPI_COMPILE_FLAGS:STRING=
> MPI_EXTRA_LIBRARY:STRING=/usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libopen-rte.so;/usr/lib/openmpi/lib/libopen-pal.so;/usr/lib/libdl.so;/usr/lib/libnsl.so;/usr/lib/libutil.so;/usr/lib/libm.so;/usr/lib/libdl.so
> MPI_INCLUDE_PATH:STRING=/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi
> MPI_LIBRARY:FILEPATH=/usr/lib/openmpi/lib/libmpi_cxx.so
> MPI_LINK_FLAGS:STRING=-Wl,--export-dynamic
> MPI_COMPILER-ADVANCED:INTERNAL=1
> MPI_COMPILE_FLAGS-ADVANCED:INTERNAL=1
> MPI_EXTRA_LIBRARY-ADVANCED:INTERNAL=0
> MPI_INCLUDE_PATH-ADVANCED:INTERNAL=0
> MPI_LIB:INTERNAL=MPI_LIB-NOTFOUND
> MPI_LIBRARY-ADVANCED:INTERNAL=0
> MPI_LINK_FLAGS-ADVANCED:INTERNAL=1
> opti at optihd0:~/c/paraview-3101-release$ find /usr/lib -name mpi.h
> /usr/lib/openmpi/include/mpi.h
>
> The MPI related cache variables seem to be almost the same between 3.8
> and 3.10, and in the differences I see nothing related to missing
> include paths or something like that:
>
> opti at optihd0:~/c/paraview-3101-release$ grep MPI_ CMakeCache.txt >
> mpi310.txt
> opti at optihd0:~/c/paraview-3101-release$ grep MPI_
> ../paraview-381-release/CMakeCache.txt > mpi38.txt
> opti at optihd0:~/c/paraview-3101-release$ diff -u mpi38.txt mpi310.txt
> --- mpi38.txt 2011-08-05 14:13:28.781521205 +0200
> +++ mpi310.txt 2011-08-05 14:13:24.305022071 +0200
> @@ -1,3 +1,4 @@
> +IceTMPI_LIB_DEPENDS:STATIC=general;m;general;IceTCore;general;/usr/lib/openmpi/lib/libmpi_cxx.so;general;/usr/lib/openmpi/lib/libmpi.so;general;/usr/lib/openmpi/lib/libopen-rte.so;general;/usr/lib/openmpi/lib/libopen-pal.so;general;/usr/lib/libdl.so;general;/usr/lib/libnsl.so;general;/usr/lib/libutil.so;general;/usr/lib/libm.so;general;/usr/lib/libdl.so;
> MPI_COMPILER:FILEPATH=/usr/bin/mpic++
> MPI_COMPILE_FLAGS:STRING=
> MPI_EXTRA_LIBRARY:STRING=/usr/lib/openmpi/lib/libmpi.so;/usr/lib/openmpi/lib/libopen-rte.so;/usr/lib/openmpi/lib/libopen-pal.so;/usr/lib/libdl.so;/usr/lib/libnsl.so;/usr/lib/libutil.so;/usr/lib/libm.so;/usr/lib/libdl.so
> @@ -15,12 +16,8 @@
> ICET_MPI_MAX_NUMPROCS-ADVANCED:INTERNAL=1
> //This is set from VTK_MPI_MAX_NUMPROCS.
> ICET_MPI_MAX_NUMPROCS:INTERNAL=2
> -//ADVANCED property for variable: ICET_MPI_POSTFLAGS
> -ICET_MPI_POSTFLAGS-ADVANCED:INTERNAL=1
> //This is set from VTK_MPI_POSTFLAGS.
> ICET_MPI_POSTFLAGS:INTERNAL=
> -//ADVANCED property for variable: ICET_MPI_PREFLAGS
> -ICET_MPI_PREFLAGS-ADVANCED:INTERNAL=1
> //This is set from a combination of VTK_MPI_PREFLAGS
> VTK_MPI_NUMPROC_FLAG
> // VTK_MPI_MAX_NUMPROCS VTK_MPI_PREFLAGS.
> ICET_MPI_PREFLAGS:INTERNAL=;-np;2;
>
> Any clues?
>
> Regards,
> Paul
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