[Paraview] Still more trouble compiling VisitBridge with Paraview 3.10 on RHEL 5

Mon Apr 11 14:08:54 EDT 2011

Rich,

Dave just reminded me that you're doing a static build, I missed that.
In that case you will no have the "wrapper" executable I was referring
to and "shared forwarding" does not apply.
Out of curiosity, what libraries are you linking in shared with this
static build?

Utkarsh

On Mon, Apr 11, 2011 at 1:57 PM, Utkarsh Ayachit
<utkarsh.ayachit at kitware.com> wrote:
> I was hoping someone was going respond about the rpath stripping, but
> alas I suppose I'll have to :).
>
> rpaths are stripped to ensure that installed executable don't depend
> on anything that is not installed. To circumvent the LD_LIBRARY_PATH
> issues, Paraview uses what we call "shared-forwarding". The paraview
> executable that gets installed in "bin" directory is not the real
> paraview executable instead it's a wrapper executable that sets up the
> environment variables and the forks the real paraview executable
> (which is trypically under lib/paraview-version/...).
>
> So to diagnose the missing path, run the installed paraview with
> "--ldd" command line argument. What are the missing libraries and
> where are they located?
>
> Utkarsh
>
> On Mon, Apr 11, 2011 at 1:40 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>> I also forgot to include the fact that IMO the installer stripping the rpath out of binaries without any way to prevent this breaks my install and is in my opinion a bug :-)  I have to install them by just copying them by hand.
>> -- Rich
>>
>> On Apr 11, 2011, at 10:37 AM, Cook, Rich wrote:
>>
>>> Hi, thanks for replying.
>>> I don't know what went wrong.  One thing is that paraview wants to
>>> When I launch paraview, and then choose File->Open, then click on the "Files of Type" pull down menu in the File Open dialog, I see some Visit plugins, such as my ParaDIS reader, so I think some of the VisitBridge is "working" but I do not see a "Mili" file type option.  Also the user who requested it is not able to open his mili files yet.
>>> Not sure what to check or how to proceed.  Thanks for any help!
>>> -- Rich
>>>
>>> On Apr 11, 2011, at 5:28 AM, Robert Maynard wrote:
>>>
>>>> Hi Rich,
>>>>
>>>> Can you give me some more information on what went wrong on install
>>>> time. I can spend some time this week making sure that static install
>>>> work properly.
>>>>
>>>> On Fri, Apr 8, 2011 at 7:14 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>>>> Sorry to speak up again.  I got MILI to compile but I think it did not install correctly.  Am I SOL for now?  The Mili support was the whole point of my trying to get this to work.  :-)
>>>>> Thanks for all the support
>>>>> -- Rich
>>>>>
>>>>> On Apr 8, 2011, at 12:06 PM, Robert Maynard wrote:
>>>>>
>>>>>> Hi Rich,
>>>>>>
>>>>>> I am currently working on fixing the issues with the MILI reader not
>>>>>> compiling correctly.
>>>>>>
>>>>>> On Fri, Apr 8, 2011 at 1:15 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>>>>>> Aha, it's the semicolon syntax that was unknown to me.  Thanks.
>>>>>>> I do want to reiterate that turning on the MILI reader did not result in a
>>>>>>> successful reader build, because the include and library settings do not get
>>>>>>> placed in the right makefiles.  I have to manually hack the link.txt and
>>>>>>> make.flags files or otherwise do workarounds for that.  As long as I'm doing
>>>>>>> that anyhow, I can just place the deeper dependencies there as well.
>>>>>>> On Apr 8, 2011, at 6:26 AM, David Partyka wrote:
>>>>>>>
>>>>>>> Hi Rich,
>>>>>>> Because you're building static you need to tell CMake what your
>>>>>>> Silo/Mili/HDF5 dependencies are because it has no way of knowing. To do
>>>>>>> this, in ccmake/cmake-gui you can list them in the same variables where you
>>>>>>> specified SILO_LIBRARY,MILI_LIBRARY, HDF5_LIBRARY/HDF5_LIBRARIES. This
>>>>>>> should give CMake enough information to compute the correct link line.
>>>>>>> For example, you should be able to set these in ccmake/cmake-gui like so:
>>>>>>> SILO_LIBRARY /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a;/usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a
>>>>>>> On Thu, Apr 7, 2011 at 7:19 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>>>>>>>
>>>>>>>> OK, I just solved this by hacking into all the link.txt files I found
>>>>>>>> laying around.  This has been one ugly build process!
>>>>>>>> -- Rich
>>>>>>>>
>>>>>>>> On Apr 7, 2011, at 4:00 PM, Cook, Rich wrote:
>>>>>>>>
>>>>>>>>> So, our libmili.a, libsiloh5.a and libhdf5.a libraries have dependencies
>>>>>>>>> on another library, libsz.  I've tried adding  -lz
>>>>>>>>> /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a  to every STRING
>>>>>>>>> I can in the CMakeCache.txt file, but I'm stuck on this error.  How can I
>>>>>>>>> append linker flags to what cmake is doing here?  You can see that the -lz
>>>>>>>>> and libsz.a are being inserted here, but it needs to come at the end of the
>>>>>>>>> link line to resolve the symbols.  I might resort to sed and grep if this
>>>>>>>>> keeps up, but I hope I don't have to.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Linking CXX executable ../../../../bin/ServerManagerStateLoader
>>>>>>>>> cd
>>>>>>>>> /nfs/tmp2/rcook/Paraview/3.10/build/ParaView-3.10.0/build/Servers/ServerManager/Testing/Cxx
>>>>>>>>> && /usr/gapps/visit/cmake/2.8.3/linux-x86_64_gcc-4.1/bin/cmake -E
>>>>>>>>> cmake_link_script CMakeFiles/ServerManagerStateLoader.dir/link.txt
>>>>>>>>> --verbose=1
>>>>>>>>> /usr/local/bin/g++
>>>>>>>>> -I/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/include
>>>>>>>>> -I/usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/include
>>>>>>>>> -Wno-deprecated -g
>>>>>>>>> -L/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib
>>>>>>>>> -L/usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/lib -lmili
>>>>>>>>> /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a -lz
>>>>>>>>> /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a
>>>>>>>>> CMakeFiles/ServerManagerStateLoader.dir/ServerManagerStateLoader.cxx.o
>>>>>>>>> CMakeFiles/ServerManagerStateLoader.dir/vtkTestingProcessModuleGUIHelper.cxx.o
>>>>>>>>> CMakeFiles/ServerManagerStateLoader.dir/vtkTestingOptions.cxx.o  -o
>>>>>>>>> ../../../../bin/ServerManagerStateLoader -rdynamic
>>>>>>>>> ../../../../bin/libvtkPVServerManager.a ../../../../bin/libvtkPVFiltersCS.a
>>>>>>>>> ../../../../bin/libvtkPVFilters.a ../../../../bin/libvtkPVServerCommonCS.a
>>>>>>>>> ../../../../bin/libvtkPVServerCommon.a
>>>>>>>>> ../../../../bin/libvtkPVCommandOptions.a ../../../../bin/libvtkChartsCS.a
>>>>>>>>> ../../../../bin/libvtkViewsCS.a ../../../../bin/libvtkInfovisCS.a
>>>>>>>>> ../../../../bin/libQVTK.a
>>>>>>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtWebKit.so
>>>>>>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtXmlPatterns.so
>>>>>>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtNetwork.so
>>>>>>>>> ../../../../bin/libIceTMPI.a ../../../../bin/libIceTGL.a
>>>>>>>>> ../../../../bin/libIceTCore.a -lGLU
>>>>>>>>> ../../../../bin/libvtkVolumeRenderingCS.a
>>>>>>>>> ../../../../bin/libvtkVolumeRendering.a ../../../../bin/libvtkWidgetsCS.a
>>>>>>>>> ../../../../bin/libKWCommon.a ../../../../bin/libvtkCharts.a
>>>>>>>>> ../../../../bin/libvtkViews.a ../../../../bin/libvtkInfovis.a
>>>>>>>>> ../../../../bin/libvtkWidgets.a ../../../../bin/libvtkalglib.a
>>>>>>>>> ../../../../bin/libvtkXdmfCS.a ../../../../bin/libvtkXdmf.a
>>>>>>>>> ../../../../bin/libXdmf.a ../../../../bin/libvtklibxml2.a -lm
>>>>>>>>> ../../../../bin/libvtkVisItDatabasesCS.a
>>>>>>>>> ../../../../bin/libvtkVisItAVTAlgorithmsCS.a
>>>>>>>>> ../../../../bin/libvtkHybridCS.a ../../../../bin/libvtkParallelCS.a
>>>>>>>>> ../../../../bin/libvtkHybrid.a ../../../../bin/libvtkParallel.a
>>>>>>>>> ../../../../bin/libVPIC.a ../../../../bin/libCosmo.a
>>>>>>>>> /usr/local/tools/mvapich-gnu/lib/shared/libmpich.so
>>>>>>>>> ../../../../bin/libvtkexoIIc.a ../../../../bin/libvtkRenderingCS.a
>>>>>>>>> ../../../../bin/libvtkRendering.a ../../../../bin/libvtkftgl.a
>>>>>>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtGui.so
>>>>>>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtSql.so
>>>>>>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtCore.so
>>>>>>>>> -lGL ../../../../bin/libvtkfreetype.a -lXt -lSM -lICE -lX11 -lXext
>>>>>>>>> ../../../../bin/libvtkGenericFilteringCS.a
>>>>>>>>> ../../../../bin/libvtkGenericFiltering.a ../../../../bin/libvtkGraphicsCS.a
>>>>>>>>> ../../../../bin/libvtkImagingCS.a ../../../../bin/libvtkIOCS.a
>>>>>>>>> ../../../../bin/libvtkFilteringCS.a ../../../../bin/libvtkCommonCS.a
>>>>>>>>> ../../../../bin/libvtkClientServer.a ../../../../bin/libvtkVisItDatabases.a
>>>>>>>>> ../../../../bin/libvtkVisItAVTAlgorithms.a
>>>>>>>>> ../../../../bin/libavtdatabase_par.a ../../../../bin/libavtpipeline_par.a
>>>>>>>>> ../../../../bin/libavtdbatts.a ../../../../bin/libavtivp.a
>>>>>>>>> ../../../../bin/libvisit_vtk.a ../../../../bin/libvtkGraphics.a
>>>>>>>>> ../../../../bin/libvtkverdict.a ../../../../bin/libvtkImaging.a
>>>>>>>>> ../../../../bin/liblightweight_visit_vtk.a ../../../../bin/libvtkIO.a
>>>>>>>>> ../../../../bin/libvtkDICOMParser.a ../../../../bin/libvtkNetCDF_cxx.a
>>>>>>>>> ../../../../bin/libvtkmetaio.a ../../../../bin/libvtksqlite.a
>>>>>>>>> ../../../../bin/libvtkpng.a ../../../../bin/libvtktiff.a
>>>>>>>>> ../../../../bin/libvtkzlib.a ../../../../bin/libvtkjpeg.a
>>>>>>>>> ../../../../bin/libvtkexpat.a ../../../../bin/libvtkFiltering.a
>>>>>>>>> ../../../../bin/libavtmath.a ../../../../bin/libvtkCommon.a
>>>>>>>>> ../../../../bin/libvtksys.a -lm -lpthread -lz
>>>>>>>>> /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a -ldl
>>>>>>>>> ../../../../bin/libvisitcommon.a ../../../../bin/libvtkNetCDF.a
>>>>>>>>> /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a
>>>>>>>>> /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a
>>>>>>>>> /usr/gapps/visit/cgns/3.0.8/linux-x86_64_gcc-4.1/lib/libcgns.a
>>>>>>>>> /usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/lib/libmili.a
>>>>>>>>> -Wl,-rpath,/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib:/usr/local/tools/mvapich-gnu/lib/shared
>>>>>>>>> /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a(H5Z.o):
>>>>>>>>> In function `H5Z_init_interface':
>>>>>>>>> H5Z.c:(.text+0x27d): undefined reference to `SZ_encoder_enabled'
>>>>>>>>>
>>>>>>>>> /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a(H5Zszip.o):
>>>>>>>>> In function `H5Z_filter_szip':
>>>>>>>>> H5Zszip.c:(.text+0x121): undefined reference to
>>>>>>>>> `SZ_BufftoBuffDecompress'
>>>>>>>>> H5Zszip.c:(.text+0x1ce): undefined reference to `SZ_BufftoBuffCompress'
>>>>>>>>>
>>>>>>>>> /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a(silo_hdf5.o):
>>>>>>>>> In function `db_hdf5_InqMeshName':
>>>>>>>>> silo_hdf5.c:(.text+0x839e): undefined reference to `H5Topen1'
>>>>>>>>>
>>>>>>>>> /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a(silo_hdf5.o):
>>>>>>>>> In function `db_hdf5_hdrwr':
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> ✐Richard Cook
>>>>>>>>> ✇ Lawrence Livermore National Laboratory
>>>>>>>>> Bldg-453 Rm-4024, Mail Stop L-557
>>>>>>>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>>>>>>>> ☎ (office) (925) 423-9605
>>>>>>>>> ☎ (fax) (925) 423-6961
>>>>>>>>> ---
>>>>>>>>> Information Management & Graphics Grp., Services & Development Div.,
>>>>>>>>> Integrated Computing & Communications Dept.
>>>>>>>>> (opinions expressed herein are mine and not those of LLNL)
>>>>>>>>>
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> Powered by www.kitware.com
>>>>>>>>>
>>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>>
>>>>>>>>> Please keep messages on-topic and check the ParaView Wiki at:
>>>>>>>>> http://paraview.org/Wiki/ParaView
>>>>>>>>>
>>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>>> http://www.paraview.org/mailman/listinfo/paraview
>>>>>>>>
>>>>>>>> --
>>>>>>>> ✐Richard Cook
>>>>>>>> ✇ Lawrence Livermore National Laboratory
>>>>>>>> Bldg-453 Rm-4024, Mail Stop L-557
>>>>>>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>>>>>>> ☎ (office) (925) 423-9605
>>>>>>>> ☎ (fax) (925) 423-6961
>>>>>>>> ---
>>>>>>>> Information Management & Graphics Grp., Services & Development Div.,
>>>>>>>> Integrated Computing & Communications Dept.
>>>>>>>> (opinions expressed herein are mine and not those of LLNL)
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> _______________________________________________
>>>>>>>> Powered by www.kitware.com
>>>>>>>>
>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>
>>>>>>>> Please keep messages on-topic and check the ParaView Wiki at:
>>>>>>>> http://paraview.org/Wiki/ParaView
>>>>>>>>
>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>> http://www.paraview.org/mailman/listinfo/paraview
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> ✐Richard Cook
>>>>>>> ✇ Lawrence Livermore National Laboratory
>>>>>>> Bldg-453 Rm-4024, Mail Stop L-557
>>>>>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>>>>>> ☎ (office) (925) 423-9605
>>>>>>> ☎ (fax) (925) 423-6961
>>>>>>> ---
>>>>>>> Information Management & Graphics Grp., Services & Development Div.,
>>>>>>> Integrated Computing & Communications Dept.
>>>>>>> (opinions expressed herein are mine and not those of LLNL)
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Powered by www.kitware.com
>>>>>>>
>>>>>>> Visit other Kitware open-source projects at
>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>
>>>>>>> Please keep messages on-topic and check the ParaView Wiki at:
>>>>>>> http://paraview.org/Wiki/ParaView
>>>>>>>
>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>> http://www.paraview.org/mailman/listinfo/paraview
>>>>>>>
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Robert Maynard
>>>>>
>>>>> --
>>>>> ✐Richard Cook
>>>>> ✇ Lawrence Livermore National Laboratory
>>>>> Bldg-453 Rm-4024, Mail Stop L-557
>>>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>>>> ☎ (office) (925) 423-9605
>>>>> ☎ (fax) (925) 423-6961
>>>>> ---
>>>>> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
>>>>> (opinions expressed herein are mine and not those of LLNL)
>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Robert Maynard
>>>
>>> --
>>> ✐Richard Cook
>>> ✇ Lawrence Livermore National Laboratory
>>> Bldg-453 Rm-4024, Mail Stop L-557
>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>> ☎ (office) (925) 423-9605
>>> ☎ (fax) (925) 423-6961
>>> ---
>>> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
>>> (opinions expressed herein are mine and not those of LLNL)
>>>
>>>
>>>
>>
>> --
>> ✐Richard Cook
>> ✇ Lawrence Livermore National Laboratory
>> Bldg-453 Rm-4024, Mail Stop L-557
>> 7000 East Avenue,  Livermore, CA, 94550, USA
>> ☎ (office) (925) 423-9605
>> ☎ (fax) (925) 423-6961
>> ---
>> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
>> (opinions expressed herein are mine and not those of LLNL)
>>
>>
>>
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html
>>
>> Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView
>>
>> Follow this link to subscribe/unsubscribe:
>> http://www.paraview.org/mailman/listinfo/paraview
>>
>