[Paraview] Still more trouble compiling VisitBridge with Paraview 3.10 on RHEL 5

Cook, Rich cook47 at llnl.gov
Mon Apr 11 13:37:27 EDT 2011 

Hi, thanks for replying. 
I don't know what went wrong.  One thing is that paraview wants to 
When I launch paraview, and then choose File->Open, then click on the "Files of Type" pull down menu in the File Open dialog, I see some Visit plugins, such as my ParaDIS reader, so I think some of the VisitBridge is "working" but I do not see a "Mili" file type option.  Also the user who requested it is not able to open his mili files yet.  
Not sure what to check or how to proceed.  Thanks for any help!
-- Rich 

On Apr 11, 2011, at 5:28 AM, Robert Maynard wrote:

> Hi Rich,
> 
> Can you give me some more information on what went wrong on install
> time. I can spend some time this week making sure that static install
> work properly.
> 
> On Fri, Apr 8, 2011 at 7:14 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>> Sorry to speak up again.  I got MILI to compile but I think it did not install correctly.  Am I SOL for now?  The Mili support was the whole point of my trying to get this to work.  :-)
>> Thanks for all the support
>> -- Rich
>> 
>> On Apr 8, 2011, at 12:06 PM, Robert Maynard wrote:
>> 
>>> Hi Rich,
>>> 
>>> I am currently working on fixing the issues with the MILI reader not
>>> compiling correctly.
>>> 
>>> On Fri, Apr 8, 2011 at 1:15 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>>> Aha, it's the semicolon syntax that was unknown to me.  Thanks.
>>>> I do want to reiterate that turning on the MILI reader did not result in a
>>>> successful reader build, because the include and library settings do not get
>>>> placed in the right makefiles.  I have to manually hack the link.txt and
>>>> make.flags files or otherwise do workarounds for that.  As long as I'm doing
>>>> that anyhow, I can just place the deeper dependencies there as well.
>>>> On Apr 8, 2011, at 6:26 AM, David Partyka wrote:
>>>> 
>>>> Hi Rich,
>>>> Because you're building static you need to tell CMake what your
>>>> Silo/Mili/HDF5 dependencies are because it has no way of knowing. To do
>>>> this, in ccmake/cmake-gui you can list them in the same variables where you
>>>> specified SILO_LIBRARY,MILI_LIBRARY, HDF5_LIBRARY/HDF5_LIBRARIES. This
>>>> should give CMake enough information to compute the correct link line.
>>>> For example, you should be able to set these in ccmake/cmake-gui like so:
>>>> SILO_LIBRARY /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a;/usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a
>>>> On Thu, Apr 7, 2011 at 7:19 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>>>> 
>>>>> OK, I just solved this by hacking into all the link.txt files I found
>>>>> laying around.  This has been one ugly build process!
>>>>> -- Rich
>>>>> 
>>>>> On Apr 7, 2011, at 4:00 PM, Cook, Rich wrote:
>>>>> 
>>>>>> So, our libmili.a, libsiloh5.a and libhdf5.a libraries have dependencies
>>>>>> on another library, libsz.  I've tried adding  -lz
>>>>>>  /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a  to every STRING
>>>>>> I can in the CMakeCache.txt file, but I'm stuck on this error.  How can I
>>>>>> append linker flags to what cmake is doing here?  You can see that the -lz
>>>>>> and libsz.a are being inserted here, but it needs to come at the end of the
>>>>>> link line to resolve the symbols.  I might resort to sed and grep if this
>>>>>> keeps up, but I hope I don't have to.
>>>>>> 
>>>>>> 
>>>>>> Linking CXX executable ../../../../bin/ServerManagerStateLoader
>>>>>> cd
>>>>>> /nfs/tmp2/rcook/Paraview/3.10/build/ParaView-3.10.0/build/Servers/ServerManager/Testing/Cxx
>>>>>> && /usr/gapps/visit/cmake/2.8.3/linux-x86_64_gcc-4.1/bin/cmake -E
>>>>>> cmake_link_script CMakeFiles/ServerManagerStateLoader.dir/link.txt
>>>>>> --verbose=1
>>>>>> /usr/local/bin/g++
>>>>>>  -I/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/include
>>>>>>  -I/usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/include
>>>>>>  -Wno-deprecated -g
>>>>>> -L/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib
>>>>>> -L/usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/lib -lmili
>>>>>>  /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a -lz
>>>>>> /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a
>>>>>> CMakeFiles/ServerManagerStateLoader.dir/ServerManagerStateLoader.cxx.o
>>>>>> CMakeFiles/ServerManagerStateLoader.dir/vtkTestingProcessModuleGUIHelper.cxx.o
>>>>>> CMakeFiles/ServerManagerStateLoader.dir/vtkTestingOptions.cxx.o  -o
>>>>>> ../../../../bin/ServerManagerStateLoader -rdynamic
>>>>>> ../../../../bin/libvtkPVServerManager.a ../../../../bin/libvtkPVFiltersCS.a
>>>>>> ../../../../bin/libvtkPVFilters.a ../../../../bin/libvtkPVServerCommonCS.a
>>>>>> ../../../../bin/libvtkPVServerCommon.a
>>>>>> ../../../../bin/libvtkPVCommandOptions.a ../../../../bin/libvtkChartsCS.a
>>>>>> ../../../../bin/libvtkViewsCS.a ../../../../bin/libvtkInfovisCS.a
>>>>>> ../../../../bin/libQVTK.a
>>>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtWebKit.so
>>>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtXmlPatterns.so
>>>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtNetwork.so
>>>>>> ../../../../bin/libIceTMPI.a ../../../../bin/libIceTGL.a
>>>>>> ../../../../bin/libIceTCore.a -lGLU
>>>>>> ../../../../bin/libvtkVolumeRenderingCS.a
>>>>>> ../../../../bin/libvtkVolumeRendering.a ../../../../bin/libvtkWidgetsCS.a
>>>>>> ../../../../bin/libKWCommon.a ../../../../bin/libvtkCharts.a
>>>>>> ../../../../bin/libvtkViews.a ../../../../bin/libvtkInfovis.a
>>>>>> ../../../../bin/libvtkWidgets.a ../../../../bin/libvtkalglib.a
>>>>>> ../../../../bin/libvtkXdmfCS.a ../../../../bin/libvtkXdmf.a
>>>>>> ../../../../bin/libXdmf.a ../../../../bin/libvtklibxml2.a -lm
>>>>>> ../../../../bin/libvtkVisItDatabasesCS.a
>>>>>> ../../../../bin/libvtkVisItAVTAlgorithmsCS.a
>>>>>> ../../../../bin/libvtkHybridCS.a ../../../../bin/libvtkParallelCS.a
>>>>>> ../../../../bin/libvtkHybrid.a ../../../../bin/libvtkParallel.a
>>>>>> ../../../../bin/libVPIC.a ../../../../bin/libCosmo.a
>>>>>> /usr/local/tools/mvapich-gnu/lib/shared/libmpich.so
>>>>>> ../../../../bin/libvtkexoIIc.a ../../../../bin/libvtkRenderingCS.a
>>>>>> ../../../../bin/libvtkRendering.a ../../../../bin/libvtkftgl.a
>>>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtGui.so
>>>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtSql.so
>>>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtCore.so
>>>>>> -lGL ../../../../bin/libvtkfreetype.a -lXt -lSM -lICE -lX11 -lXext
>>>>>> ../../../../bin/libvtkGenericFilteringCS.a
>>>>>> ../../../../bin/libvtkGenericFiltering.a ../../../../bin/libvtkGraphicsCS.a
>>>>>> ../../../../bin/libvtkImagingCS.a ../../../../bin/libvtkIOCS.a
>>>>>> ../../../../bin/libvtkFilteringCS.a ../../../../bin/libvtkCommonCS.a
>>>>>> ../../../../bin/libvtkClientServer.a ../../../../bin/libvtkVisItDatabases.a
>>>>>> ../../../../bin/libvtkVisItAVTAlgorithms.a
>>>>>> ../../../../bin/libavtdatabase_par.a ../../../../bin/libavtpipeline_par.a
>>>>>> ../../../../bin/libavtdbatts.a ../../../../bin/libavtivp.a
>>>>>> ../../../../bin/libvisit_vtk.a ../../../../bin/libvtkGraphics.a
>>>>>> ../../../../bin/libvtkverdict.a ../../../../bin/libvtkImaging.a
>>>>>> ../../../../bin/liblightweight_visit_vtk.a ../../../../bin/libvtkIO.a
>>>>>> ../../../../bin/libvtkDICOMParser.a ../../../../bin/libvtkNetCDF_cxx.a
>>>>>> ../../../../bin/libvtkmetaio.a ../../../../bin/libvtksqlite.a
>>>>>> ../../../../bin/libvtkpng.a ../../../../bin/libvtktiff.a
>>>>>> ../../../../bin/libvtkzlib.a ../../../../bin/libvtkjpeg.a
>>>>>> ../../../../bin/libvtkexpat.a ../../../../bin/libvtkFiltering.a
>>>>>> ../../../../bin/libavtmath.a ../../../../bin/libvtkCommon.a
>>>>>> ../../../../bin/libvtksys.a -lm -lpthread -lz
>>>>>>  /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a -ldl
>>>>>> ../../../../bin/libvisitcommon.a ../../../../bin/libvtkNetCDF.a
>>>>>> /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a
>>>>>> /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a
>>>>>> /usr/gapps/visit/cgns/3.0.8/linux-x86_64_gcc-4.1/lib/libcgns.a
>>>>>> /usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/lib/libmili.a
>>>>>> -Wl,-rpath,/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib:/usr/local/tools/mvapich-gnu/lib/shared
>>>>>> /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a(H5Z.o):
>>>>>> In function `H5Z_init_interface':
>>>>>> H5Z.c:(.text+0x27d): undefined reference to `SZ_encoder_enabled'
>>>>>> 
>>>>>> /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a(H5Zszip.o):
>>>>>> In function `H5Z_filter_szip':
>>>>>> H5Zszip.c:(.text+0x121): undefined reference to
>>>>>> `SZ_BufftoBuffDecompress'
>>>>>> H5Zszip.c:(.text+0x1ce): undefined reference to `SZ_BufftoBuffCompress'
>>>>>> 
>>>>>> /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a(silo_hdf5.o):
>>>>>> In function `db_hdf5_InqMeshName':
>>>>>> silo_hdf5.c:(.text+0x839e): undefined reference to `H5Topen1'
>>>>>> 
>>>>>> /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a(silo_hdf5.o):
>>>>>> In function `db_hdf5_hdrwr':
>>>>>> 
>>>>>> --
>>>>>> ✐Richard Cook
>>>>>> ✇ Lawrence Livermore National Laboratory
>>>>>> Bldg-453 Rm-4024, Mail Stop L-557
>>>>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>>>>> ☎ (office) (925) 423-9605
>>>>>> ☎ (fax) (925) 423-6961
>>>>>> ---
>>>>>> Information Management & Graphics Grp., Services & Development Div.,
>>>>>> Integrated Computing & Communications Dept.
>>>>>> (opinions expressed herein are mine and not those of LLNL)
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> _______________________________________________
>>>>>> Powered by www.kitware.com
>>>>>> 
>>>>>> Visit other Kitware open-source projects at
>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>> 
>>>>>> Please keep messages on-topic and check the ParaView Wiki at:
>>>>>> http://paraview.org/Wiki/ParaView
>>>>>> 
>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>> http://www.paraview.org/mailman/listinfo/paraview
>>>>> 
>>>>> --
>>>>> ✐Richard Cook
>>>>> ✇ Lawrence Livermore National Laboratory
>>>>> Bldg-453 Rm-4024, Mail Stop L-557
>>>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>>>> ☎ (office) (925) 423-9605
>>>>> ☎ (fax) (925) 423-6961
>>>>> ---
>>>>> Information Management & Graphics Grp., Services & Development Div.,
>>>>> Integrated Computing & Communications Dept.
>>>>> (opinions expressed herein are mine and not those of LLNL)
>>>>> 
>>>>> 
>>>>> 
>>>>> _______________________________________________
>>>>> Powered by www.kitware.com
>>>>> 
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>> 
>>>>> Please keep messages on-topic and check the ParaView Wiki at:
>>>>> http://paraview.org/Wiki/ParaView
>>>>> 
>>>>> Follow this link to subscribe/unsubscribe:
>>>>> http://www.paraview.org/mailman/listinfo/paraview
>>>> 
>>>> 
>>>> --
>>>> ✐Richard Cook
>>>> ✇ Lawrence Livermore National Laboratory
>>>> Bldg-453 Rm-4024, Mail Stop L-557
>>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>>> ☎ (office) (925) 423-9605
>>>> ☎ (fax) (925) 423-6961
>>>> ---
>>>> Information Management & Graphics Grp., Services & Development Div.,
>>>> Integrated Computing & Communications Dept.
>>>> (opinions expressed herein are mine and not those of LLNL)
>>>> 
>>>> 
>>>> 
>>>> _______________________________________________
>>>> Powered by www.kitware.com
>>>> 
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>> 
>>>> Please keep messages on-topic and check the ParaView Wiki at:
>>>> http://paraview.org/Wiki/ParaView
>>>> 
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://www.paraview.org/mailman/listinfo/paraview
>>>> 
>>>> 
>>> 
>>> 
>>> 
>>> --
>>> Robert Maynard
>> 
>> --
>> ✐Richard Cook
>> ✇ Lawrence Livermore National Laboratory
>> Bldg-453 Rm-4024, Mail Stop L-557
>> 7000 East Avenue,  Livermore, CA, 94550, USA
>> ☎ (office) (925) 423-9605
>> ☎ (fax) (925) 423-6961
>> ---
>> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
>> (opinions expressed herein are mine and not those of LLNL)
>> 
>> 
>> 
>> 
> 
> 
> 
> -- 
> Robert Maynard

-- 
✐Richard Cook   
✇ Lawrence Livermore National Laboratory
Bldg-453 Rm-4024, Mail Stop L-557        
7000 East Avenue,  Livermore, CA, 94550, USA
☎ (office) (925) 423-9605    
☎ (fax) (925) 423-6961
---
Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
(opinions expressed herein are mine and not those of LLNL)

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