[Paraview] Still more trouble compiling VisitBridge with Paraview 3.10 on RHEL 5

Cook, Rich cook47 at llnl.gov
Fri Apr 8 19:14:08 EDT 2011 

Sorry to speak up again.  I got MILI to compile but I think it did not install correctly.  Am I SOL for now?  The Mili support was the whole point of my trying to get this to work.  :-) 
Thanks for all the support
-- Rich 

On Apr 8, 2011, at 12:06 PM, Robert Maynard wrote:

> Hi Rich,
> 
> I am currently working on fixing the issues with the MILI reader not
> compiling correctly.
> 
> On Fri, Apr 8, 2011 at 1:15 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>> Aha, it's the semicolon syntax that was unknown to me.  Thanks.
>> I do want to reiterate that turning on the MILI reader did not result in a
>> successful reader build, because the include and library settings do not get
>> placed in the right makefiles.  I have to manually hack the link.txt and
>> make.flags files or otherwise do workarounds for that.  As long as I'm doing
>> that anyhow, I can just place the deeper dependencies there as well.
>> On Apr 8, 2011, at 6:26 AM, David Partyka wrote:
>> 
>> Hi Rich,
>> Because you're building static you need to tell CMake what your
>> Silo/Mili/HDF5 dependencies are because it has no way of knowing. To do
>> this, in ccmake/cmake-gui you can list them in the same variables where you
>> specified SILO_LIBRARY,MILI_LIBRARY, HDF5_LIBRARY/HDF5_LIBRARIES. This
>> should give CMake enough information to compute the correct link line.
>> For example, you should be able to set these in ccmake/cmake-gui like so:
>> SILO_LIBRARY /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a;/usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a
>> On Thu, Apr 7, 2011 at 7:19 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>> 
>>> OK, I just solved this by hacking into all the link.txt files I found
>>> laying around.  This has been one ugly build process!
>>> -- Rich
>>> 
>>> On Apr 7, 2011, at 4:00 PM, Cook, Rich wrote:
>>> 
>>>> So, our libmili.a, libsiloh5.a and libhdf5.a libraries have dependencies
>>>> on another library, libsz.  I've tried adding  -lz
>>>>  /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a  to every STRING
>>>> I can in the CMakeCache.txt file, but I'm stuck on this error.  How can I
>>>> append linker flags to what cmake is doing here?  You can see that the -lz
>>>> and libsz.a are being inserted here, but it needs to come at the end of the
>>>> link line to resolve the symbols.  I might resort to sed and grep if this
>>>> keeps up, but I hope I don't have to.
>>>> 
>>>> 
>>>> Linking CXX executable ../../../../bin/ServerManagerStateLoader
>>>> cd
>>>> /nfs/tmp2/rcook/Paraview/3.10/build/ParaView-3.10.0/build/Servers/ServerManager/Testing/Cxx
>>>> && /usr/gapps/visit/cmake/2.8.3/linux-x86_64_gcc-4.1/bin/cmake -E
>>>> cmake_link_script CMakeFiles/ServerManagerStateLoader.dir/link.txt
>>>> --verbose=1
>>>> /usr/local/bin/g++
>>>>  -I/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/include
>>>>  -I/usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/include
>>>>  -Wno-deprecated -g
>>>> -L/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib
>>>> -L/usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/lib -lmili
>>>>  /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a -lz
>>>> /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a
>>>> CMakeFiles/ServerManagerStateLoader.dir/ServerManagerStateLoader.cxx.o
>>>> CMakeFiles/ServerManagerStateLoader.dir/vtkTestingProcessModuleGUIHelper.cxx.o
>>>> CMakeFiles/ServerManagerStateLoader.dir/vtkTestingOptions.cxx.o  -o
>>>> ../../../../bin/ServerManagerStateLoader -rdynamic
>>>> ../../../../bin/libvtkPVServerManager.a ../../../../bin/libvtkPVFiltersCS.a
>>>> ../../../../bin/libvtkPVFilters.a ../../../../bin/libvtkPVServerCommonCS.a
>>>> ../../../../bin/libvtkPVServerCommon.a
>>>> ../../../../bin/libvtkPVCommandOptions.a ../../../../bin/libvtkChartsCS.a
>>>> ../../../../bin/libvtkViewsCS.a ../../../../bin/libvtkInfovisCS.a
>>>> ../../../../bin/libQVTK.a
>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtWebKit.so
>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtXmlPatterns.so
>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtNetwork.so
>>>> ../../../../bin/libIceTMPI.a ../../../../bin/libIceTGL.a
>>>> ../../../../bin/libIceTCore.a -lGLU
>>>> ../../../../bin/libvtkVolumeRenderingCS.a
>>>> ../../../../bin/libvtkVolumeRendering.a ../../../../bin/libvtkWidgetsCS.a
>>>> ../../../../bin/libKWCommon.a ../../../../bin/libvtkCharts.a
>>>> ../../../../bin/libvtkViews.a ../../../../bin/libvtkInfovis.a
>>>> ../../../../bin/libvtkWidgets.a ../../../../bin/libvtkalglib.a
>>>> ../../../../bin/libvtkXdmfCS.a ../../../../bin/libvtkXdmf.a
>>>> ../../../../bin/libXdmf.a ../../../../bin/libvtklibxml2.a -lm
>>>> ../../../../bin/libvtkVisItDatabasesCS.a
>>>> ../../../../bin/libvtkVisItAVTAlgorithmsCS.a
>>>> ../../../../bin/libvtkHybridCS.a ../../../../bin/libvtkParallelCS.a
>>>> ../../../../bin/libvtkHybrid.a ../../../../bin/libvtkParallel.a
>>>> ../../../../bin/libVPIC.a ../../../../bin/libCosmo.a
>>>> /usr/local/tools/mvapich-gnu/lib/shared/libmpich.so
>>>> ../../../../bin/libvtkexoIIc.a ../../../../bin/libvtkRenderingCS.a
>>>> ../../../../bin/libvtkRendering.a ../../../../bin/libvtkftgl.a
>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtGui.so
>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtSql.so
>>>> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtCore.so
>>>> -lGL ../../../../bin/libvtkfreetype.a -lXt -lSM -lICE -lX11 -lXext
>>>> ../../../../bin/libvtkGenericFilteringCS.a
>>>> ../../../../bin/libvtkGenericFiltering.a ../../../../bin/libvtkGraphicsCS.a
>>>> ../../../../bin/libvtkImagingCS.a ../../../../bin/libvtkIOCS.a
>>>> ../../../../bin/libvtkFilteringCS.a ../../../../bin/libvtkCommonCS.a
>>>> ../../../../bin/libvtkClientServer.a ../../../../bin/libvtkVisItDatabases.a
>>>> ../../../../bin/libvtkVisItAVTAlgorithms.a
>>>> ../../../../bin/libavtdatabase_par.a ../../../../bin/libavtpipeline_par.a
>>>> ../../../../bin/libavtdbatts.a ../../../../bin/libavtivp.a
>>>> ../../../../bin/libvisit_vtk.a ../../../../bin/libvtkGraphics.a
>>>> ../../../../bin/libvtkverdict.a ../../../../bin/libvtkImaging.a
>>>> ../../../../bin/liblightweight_visit_vtk.a ../../../../bin/libvtkIO.a
>>>> ../../../../bin/libvtkDICOMParser.a ../../../../bin/libvtkNetCDF_cxx.a
>>>> ../../../../bin/libvtkmetaio.a ../../../../bin/libvtksqlite.a
>>>> ../../../../bin/libvtkpng.a ../../../../bin/libvtktiff.a
>>>> ../../../../bin/libvtkzlib.a ../../../../bin/libvtkjpeg.a
>>>> ../../../../bin/libvtkexpat.a ../../../../bin/libvtkFiltering.a
>>>> ../../../../bin/libavtmath.a ../../../../bin/libvtkCommon.a
>>>> ../../../../bin/libvtksys.a -lm -lpthread -lz
>>>>  /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a -ldl
>>>> ../../../../bin/libvisitcommon.a ../../../../bin/libvtkNetCDF.a
>>>> /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a
>>>> /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a
>>>> /usr/gapps/visit/cgns/3.0.8/linux-x86_64_gcc-4.1/lib/libcgns.a
>>>> /usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/lib/libmili.a
>>>> -Wl,-rpath,/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib:/usr/local/tools/mvapich-gnu/lib/shared
>>>> /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a(H5Z.o):
>>>> In function `H5Z_init_interface':
>>>> H5Z.c:(.text+0x27d): undefined reference to `SZ_encoder_enabled'
>>>> 
>>>> /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a(H5Zszip.o):
>>>> In function `H5Z_filter_szip':
>>>> H5Zszip.c:(.text+0x121): undefined reference to
>>>> `SZ_BufftoBuffDecompress'
>>>> H5Zszip.c:(.text+0x1ce): undefined reference to `SZ_BufftoBuffCompress'
>>>> 
>>>> /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a(silo_hdf5.o):
>>>> In function `db_hdf5_InqMeshName':
>>>> silo_hdf5.c:(.text+0x839e): undefined reference to `H5Topen1'
>>>> 
>>>> /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a(silo_hdf5.o):
>>>> In function `db_hdf5_hdrwr':
>>>> 
>>>> --
>>>> ✐Richard Cook
>>>> ✇ Lawrence Livermore National Laboratory
>>>> Bldg-453 Rm-4024, Mail Stop L-557
>>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>>> ☎ (office) (925) 423-9605
>>>> ☎ (fax) (925) 423-6961
>>>> ---
>>>> Information Management & Graphics Grp., Services & Development Div.,
>>>> Integrated Computing & Communications Dept.
>>>> (opinions expressed herein are mine and not those of LLNL)
>>>> 
>>>> 
>>>> 
>>>> _______________________________________________
>>>> Powered by www.kitware.com
>>>> 
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>> 
>>>> Please keep messages on-topic and check the ParaView Wiki at:
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>>>> 
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://www.paraview.org/mailman/listinfo/paraview
>>> 
>>> --
>>> ✐Richard Cook
>>> ✇ Lawrence Livermore National Laboratory
>>> Bldg-453 Rm-4024, Mail Stop L-557
>>> 7000 East Avenue,  Livermore, CA, 94550, USA
>>> ☎ (office) (925) 423-9605
>>> ☎ (fax) (925) 423-6961
>>> ---
>>> Information Management & Graphics Grp., Services & Development Div.,
>>> Integrated Computing & Communications Dept.
>>> (opinions expressed herein are mine and not those of LLNL)
>>> 
>>> 
>>> 
>>> _______________________________________________
>>> Powered by www.kitware.com
>>> 
>>> Visit other Kitware open-source projects at
>>> http://www.kitware.com/opensource/opensource.html
>>> 
>>> Please keep messages on-topic and check the ParaView Wiki at:
>>> http://paraview.org/Wiki/ParaView
>>> 
>>> Follow this link to subscribe/unsubscribe:
>>> http://www.paraview.org/mailman/listinfo/paraview
>> 
>> 
>> --
>> ✐Richard Cook
>> ✇ Lawrence Livermore National Laboratory
>> Bldg-453 Rm-4024, Mail Stop L-557
>> 7000 East Avenue,  Livermore, CA, 94550, USA
>> ☎ (office) (925) 423-9605
>> ☎ (fax) (925) 423-6961
>> ---
>> Information Management & Graphics Grp., Services & Development Div.,
>> Integrated Computing & Communications Dept.
>> (opinions expressed herein are mine and not those of LLNL)
>> 
>> 
>> 
>> _______________________________________________
>> Powered by www.kitware.com
>> 
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>> 
>> Please keep messages on-topic and check the ParaView Wiki at:
>> http://paraview.org/Wiki/ParaView
>> 
>> Follow this link to subscribe/unsubscribe:
>> http://www.paraview.org/mailman/listinfo/paraview
>> 
>> 
> 
> 
> 
> -- 
> Robert Maynard

-- 
✐Richard Cook   
✇ Lawrence Livermore National Laboratory
Bldg-453 Rm-4024, Mail Stop L-557        
7000 East Avenue,  Livermore, CA, 94550, USA
☎ (office) (925) 423-9605    
☎ (fax) (925) 423-6961
---
Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
(opinions expressed herein are mine and not those of LLNL)

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