[Paraview] Still more trouble compiling VisitBridge with Paraview 3.10 on RHEL 5
Robert Maynard
robert.maynard at kitware.com
Fri Apr 8 15:06:47 EDT 2011
Hi Rich,
I am currently working on fixing the issues with the MILI reader not
compiling correctly.
On Fri, Apr 8, 2011 at 1:15 PM, Cook, Rich <cook47 at llnl.gov> wrote:
> Aha, it's the semicolon syntax that was unknown to me. Thanks.
> I do want to reiterate that turning on the MILI reader did not result in a
> successful reader build, because the include and library settings do not get
> placed in the right makefiles. I have to manually hack the link.txt and
> make.flags files or otherwise do workarounds for that. As long as I'm doing
> that anyhow, I can just place the deeper dependencies there as well.
> On Apr 8, 2011, at 6:26 AM, David Partyka wrote:
>
> Hi Rich,
> Because you're building static you need to tell CMake what your
> Silo/Mili/HDF5 dependencies are because it has no way of knowing. To do
> this, in ccmake/cmake-gui you can list them in the same variables where you
> specified SILO_LIBRARY,MILI_LIBRARY, HDF5_LIBRARY/HDF5_LIBRARIES. This
> should give CMake enough information to compute the correct link line.
> For example, you should be able to set these in ccmake/cmake-gui like so:
> SILO_LIBRARY /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a;/usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a
> On Thu, Apr 7, 2011 at 7:19 PM, Cook, Rich <cook47 at llnl.gov> wrote:
>>
>> OK, I just solved this by hacking into all the link.txt files I found
>> laying around. This has been one ugly build process!
>> -- Rich
>>
>> On Apr 7, 2011, at 4:00 PM, Cook, Rich wrote:
>>
>> > So, our libmili.a, libsiloh5.a and libhdf5.a libraries have dependencies
>> > on another library, libsz. I've tried adding -lz
>> > /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a to every STRING
>> > I can in the CMakeCache.txt file, but I'm stuck on this error. How can I
>> > append linker flags to what cmake is doing here? You can see that the -lz
>> > and libsz.a are being inserted here, but it needs to come at the end of the
>> > link line to resolve the symbols. I might resort to sed and grep if this
>> > keeps up, but I hope I don't have to.
>> >
>> >
>> > Linking CXX executable ../../../../bin/ServerManagerStateLoader
>> > cd
>> > /nfs/tmp2/rcook/Paraview/3.10/build/ParaView-3.10.0/build/Servers/ServerManager/Testing/Cxx
>> > && /usr/gapps/visit/cmake/2.8.3/linux-x86_64_gcc-4.1/bin/cmake -E
>> > cmake_link_script CMakeFiles/ServerManagerStateLoader.dir/link.txt
>> > --verbose=1
>> > /usr/local/bin/g++
>> > -I/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/include
>> > -I/usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/include
>> > -Wno-deprecated -g
>> > -L/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib
>> > -L/usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/lib -lmili
>> > /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a -lz
>> > /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a
>> > CMakeFiles/ServerManagerStateLoader.dir/ServerManagerStateLoader.cxx.o
>> > CMakeFiles/ServerManagerStateLoader.dir/vtkTestingProcessModuleGUIHelper.cxx.o
>> > CMakeFiles/ServerManagerStateLoader.dir/vtkTestingOptions.cxx.o -o
>> > ../../../../bin/ServerManagerStateLoader -rdynamic
>> > ../../../../bin/libvtkPVServerManager.a ../../../../bin/libvtkPVFiltersCS.a
>> > ../../../../bin/libvtkPVFilters.a ../../../../bin/libvtkPVServerCommonCS.a
>> > ../../../../bin/libvtkPVServerCommon.a
>> > ../../../../bin/libvtkPVCommandOptions.a ../../../../bin/libvtkChartsCS.a
>> > ../../../../bin/libvtkViewsCS.a ../../../../bin/libvtkInfovisCS.a
>> > ../../../../bin/libQVTK.a
>> > /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtWebKit.so
>> > /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtXmlPatterns.so
>> > /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtNetwork.so
>> > ../../../../bin/libIceTMPI.a ../../../../bin/libIceTGL.a
>> > ../../../../bin/libIceTCore.a -lGLU
>> > ../../../../bin/libvtkVolumeRenderingCS.a
>> > ../../../../bin/libvtkVolumeRendering.a ../../../../bin/libvtkWidgetsCS.a
>> > ../../../../bin/libKWCommon.a ../../../../bin/libvtkCharts.a
>> > ../../../../bin/libvtkViews.a ../../../../bin/libvtkInfovis.a
>> > ../../../../bin/libvtkWidgets.a ../../../../bin/libvtkalglib.a
>> > ../../../../bin/libvtkXdmfCS.a ../../../../bin/libvtkXdmf.a
>> > ../../../../bin/libXdmf.a ../../../../bin/libvtklibxml2.a -lm
>> > ../../../../bin/libvtkVisItDatabasesCS.a
>> > ../../../../bin/libvtkVisItAVTAlgorithmsCS.a
>> > ../../../../bin/libvtkHybridCS.a ../../../../bin/libvtkParallelCS.a
>> > ../../../../bin/libvtkHybrid.a ../../../../bin/libvtkParallel.a
>> > ../../../../bin/libVPIC.a ../../../../bin/libCosmo.a
>> > /usr/local/tools/mvapich-gnu/lib/shared/libmpich.so
>> > ../../../../bin/libvtkexoIIc.a ../../../../bin/libvtkRenderingCS.a
>> > ../../../../bin/libvtkRendering.a ../../../../bin/libvtkftgl.a
>> > /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtGui.so
>> > /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtSql.so
>> > /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtCore.so
>> > -lGL ../../../../bin/libvtkfreetype.a -lXt -lSM -lICE -lX11 -lXext
>> > ../../../../bin/libvtkGenericFilteringCS.a
>> > ../../../../bin/libvtkGenericFiltering.a ../../../../bin/libvtkGraphicsCS.a
>> > ../../../../bin/libvtkImagingCS.a ../../../../bin/libvtkIOCS.a
>> > ../../../../bin/libvtkFilteringCS.a ../../../../bin/libvtkCommonCS.a
>> > ../../../../bin/libvtkClientServer.a ../../../../bin/libvtkVisItDatabases.a
>> > ../../../../bin/libvtkVisItAVTAlgorithms.a
>> > ../../../../bin/libavtdatabase_par.a ../../../../bin/libavtpipeline_par.a
>> > ../../../../bin/libavtdbatts.a ../../../../bin/libavtivp.a
>> > ../../../../bin/libvisit_vtk.a ../../../../bin/libvtkGraphics.a
>> > ../../../../bin/libvtkverdict.a ../../../../bin/libvtkImaging.a
>> > ../../../../bin/liblightweight_visit_vtk.a ../../../../bin/libvtkIO.a
>> > ../../../../bin/libvtkDICOMParser.a ../../../../bin/libvtkNetCDF_cxx.a
>> > ../../../../bin/libvtkmetaio.a ../../../../bin/libvtksqlite.a
>> > ../../../../bin/libvtkpng.a ../../../../bin/libvtktiff.a
>> > ../../../../bin/libvtkzlib.a ../../../../bin/libvtkjpeg.a
>> > ../../../../bin/libvtkexpat.a ../../../../bin/libvtkFiltering.a
>> > ../../../../bin/libavtmath.a ../../../../bin/libvtkCommon.a
>> > ../../../../bin/libvtksys.a -lm -lpthread -lz
>> > /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a -ldl
>> > ../../../../bin/libvisitcommon.a ../../../../bin/libvtkNetCDF.a
>> > /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a
>> > /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a
>> > /usr/gapps/visit/cgns/3.0.8/linux-x86_64_gcc-4.1/lib/libcgns.a
>> > /usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/lib/libmili.a
>> > -Wl,-rpath,/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib:/usr/local/tools/mvapich-gnu/lib/shared
>> > /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a(H5Z.o):
>> > In function `H5Z_init_interface':
>> > H5Z.c:(.text+0x27d): undefined reference to `SZ_encoder_enabled'
>> >
>> > /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a(H5Zszip.o):
>> > In function `H5Z_filter_szip':
>> > H5Zszip.c:(.text+0x121): undefined reference to
>> > `SZ_BufftoBuffDecompress'
>> > H5Zszip.c:(.text+0x1ce): undefined reference to `SZ_BufftoBuffCompress'
>> >
>> > /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a(silo_hdf5.o):
>> > In function `db_hdf5_InqMeshName':
>> > silo_hdf5.c:(.text+0x839e): undefined reference to `H5Topen1'
>> >
>> > /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a(silo_hdf5.o):
>> > In function `db_hdf5_hdrwr':
>> >
>> > --
>> > ✐Richard Cook
>> > ✇ Lawrence Livermore National Laboratory
>> > Bldg-453 Rm-4024, Mail Stop L-557
>> > 7000 East Avenue, Livermore, CA, 94550, USA
>> > ☎ (office) (925) 423-9605
>> > ☎ (fax) (925) 423-6961
>> > ---
>> > Information Management & Graphics Grp., Services & Development Div.,
>> > Integrated Computing & Communications Dept.
>> > (opinions expressed herein are mine and not those of LLNL)
>> >
>> >
>> >
>> > _______________________________________________
>> > Powered by www.kitware.com
>> >
>> > Visit other Kitware open-source projects at
>> > http://www.kitware.com/opensource/opensource.html
>> >
>> > Please keep messages on-topic and check the ParaView Wiki at:
>> > http://paraview.org/Wiki/ParaView
>> >
>> > Follow this link to subscribe/unsubscribe:
>> > http://www.paraview.org/mailman/listinfo/paraview
>>
>> --
>> ✐Richard Cook
>> ✇ Lawrence Livermore National Laboratory
>> Bldg-453 Rm-4024, Mail Stop L-557
>> 7000 East Avenue, Livermore, CA, 94550, USA
>> ☎ (office) (925) 423-9605
>> ☎ (fax) (925) 423-6961
>> ---
>> Information Management & Graphics Grp., Services & Development Div.,
>> Integrated Computing & Communications Dept.
>> (opinions expressed herein are mine and not those of LLNL)
>>
>>
>>
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Please keep messages on-topic and check the ParaView Wiki at:
>> http://paraview.org/Wiki/ParaView
>>
>> Follow this link to subscribe/unsubscribe:
>> http://www.paraview.org/mailman/listinfo/paraview
>
>
> --
> ✐Richard Cook
> ✇ Lawrence Livermore National Laboratory
> Bldg-453 Rm-4024, Mail Stop L-557
> 7000 East Avenue, Livermore, CA, 94550, USA
> ☎ (office) (925) 423-9605
> ☎ (fax) (925) 423-6961
> ---
> Information Management & Graphics Grp., Services & Development Div.,
> Integrated Computing & Communications Dept.
> (opinions expressed herein are mine and not those of LLNL)
>
>
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Please keep messages on-topic and check the ParaView Wiki at:
> http://paraview.org/Wiki/ParaView
>
> Follow this link to subscribe/unsubscribe:
> http://www.paraview.org/mailman/listinfo/paraview
>
>
--
Robert Maynard
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