[Paraview] Still more trouble compiling VisitBridge with Paraview 3.10 on RHEL 5

Fri Apr 8 09:26:53 EDT 2011

Hi Rich,

Because you're building static you need to tell CMake what your
Silo/Mili/HDF5 dependencies are because it has no way of knowing. To do
this, in ccmake/cmake-gui you can list them in the same variables where you
specified SILO_LIBRARY,MILI_LIBRARY, HDF5_LIBRARY/HDF5_LIBRARIES. This
should give CMake enough information to compute the correct link line.

For example, you should be able to set these in ccmake/cmake-gui like so:

SILO_LIBRARY /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a;
/usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a

On Thu, Apr 7, 2011 at 7:19 PM, Cook, Rich <cook47 at llnl.gov> wrote:

> OK, I just solved this by hacking into all the link.txt files I found
> laying around.  This has been one ugly build process!
> -- Rich
>
> On Apr 7, 2011, at 4:00 PM, Cook, Rich wrote:
>
> > So, our libmili.a, libsiloh5.a and libhdf5.a libraries have dependencies
> on another library, libsz.  I've tried adding  -lz
>  /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a  to every STRING
> I can in the CMakeCache.txt file, but I'm stuck on this error.  How can I
> append linker flags to what cmake is doing here?  You can see that the -lz
> and libsz.a are being inserted here, but it needs to come at the end of the
> link line to resolve the symbols.  I might resort to sed and grep if this
> keeps up, but I hope I don't have to.
> >
> >
> > Linking CXX executable ../../../../bin/ServerManagerStateLoader
> > cd
> /nfs/tmp2/rcook/Paraview/3.10/build/ParaView-3.10.0/build/Servers/ServerManager/Testing/Cxx
> && /usr/gapps/visit/cmake/2.8.3/linux-x86_64_gcc-4.1/bin/cmake -E
> cmake_link_script CMakeFiles/ServerManagerStateLoader.dir/link.txt
> --verbose=1
> > /usr/local/bin/g++
>  -I/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/include
>  -I/usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/include
>  -Wno-deprecated -g
> -L/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib
> -L/usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/lib -lmili
>  /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a -lz
> /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a
> CMakeFiles/ServerManagerStateLoader.dir/ServerManagerStateLoader.cxx.o
> CMakeFiles/ServerManagerStateLoader.dir/vtkTestingProcessModuleGUIHelper.cxx.o
> CMakeFiles/ServerManagerStateLoader.dir/vtkTestingOptions.cxx.o  -o
> ../../../../bin/ServerManagerStateLoader -rdynamic
> ../../../../bin/libvtkPVServerManager.a ../../../../bin/libvtkPVFiltersCS.a
> ../../../../bin/libvtkPVFilters.a ../../../../bin/libvtkPVServerCommonCS.a
> ../../../../bin/libvtkPVServerCommon.a
> ../../../../bin/libvtkPVCommandOptions.a ../../../../bin/libvtkChartsCS.a
> ../../../../bin/libvtkViewsCS.a ../../../../bin/libvtkInfovisCS.a
> ../../../../bin/libQVTK.a
> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtWebKit.so
> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtXmlPatterns.so
> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtNetwork.so
> ../../../../bin/libIceTMPI.a ../../../../bin/libIceTGL.a
> ../../../../bin/libIceTCore.a -lGLU
> ../../../../bin/libvtkVolumeRenderingCS.a
> ../../../../bin/libvtkVolumeRendering.a ../../../../bin/libvtkWidgetsCS.a
> ../../../../bin/libKWCommon.a ../../../../bin/libvtkCharts.a
> ../../../../bin/libvtkViews.a ../../../../bin/libvtkInfovis.a
> ../../../../bin/libvtkWidgets.a ../../../../bin/libvtkalglib.a
> ../../../../bin/libvtkXdmfCS.a ../../../../bin/libvtkXdmf.a
> ../../../../bin/libXdmf.a ../../../../bin/libvtklibxml2.a -lm
> ../../../../bin/libvtkVisItDatabasesCS.a
> ../../../../bin/libvtkVisItAVTAlgorithmsCS.a
> ../../../../bin/libvtkHybridCS.a ../../../../bin/libvtkParallelCS.a
> ../../../../bin/libvtkHybrid.a ../../../../bin/libvtkParallel.a
> ../../../../bin/libVPIC.a ../../../../bin/libCosmo.a
> /usr/local/tools/mvapich-gnu/lib/shared/libmpich.so
> ../../../../bin/libvtkexoIIc.a ../../../../bin/libvtkRenderingCS.a
> ../../../../bin/libvtkRendering.a ../../../../bin/libvtkftgl.a
> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtGui.so
> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtSql.so
> /usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib/libQtCore.so
> -lGL ../../../../bin/libvtkfreetype.a -lXt -lSM -lICE -lX11 -lXext
> ../../../../bin/libvtkGenericFilteringCS.a
> ../../../../bin/libvtkGenericFiltering.a ../../../../bin/libvtkGraphicsCS.a
> ../../../../bin/libvtkImagingCS.a ../../../../bin/libvtkIOCS.a
> ../../../../bin/libvtkFilteringCS.a ../../../../bin/libvtkCommonCS.a
> ../../../../bin/libvtkClientServer.a ../../../../bin/libvtkVisItDatabases.a
> ../../../../bin/libvtkVisItAVTAlgorithms.a
> ../../../../bin/libavtdatabase_par.a ../../../../bin/libavtpipeline_par.a
> ../../../../bin/libavtdbatts.a ../../../../bin/libavtivp.a
> ../../../../bin/libvisit_vtk.a ../../../../bin/libvtkGraphics.a
> ../../../../bin/libvtkverdict.a ../../../../bin/libvtkImaging.a
> ../../../../bin/liblightweight_visit_vtk.a ../../../../bin/libvtkIO.a
> ../../../../bin/libvtkDICOMParser.a ../../../../bin/libvtkNetCDF_cxx.a
> ../../../../bin/libvtkmetaio.a ../../../../bin/libvtksqlite.a
> ../../../../bin/libvtkpng.a ../../../../bin/libvtktiff.a
> ../../../../bin/libvtkzlib.a ../../../../bin/libvtkjpeg.a
> ../../../../bin/libvtkexpat.a ../../../../bin/libvtkFiltering.a
> ../../../../bin/libavtmath.a ../../../../bin/libvtkCommon.a
> ../../../../bin/libvtksys.a -lm -lpthread -lz
>  /usr/gapps/visit/szip/2.1/linux-x86_64_gcc-4.1/lib/libsz.a -ldl
> ../../../../bin/libvisitcommon.a ../../../../bin/libvtkNetCDF.a
> /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a
> /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a
> /usr/gapps/visit/cgns/3.0.8/linux-x86_64_gcc-4.1/lib/libcgns.a
> /usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/lib/libmili.a
> -Wl,-rpath,/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib:/usr/local/tools/mvapich-gnu/lib/shared
> > /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a(H5Z.o): In
> function `H5Z_init_interface':
> > H5Z.c:(.text+0x27d): undefined reference to `SZ_encoder_enabled'
> >
> /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.a(H5Zszip.o):
> In function `H5Z_filter_szip':
> > H5Zszip.c:(.text+0x121): undefined reference to `SZ_BufftoBuffDecompress'
> > H5Zszip.c:(.text+0x1ce): undefined reference to `SZ_BufftoBuffCompress'
> >
> /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a(silo_hdf5.o):
> In function `db_hdf5_InqMeshName':
> > silo_hdf5.c:(.text+0x839e): undefined reference to `H5Topen1'
> >
> /usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a(silo_hdf5.o):
> In function `db_hdf5_hdrwr':
> >
> > --
> > ✐Richard Cook
> > ✇ Lawrence Livermore National Laboratory
> > Bldg-453 Rm-4024, Mail Stop L-557
> > 7000 East Avenue,  Livermore, CA, 94550, USA
> > ☎ (office) (925) 423-9605
> > ☎ (fax) (925) 423-6961
> > ---
> > Information Management & Graphics Grp., Services & Development Div.,
> Integrated Computing & Communications Dept.
> > (opinions expressed herein are mine and not those of LLNL)
> >
> >
> >
> > _______________________________________________
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
> >
> > Please keep messages on-topic and check the ParaView Wiki at:
> http://paraview.org/Wiki/ParaView
> >
> > Follow this link to subscribe/unsubscribe:
> > http://www.paraview.org/mailman/listinfo/paraview
>
> --
> ✐Richard Cook
> ✇ Lawrence Livermore National Laboratory
> Bldg-453 Rm-4024, Mail Stop L-557
> 7000 East Avenue,  Livermore, CA, 94550, USA
> ☎ (office) (925) 423-9605
> ☎ (fax) (925) 423-6961
> ---
> Information Management & Graphics Grp., Services & Development Div.,
> Integrated Computing & Communications Dept.
> (opinions expressed herein are mine and not those of LLNL)
>
>
>
> _______________________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Please keep messages on-topic and check the ParaView Wiki at:
> http://paraview.org/Wiki/ParaView
>
> Follow this link to subscribe/unsubscribe:
> http://www.paraview.org/mailman/listinfo/paraview
>
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