[Paraview] A new problem compiling Paraview 3.10 on linux RHEL 5 clusters with Visit Bridge

[Robert Maynard]

Hi,

You need to need to do a clean build with VTK_USE_SYSTEM_HDF5 turned
on and set to the hdf5 you used to build silo with.

On Thu, Apr 7, 2011 at 1:59 PM, Cook, Rich <cook47 at llnl.gov> wrote:
> Hi,
> I'm making some progress, but now I'm stuck on including the visit silo reader.  Our silo library seems to depend on HDF5.
>
> If I set the following variables:
> VISIT_BUILD_READER_Silo:BOOL=ON
> SILO_INCLUDE_DIR:PATH=/usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/include
> SILO_LIBRARY:FILEPATH=/usr/gapps/visit/silo/4.8/linux-x86_64_gcc-4.1/lib/libsiloh5.a
>
> then the linker fails with some HDF5 unresolved symbols in libsiloh5.a.  What I'd like to do is add  -L/usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib -lhdf5 to the link flags but I cannot find a place to add these.  I tried the following:
>
> CMAKE_EXE_LINKER_FLAGS:STRING=   -L/usr/global/tools/Kitware/Paraview/3.10/chaos_4_x86_64_ib/lib   -L/usr/gapps/visit/mili/1.10.0/linux-x86_64_gcc-4.1/lib -lmili  /usr/gapps/visit/hdf5/1.8.4/linux-x86_64_gcc-4.1/lib/libhdf5.so
>
> however, this gives me a mysterious error
>
> [  1%] Generating ../H5lib_settings.c
> cd /nfs/tmp2/rcook/Paraview/3.10/build/ParaView-3.10.0/build/VTK/Utilities/vtkhdf5/src && ../../../../bin/H5make_libsettings > /nfs/tmp2/rcook/Paraview/3.10/build/ParaView-3.10.0/build/VTK/Utilities/vtkhdf5/H5lib_settings.c
> ../../../../bin/H5make_libsettings: error while loading shared libraries: libhdf5.so.6: cannot open shared object file: No such file or directory
> make[2]: *** [VTK/Utilities/vtkhdf5/H5lib_settings.c] Error 127
>
> I assume this is a conflict between the internal HDF5 support in Paraview and the HDF5 that our silo library was compiled against.  I am not a silo or hdf5 expert.  Can someone help me untangle this?  Thanks!
>
> --
> ✐Richard Cook
> ✇ Lawrence Livermore National Laboratory
> Bldg-453 Rm-4024, Mail Stop L-557
> 7000 East Avenue,  Livermore, CA, 94550, USA
> ☎ (office) (925) 423-9605
> ☎ (fax) (925) 423-6961
> ---
> Information Management & Graphics Grp., Services & Development Div., Integrated Computing & Communications Dept.
> (opinions expressed herein are mine and not those of LLNL)
>
>
>
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-- 
Robert Maynard