[Paraview] paraview - client-server

Tue Feb 9 12:26:33 EST 2010

Most batch systems have an option to wait until the job is finished 
before the submit command returns.  I know PBS uses "-W block=true" and 
that SGE and LSF have similar options (but I don't recall the precise 
flags).

If your batch system doesn't provide that, I'd recommend adding some 
shell scripting to loop through checking the queue for job completion 
and not return until it's done.  The sleep thing would work, but 
wouldn't exit when the server finishes, leaving the ssh tunnels (and 
other things like portfwd if you put them in your scripts) lying around.

Incidentally, this brings up an interesting point about ParaView with 
client/server.  It doesn't try to clean up it's child processes, AFAIK. 
  For example, if you set up this ssh tunnel inside the ParaView GUI 
(e.g., using a command instead of a manual connection), and you cancel 
the connection, it will leave the ssh running.  You have to track down 
the ssh process and kill it yourself.  It's minor thing, but it can also 
prevent future connections if you don't realize there's a zombie ssh 
that kept your ports open.

On 02/08/10 21:03, burlen wrote:
> I am curious to hear what Sean has to say.
>
> But, say the batch system returns right away after the job is submitted,
> I think we can doctor the command so that it will live for a while
> longer, what about something like this:
>
> ssh -R XXXX:localhost:YYYY remote_machine "submit_my_job.sh && sleep
> 100d"
>
>
> pat marion wrote:
>> Hey just checked out the wiki page, nice! One question, wouldn't this
>> command hang up and close the tunnel after submitting the job?
>> ssh -R XXXX:localhost:YYYY remote_machine submit_my_job.sh
>> Pat
>>
>> On Mon, Feb 8, 2010 at 8:12 PM, pat marion <pat.marion at kitware.com
>> <mailto:pat.marion at kitware.com>> wrote:
>>
>> Actually I didn't write the notes at the hpc.mil <http://hpc.mil>
>> link.
>>
>> Here is something- and maybe this is the problem that Sean refers
>> to- in some cases, when I have set up a reverse ssh tunnel from
>> login node to workstation (command executed from workstation) then
>> the forward does not work when the compute node connects to the
>> login node. However, if I have the compute node connect to the
>> login node on port 33333, then use portfwd to forward that to
>> localhost:11111, where the ssh tunnel is listening on port 11111,
>> it works like a charm. The portfwd tricks it into thinking the
>> connection is coming from localhost and allow the ssh tunnel to
>> work. Hope that made a little sense...
>>
>> Pat
>>
>>
>> On Mon, Feb 8, 2010 at 6:29 PM, burlen <burlen.loring at gmail.com
>> <mailto:burlen.loring at gmail.com>> wrote:
>>
>> Nice, thanks for the clarification. I am guessing that your
>> example should probably be the recommended approach rather
>> than the portfwd method suggested on the PV wiki. :) I took
>> the initiative to add it to the Wiki. KW let me know if this
>> is not the case!
>>
>> http://paraview.org/Wiki/Reverse_connection_and_port_forwarding#Reverse_connection_over_an_ssh_tunnel
>>
>>
>> Would you mind taking a look to be sure I didn't miss anything
>> or bollix it up?
>>
>> The sshd config options you mentioned may be why your method
>> doesn't work on the Pleiades system, either that or there is a
>> firewall between the front ends and compute nodes. In either
>> case I doubt the NAS sys admins are going to reconfigure for
>> me :) So at least for now I'm stuck with the two hop ssh
>> tunnels and interactive batch jobs. if there were someway to
>> script the ssh tunnel in my batch script I would be golden...
>>
>> By the way I put the details of the two hop ssh tunnel on the
>> wiki as well, and a link to Pat's hpc.mil <http://hpc.mil>
>> notes. I don't dare try to summarize them since I've never
>> used portfwd and it refuses to compile both on my workstation
>> and the cluster.
>>
>> Hopefully putting these notes on the Wiki will save future
>> ParaView users some time and headaches.
>>
>>
>> Sean Ziegeler wrote:
>>
>> Not quite- the pvsc calls ssh with both the tunnel options
>> and the commands to submit the batch job. You don't even
>> need a pvsc; it just makes the interface fancier. As long
>> as you or PV executes something like this from your machine:
>> ssh -R XXXX:localhost:YYYY remote_machine submit_my_job.sh
>>
>> This means that port XXXX on remote_machine will be the
>> port to which the server must connect. Port YYYY (e.g.,
>> 11111) on your client machine is the one on which PV
>> listens. You'd have to tell the server (in the batch
>> submission script, for example) the name of the node and
>> port XXXX to which to connect.
>>
>> One caveat that might be causing you problems, port
>> forwarding (and "gateway ports" if the server is running
>> on a different node than the login node) must be enabled
>> in the remote_machine's sshd_config. If not, no ssh
>> tunnels will work at all (see: man ssh and man
>> sshd_config). That's something that an administrator
>> would need to set up for you.
>>
>> On 02/08/10 12:26, burlen wrote:
>>
>> So to be sure about what you're saying: Your .pvsc
>> script ssh's to the
>> front end and submits a batch job which when it's
>> scheduled , your batch
>> script creates a -R style tunnel and starts pvserver
>> using PV reverse
>> connection. ? or are you using portfwd or a second ssh
>> session to
>> establish the tunnel ?
>>
>> If you're doing this all from your .pvsc script
>> without a second ssh
>> session and/or portfwd that's awesome! I haven't been
>> able to script
>> this, something about the batch system prevents the
>> tunnel created
>> within the batch job's ssh session from working. I
>> don't know if that's
>> particular to this system or a general fact of life
>> about batch systems.
>>
>> Question: How are you creating the tunnel in your
>> batch script?
>>
>> Sean Ziegeler wrote:
>>
>> Both ways will work for me in most cases, i.e. a
>> "forward" connection
>> with ssh -L or a reverse connection with ssh -R.
>>
>> However, I find that the reverse method is more
>> scriptable. You can
>> set up a .pvsc file that the client can load and
>> will call ssh with
>> the appropriate options and commands for the
>> remote host, all from the
>> GUI. The client will simply wait for the reverse
>> connection from the
>> server, whether it takes 5 seconds or 5 hours for
>> the server to get
>> through the batch queue.
>>
>> Using the forward connection method, if the server
>> isn't started soon
>> enough, the client will attempt to connect and
>> then fail. I've always
>> had to log in separately, wait for the server to
>> start running, then
>> tell my client to connect.
>>
>> -Sean
>>
>> On 02/06/10 12:58, burlen wrote:
>>
>> Hi Pat,
>>
>> My bad. I was looking at the PV wiki, and
>> thought you were talking about
>> doing this without an ssh tunnel and using
>> only port forward and
>> paraview's --reverse-connection option . Now
>> that I am reading your
>> hpc.mil <http://hpc.mil> post I see what you
>> mean :)
>>
>> Burlen
>>
>>
>> pat marion wrote:
>>
>> Maybe I'm misunderstanding what you mean
>> by local firewall, but
>> usually as long as you can ssh from your
>> workstation to the login node
>> you can use a reverse ssh tunnel.
>>
>>
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