[Paraview] error message

Tue Sep 22 12:46:12 EDT 2009

Oops, I just fixed the small one. It was a silly mistake, so now it opens
fine. So yeah, it's probably the size of the file that was the problem...

Any chance that can be fixed?

Thanks much,
Karen

On Tue, Sep 22, 2009 at 12:40 PM, Karen Lee <kylkaren at gmail.com> wrote:

> Hi Michael,
>
> Thanks for your response. That is possible since I have 6 million nodes and
> 4 million elements. However, I was able to open a file with 1 million nodes
> and 7 million elements before...
>
> And I have this new file that's 30k nodes long and 600k elements. It just
> crashed paraview (quit unexpectedly is the message I got from the Mac OS)
> without giving any sort of warning. Did that three times...
>
> What could this problem here? (I checked the number of elements, nodes etc
> and everything seems legit and it's way smaller than what I was able to
> open...)
>
> Thanks,
> Karen
>
>
>
>
> On Tue, Sep 22, 2009 at 12:15 PM, Stephens, Michael M ERDC-ITL-MS <
> Michael.M.Stephens at usace.army.mil> wrote:
>
>> karen,
>>
>> here's a possibility.
>> i haven't done the math for your number of points/cells; but xml files
>> have
>> an inherent size limit.
>> i've seen this error for appended vtk xml files (not ascii as yours are)
>>
>> i believe it has to do with the size of the offsets.
>> it's a limitation of xml itself.
>>
>> i've use vtkpython scripts on a 64 bit linux machine to write vtk xml
>> files
>> that i can't read
>> with vtk or paraview. which is just wrong.
>>
>> i've asked that the xml writers take a look at what's being written
>> and at least send a warning that the file violates this xml limit.
>> hasn't happened yet.
>>
>> just a thought.
>>
>> -m
>>
>> -----Original Message-----
>> From: paraview-bounces at paraview.org [mailto:paraview-bounces at paraview.org]
>> On
>> Behalf Of Karen Lee
>> Sent: Monday, September 21, 2009 4:08 PM
>> To: paraview at paraview.org
>> Subject: [Paraview] error message
>>
>> Dear paraview developers and users,
>>
>> I got this error when I attempted to open a .vtu file:
>>
>> ERROR: In
>> /Users/berk/Work/ReleaseBuilds/ParaView3/VTK/IO/vtkXMLDataReader.cxx, line
>> 502
>> vtkXMLUnstructuredGridReader (0x19373cb0): Cannot read point data array
>> "rho"
>> from PointData in piece 0.  The data array in the element may be too
>> short.
>>
>>
>> ERROR: In
>> /Users/berk/Work/ReleaseBuilds/ParaView3/VTK/IO/vtkXMLDataReader.cxx, line
>> 502
>> vtkXMLUnstructuredGridReader (0x193f8e00): Cannot read point data array
>> "|E|"
>> from PointData in piece 0.  The data array in the element may be too
>> short.
>>
>>
>> ERROR: In
>> /Users/berk/Work/ReleaseBuilds/ParaView3/VTK/IO/vtkXMLDataReader.cxx, line
>> 502
>> vtkXMLUnstructuredGridReader (0x19328870): Cannot read point data array
>> "|E|"
>> from PointData in piece 0.  The data array in the element may be too
>> short.
>>
>>
>> ERROR: In
>>
>> /Users/berk/Work/ReleaseBuilds/ParaView3/Servers/Filters/vtkTransferFunctionE
>> ditorWidgetSimple1D.cxx, line 1246
>> vtkTransferFunctionEditorWidgetSimple1D (0x178c99d0): Cannot move a
>> transfer
>> function node horizontally past the ones on either side of it.
>>
>>
>> ERROR: In
>>
>> /Users/berk/Work/ReleaseBuilds/ParaView3/VTK/Filtering/vtkColorTransferFuncti
>> on.cxx, line 1105
>> vtkColorTransferFunction (0x262505d0): Index out of range!
>>
>>
>> ERROR: In
>> /Users/berk/Work/ReleaseBuilds/ParaView3/VTK/IO/vtkXMLDataReader.cxx, line
>> 502
>> vtkXMLUnstructuredGridReader (0x26251870): Cannot read point data array
>> "rho"
>> from PointData in piece 0.  The data array in the element may be too
>> short.
>>
>>
>> I guess it's all the same error. I  have some working files from before
>> and I
>> created this file from the same script. I have checked the number of
>> points
>> and the number of elements literally more than 5 or 6 times, and I have no
>> idea why it would give me ths kind of error... My file is huge so I won't
>> sent it, but it looks roughly like this:
>>
>> <?xml version="1.0"?>
>> <VTKFile type="UnstructuredGrid">
>> <UnstructuredGrid>
>> <Piece NumberOfPoints="6225340"  NumberOfCells="4980272" >
>> <Points>
>> <DataArray type="Float32" NumberOfComponents="3">
>> -0.101 -0.0184 -0.0834
>> -0.088 -0.05915 -0.1417
>> -0.050499994 -0.00920002 -0.1417
>>  ... x y z coordinates, 6225340 of these numbers in total
>> </DataArray>
>> </Points>
>> <Cells>
>> <DataArray type="Int32" Name="connectivity">
>> 1 4 7 2
>> 2 1 6 7
>> 2 6 8 7
>> 7 2 4 8
>> 6 2 0 1
>> .... (lists of elements, 4980272 of these in total, and starting from 0
>> for
>> node indexing like I did in the other files that opened fine.)
>> </DataArray>
>> <DataArray type="Int32" Name="offsets">
>> 4
>> 8
>> 12
>> ..., number of these is 4980272
>> </DataArray>
>> <DataArray type="UInt8" Name="types">
>> 10
>> 10
>> 10
>> ... (4980272 copies of "10")
>> </DataArray>
>> </Cells>
>> <PointData Scalars="rho" >
>> <DataArray type="Float32" Name="rho">
>> 1.2663767364491398E-10
>> 6.45082075320499E-11
>> ... (number of data entries = number of nodes = 6225340)
>> </DataArray>
>> </PointData>
>> </Piece>
>> </UnstructuredGrid>
>> </VTKFile>
>>
>> Could the problem be that the file is too large? I'm running on a Macpro
>> with
>> 16 GB's of RAM, and it's a 2 x 2.26GHz quad-core Intel Xeon processor.
>>
>> Any help would be greatly appreciated!
>>
>> Thanks,
>> Karen
>>
>>
>
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