[Paraview] Problems using Paraview 3.6.1 on a linux cluster
alfacentauri2 at inwind.it
alfacentauri2 at inwind.it
Mon Oct 12 03:46:03 EDT 2009
> Your X is going over ssh back to the machine you connected from. If X
> is running on the server, try setting DISPLAY to :0 (making sure that
> xauth stuff is setup properly) and run again.
If we set DISPLAY to :0, we can't run paraview (the error is: "No protocol specified. paraview-real: cannot connect to X server :0"); can you explain how set xauth stuff?
Moreover we noticed two things on our cluster:
1) the usual error "/ParaView/ParaView3/Servers/Common/vtkServerConnection.cxx, line 67
vtkServerConnection (0x100ffb0): Server Connection Closed!" happens when we push the button "apply" or when try to change the surface ("points", "wireframe",etc...) after loading a file in ensight format; if instead we load a file in STL format, Paraview works...
Instead on my local machine Paraview always works; but on my local machine the percentage of passed test is about 66% and on our cluster is about 33%...
2) when we start pvserver on the cluster with the command:
mpirun -np 64 -machinefile /home/utente/ParaView/ListaNodi /home/utente/ParaView/ParaView-bin/bin/pvserver --use-offscreen-rendering
each "pvserver-real" process keeps 100% - 101% of cpu on each node (even if the client isn't connect to the server): isn't it strange?
> Also, this page may be useful:
> http://paraview.org/Wiki/Setting_up_a_ParaView_Server
We already red this page and we followed the instructions in case of cluster without GPU.
Thank you again.
>
> -berk
>
> On Fri, Oct 9, 2009 at 9:24 AM, alfacentauri2 at inwind.it
> <alfacentauri2 at inwind.it> wrote:
> >> It sounds like X is not running? Or DISPLAY is not set?
> >
> > X is running and DISPLAY variable is = localhost:11.0
> > Is it ok?
> >
> > Perhaps do we need to install some debian package with apt-get?
> > For example we realized that without "libqt4-gui" package many tests failed...
> >
> > We attach the log
> >
> > We're waiting for your help :-)
> > Thanks again
> >
> >
> >>
> >> On Fri, Oct 9, 2009 at 4:38 AM, alfacentauri2 at inwind.it
> >> <alfacentauri2 at inwind.it> wrote:
> >> >> Hi Paolo,
> >> >>
> >> >> >> If you did a make install, did you compile with VTK_USE_RPATH ON or OFF?
> >> >> >
> >> >> > VTK_USE_RPATH = OFF (default, I believe)
> >> >> >
> >> >> >> This probably has something to do with not having rpath and not
> >> >> >> setting LD_LIBRARY_PATH.
> >> >> >
> >> >> > How LD_LIBRARY_PATH has to be set? On each node?
> >> >>
> >> >> Try to extend LD_LIBRARY_PATH on each node (prior to invoking one of the
> >> >> paraview binaries) with
> >> >>
> >> >> LD_LIBRARY_PATH=/home/utente/ParaView/ParaView-bin/bin/pvserver:${LD_LIBRARY_PATH}
> >> >> export LD_LIBRARY_PATH
> >> >
> >> > Now the percentage of passed test has increased from 8% to about 31%, but we still have other errors such as:
> >> >
> >> > Qt: Session management error: Authentication Rejected, reason : None of the authentication protocols specified are supported and host-based authentication failed
> >> >
> >> > and many segmentation fault, for instance:
> >> >
> >> > 81 - TestClipHyperOctree (SEGFAULT)
> >> >
> >> > the log is:
> >> >
> >> >
> >> > 81/475 Testing: TestClipHyperOctree
> >> > 81/475 Test: TestClipHyperOctree
> >> > Command: "/home/utente/ParaView/ParaView-bin/bin/GraphicsCxxTests" "TestClipHyperOctree"
> >> > Directory: /home/utente/ParaView/ParaView-bin/VTK/Graphics/Testing/Cxx
> >> > "TestClipHyperOctree" start time: Oct 09 10:04 CEST
> >> > Output:
> >> > ----------------------------------------------------------
> >> > update source3d...
> >> > source updated3d
> >> > source3d time=0.0258 s
> >> > update clipper3d...
> >> > clipper3d updated
> >> > clipper3d time=0.817477 s
> >> > update surface3d...
> >> > surface3d updated
> >> > update source2d...
> >> > source updated2d
> >> > source2d time=0.000706196 s
> >> > update clipper2d...
> >> > clipper2d updated
> >> > clipper2d time=0.00412607 s
> >> > update surface2d...
> >> > surface2d updated
> >> > update source1d...
> >> > source updated1d
> >> > source1d time=0.000261068 s
> >> > update clipper1d...
> >> > clipper1d updated
> >> > clipper1d time=0.00228786 s
> >> > update surface1d...
> >> > surface1d updated
> >> > ----------------------------------------------------------
> >> > "TestClipHyperOctree" end time: Oct 09 10:04 CEST
> >> > "TestClipHyperOctree" time elapsed: 00:00:02
> >> > ----------------------------------------------------------
> >> >
> >> > You can see the file in attach.
> >> >
> >> >
> >> > Also, we still have the problem when we use the pvserver on our cluster and connect from a client (we wrote you yesterday, on 8th October 2009)
> >> >
> >> > We hope you'll help us.
> >> > Thank you very much again!
> >> >
> >> >
> >> >>
> >> >> Karl
> >> >>
> >> >
> >> >
> >>
> >
>
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