[Paraview] compile error with 3.6.1 on RHEL5

[Jack Gundrum]

Berk,
Thanks for your reply, I get the following from CMakeCache


MPI_COMPILER:FILEPATH=/usr/global/openmpi/1.3.3/gnu/bin/mpic++
MPI_COMPILE_FLAGS:STRING=
MPI_EXTRA_LIBRARY:FILEPATH=MPI_EXTRA_LIBRARY-NOTFOUND
MPI_INCLUDE_PATH:PATH=/usr/global/openmpi/1.3.3/gnu/include
MPI_LIBRARY:FILEPATH=/usr/global/openmpi/1.3.3/gnu/lib/libmpi.so
MPI_LINK_FLAGS:STRING=
VTK_MPI_MAX_NUMPROCS:STRING=2
VTK_MPI_NUMPROC_FLAG:STRING=-np
VTK_MPI_POSTFLAGS:STRING=
VTK_MPI_PREFLAGS:STRING=
VTK_MPI_PRENUMPROC_FLAGS:STRING=
...
...
...


 Geveci wrote:
> It sounds like the link line is missing the C++ bindings for MPI. Can
> you grep for MPI_ in the CMakeCache.txt file (in your binary tree)? I
> would like to know that MPI_LIBRARY and MPI_EXTRA_LIBRARY are.
>
> -berk
>
> On Fri, Dec 18, 2009 at 4:27 PM, Jack Gundrum <jsg3 at psu.edu> wrote:
>   
>> Hi all,
>> I run into the following compile error with gcc (GCC) 4.4.2 and openmpi
>> 1.3.3 on RHEL5?
>>
>>
>>
>> Scanning dependencies of target vtkSMExtractDocumentation
>> [ 86%] Building CXX object
>> Servers/ServerManager/CMakeFiles/vtkSMExtractDocumentation.dir/vtkSMExtractDocumentation.o
>> Linking CXX executable ../../bin/vtkSMExtractDocumentation
>> /usr/global/paraview/3.6.1/paraview3build/bin/libvtkPVServerCommon.a(vtkPVMPICommunicator.o):
>> In function `MPI::Intracomm::Intracomm()':
>> vtkPVMPICommunicator.cxx:(.text._ZN3MPI9IntracommC2Ev[MPI::Intracomm::Intracomm()]+0x11):
>> undefined reference to `MPI::Comm::Comm()'
>> /usr/global/paraview/3.6.1/paraview3build/bin/libvtkPVServerCommon.a(vtkPVMPICommunicator.o):
>> In function `MPI::Intracomm::Intracomm(ompi_communicator_t*)':
>> vtkPVMPICommunicator.cxx:(.text._ZN3MPI9IntracommC1EP19ompi_communicator_t[MPI::Intracomm::Intracomm(ompi_communicator_t*)]+0x16):
>> undefined reference to `MPI::Comm::Comm()'
>> /usr/global/paraview/3.6.1/paraview3build/bin/libvtkPVServerCommon.a(vtkPVMPICommunicator.o):
>> In function `MPI::Op::Init(void (*)(void const*, void*, int, MPI::Datatype
>> const&), bool)':
>> vtkPVMPICommunicator.cxx:(.text._ZN3MPI2Op4InitEPFvPKvPviRKNS_8DatatypeEEb[MPI::Op::Init(void
>> (*)(void const*, void*, int, MPI::Datatype const&), bool)]+0x20): undefined
>> reference to `ompi_mpi_cxx_op_intercept'
>> /usr/global/paraview/3.6.1/paraview3build/bin/libvtkPVServerCommon.a(vtkPVMPICommunicator.o):(.rodata._ZTVN3MPI3WinE[vtable
>> for MPI::Win]+0x48): undefined reference to `MPI::Win::Free()'
>> /usr/global/paraview/3.6.1/paraview3build/bin/libvtkPVServerCommon.a(vtkPVMPICommunicator.o):(.rodata._ZTVN3MPI8DatatypeE[vtable
>> for MPI::Datatype]+0x78): undefined reference to `MPI::Datatype::Free()'
>> collect2: ld returned 1 exit status
>> make[2]: *** [bin/vtkSMExtractDocumentation] Error 1
>> make[1]: ***
>> [Servers/ServerManager/CMakeFiles/vtkSMExtractDocumentation.dir/all] Error 2
>>
>> --
>> Jack Gundrum
>> ITS - Research Computing & Cyberinfrastucture
>> Penn State University
>>
>> _______________________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Please keep messages on-topic and check the ParaView Wiki at:
>> http://paraview.org/Wiki/ParaView
>>
>> Follow this link to subscribe/unsubscribe:
>> http://www.paraview.org/mailman/listinfo/paraview
>>
>>     


-- 
Jack Gundrum
ITS - Research Computing & Cyberinfrastucture
Penn State University