[Paraview] compiling paraview against mpich2
Berk Geveci
berk.geveci at kitware.com
Wed Dec 16 09:30:43 EST 2009
That's strange. Are you positive that you set LD_LIBRARY_PATH
correctly and you also exported the variable (assuming you are using
bash/ksh/zsh)?
-berk
On Tue, Dec 15, 2009 at 11:52 PM, Huan Sun <hsun at math.psu.edu> wrote:
>
> Hi,
>
> Thanks for the help. Somehow cmake didn't find the correct mpiexec -- it
> did find the libmpichcxx.so. I fixed the mpiexec, compiled and
> installed.
> But when i ran ./pvserver --ldd (results attached below)
> It seems that the paraview didn't find libmpichcxx.
> I installed mpich2 under my local account and put the lib path into
> LD_LIBRARY_PATH.
> I wonder if you could help me figure out what happened.
>
> Thanks!
>
> Huan
>
>
>
>
> linux-vdso.so.1 => (0x00007fff0db73000)
> libvtkPVServerCommon.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkPVServerCommon.so (0x00007f0228533000)
> libvtkPVFilters.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkPVFilters.so
> (0x00007f0227f23000)
> libvtkPVServerManager.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkPVServerManager.so (0x00007f02276ef000)
> libvtkPVFiltersCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkPVFiltersCS.so
> (0x00007f022741e000)
> libvtkPVServerCommonCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkPVServerCommonCS.so (0x00007f02271d3000)
> libvtkInfovisCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkInfovisCS.so
> (0x00007f0226f52000)
> libKWCommon.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libKWCommon.so
> (0x00007f0226d3a000)
> libvtkPVCommandOptions.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkPVCommandOptions.so (0x00007f0226b04000)
> libvtkXdmfCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkXdmfCS.so
> (0x00007f02268f7000)
> libvtkPVPythonInterpretor.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkPVPythonInterpretor.so (0x00007f02266e8000)
> libpython2.5.so.1.0 => /usr/lib/libpython2.5.so.1.0
> (0x00007f0226378000)
> libutil.so.1 => /lib/libutil.so.1 (0x00007f0226175000)
> libicet_mpi.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libicet_mpi.so
> (0x00007f0225f72000)
> libicet_strategies.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libicet_strategies.so
> (0x00007f0225d6a000)
> libicet.so => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libicet.so
> (0x00007f0225b58000)
> libGLU.so.1 => /usr/lib/libGLU.so.1 (0x00007f02258d4000)
> libvtkHybridCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkHybridCS.so
> (0x00007f0225625000)
> libvtkParallelCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkParallelCS.so
> (0x00007f0225390000)
> libvtkVolumeRenderingCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkVolumeRenderingCS.so (0x00007f0225145000)
> libvtkVolumeRendering.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkVolumeRendering.so.pv3.6 (0x00007f02248f0000)
> libvtkWidgetsCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkWidgetsCS.so
> (0x00007f0224618000)
> libvtkRenderingCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkRenderingCS.so
> (0x00007f02242be000)
> libvtkGenericFilteringCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkGenericFilteringCS.so (0x00007f02240a3000)
> libvtkGenericFiltering.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkGenericFiltering.so.pv3.6 (0x00007f0223e5b000)
> libvtkGraphicsCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkGraphicsCS.so
> (0x00007f0223a85000)
> libvtkImagingCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkImagingCS.so
> (0x00007f02237d2000)
> libvtkIOCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkIOCS.so
> (0x00007f02234da000)
> libvtkFilteringCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkFilteringCS.so
> (0x00007f022314d000)
> libvtkCommonCS.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkCommonCS.so
> (0x00007f0222e1b000)
> libvtkClientServer.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkClientServer.so
> (0x00007f0222bc2000)
> libvtkXdmf.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkXdmf.so
> (0x00007f022293c000)
> libXdmf.so => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libXdmf.so
> (0x00007f02226bd000)
> libvtkhdf5.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkhdf5.so
> (0x00007f022228d000)
> libQtChart.so
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libQtChart.so
> (0x00007f0221fbf000)
> libQtXml.so.4
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libQtXml.so.4
> (0x00007f0221d52000)
> libQVTK.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libQVTK.so.pv3.6
> (0x00007f0221ab3000)
> libvtkQtChart.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkQtChart.so.pv3.6
> (0x00007f022176e000)
> libvtkViews.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkViews.so.pv3.6
> (0x00007f0221490000)
> libvtkInfovis.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkInfovis.so.pv3.6
> (0x00007f022101a000)
> libvtkWidgets.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkWidgets.so.pv3.6
> (0x00007f0220b63000)
> libvtkHybrid.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkHybrid.so.pv3.6
> (0x00007f022053a000)
> libvtkParallel.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkParallel.so.pv3.6 (0x00007f02200c3000)
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libpthread.so.0 => /lib/libpthread.so.0 (0x00007f021fea7000)
> libvtkexoIIc.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkexoIIc.so.pv3.6
> (0x00007f021fc44000)
> libvtkRendering.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkRendering.so.pv3.6 (0x00007f021f3fb000)
> libvtkIO.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkIO.so.pv3.6
> (0x00007f021ec00000)
> libvtkDICOMParser.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkDICOMParser.so.pv3.6 (0x00007f021e9bd000)
> libvtkNetCDF.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkNetCDF.so.pv3.6
> (0x00007f021e777000)
> libvtkmetaio.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkmetaio.so.pv3.6
> (0x00007f021e490000)
> libvtksqlite.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtksqlite.so.pv3.6
> (0x00007f021e21b000)
> libvtkpng.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkpng.so.pv3.6
> (0x00007f021dfe9000)
> libvtktiff.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtktiff.so.pv3.6
> (0x00007f021dd7a000)
> libvtkjpeg.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkjpeg.so.pv3.6
> (0x00007f021db4d000)
> libvtkexpat.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkexpat.so.pv3.6
> (0x00007f021d91d000)
> libQtGui.so.4
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libQtGui.so.4
> (0x00007f021cec0000)
> libpng12.so.0 => /usr/lib/libpng12.so.0 (0x00007f021cc9b000)
> libXi.so.6 => /usr/lib/libXi.so.6 (0x00007f021ca92000)
> libXrender.so.1 => /usr/lib/libXrender.so.1 (0x00007f021c889000)
> libXrandr.so.2 => /usr/lib/libXrandr.so.2 (0x00007f021c682000)
> libXcursor.so.1 => /usr/lib/libXcursor.so.1 (0x00007f021c478000)
> libXinerama.so.1 => /usr/lib/libXinerama.so.1 (0x00007f021c276000)
> libXfixes.so.3 => /usr/lib/libXfixes.so.3 (0x00007f021c071000)
> libfreetype.so.6 => /usr/lib/libfreetype.so.6 (0x00007f021bdf4000)
> libfontconfig.so.1 => /usr/lib/libfontconfig.so.1 (0x00007f021bbc3000)
> libQtSql.so.4
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libQtSql.so.4
> (0x00007f021b986000)
> libQtCore.so.4
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libQtCore.so.4
> (0x00007f021b5ce000)
> libz.so.1 => /usr/lib/libz.so.1 (0x00007f021b3b7000)
> libgthread-2.0.so.0 => /usr/lib/libgthread-2.0.so.0
> (0x00007f021b1b3000)
> libglib-2.0.so.0 => /usr/lib/libglib-2.0.so.0 (0x00007f021aef3000)
> libdl.so.2 => /lib/libdl.so.2 (0x00007f021acef000)
> libvtkGraphics.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkGraphics.so.pv3.6 (0x00007f021a1b0000)
> libvtkverdict.so.vtk5.5.0
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkverdict.so.vtk5.5.0 (0x00007f0219f79000)
> libvtkImaging.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkImaging.so.pv3.6
> (0x00007f02198c6000)
> libvtkFiltering.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkFiltering.so.pv3.6 (0x00007f02191fc000)
> libvtkCommon.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkCommon.so.pv3.6
> (0x00007f0218bc9000)
> libvtksys.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtksys.so.pv3.6
> (0x00007f0218968000)
> libm.so.6 => /lib/libm.so.6 (0x00007f02186e7000)
> libvtkftgl.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkftgl.so.pv3.6
> (0x00007f02184d8000)
> libGL.so.1 => /usr/lib/libGL.so.1 (0x00007f0218300000)
> libvtkfreetype.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkfreetype.so.pv3.6 (0x00007f0218063000)
> libXt.so.6 => /usr/lib/libXt.so.6 (0x00007f0217dff000)
> libSM.so.6 => /usr/lib/libSM.so.6 (0x00007f0217bf7000)
> libICE.so.6 => /usr/lib/libICE.so.6 (0x00007f02179dc000)
> libX11.so.6 => /usr/lib/libX11.so.6 (0x00007f02176d9000)
> libXext.so.6 => /usr/lib/libXext.so.6 (0x00007f02174c8000)
> librt.so.1 => /lib/librt.so.1 (0x00007f02172bf000)
> libvtklibxml2.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtklibxml2.so.pv3.6
> (0x00007f0216f14000)
> libvtkzlib.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkzlib.so.pv3.6
> (0x00007f0216cfb000)
> libvtkalglib.so.pv3.6
> => /ima/imavisitor/hsun/paraview/lib/paraview-3.6/libvtkalglib.so.pv3.6
> (0x00007f0216ade000)
> libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x00007f02167d3000)
> libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00007f02165c5000)
> libc.so.6 => /lib/libc.so.6 (0x00007f0216263000)
> /lib64/ld-linux-x86-64.so.2 (0x00007f0228899000)
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libmpichcxx.so.1.2 => not found
> libmpich.so.1.2 => not found
> libexpat.so.1 => /usr/lib/libexpat.so.1 (0x00007f021603f000)
> libpcre.so.3 => /usr/lib/libpcre.so.3 (0x00007f0215e19000)
> libGLcore.so.1 => /usr/lib/libGLcore.so.1 (0x00007f0214af3000)
> libnvidia-tls.so.1 => /usr/lib/tls/libnvidia-tls.so.1
> (0x00007f0228953000)
> libxcb-xlib.so.0 => /usr/lib/libxcb-xlib.so.0 (0x00007f02148f2000)
> libxcb.so.1 => /usr/lib/libxcb.so.1 (0x00007f02146d7000)
> libXau.so.6 => /usr/lib/libXau.so.6 (0x00007f02144d5000)
> libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0x00007f02142d0000)
>
>
>
>
> On Tue, 2009-12-15 at 20:34 -0500, Berk Geveci wrote:
>> Here is a very obscure trick. First, delete all CMake variables that
>> start with MPI_. To do this in ccmake, you have to first switch to
>> advanced view, file the MPI_ variables and hit 'd' next to each one to
>> delete them. Next, set the MPI_COMPILER to the mpicxx that is in your
>> MPI version. Next configure. CMake should pick all the right MPI
>> settings.
>>
>> -berk
>>
>> On Tue, Dec 15, 2009 at 5:57 PM, David E DeMarle
>> <dave.demarle at kitware.com> wrote:
>> > You need to link to both the mpi and mpicxx libs. Put one in
>> > MPI_LIBRARIES and the other in MPI_EXTRA_LIBRARIES (or use path
>> > separator.)
>> >
>> > I do not think it it matters whether mpich is compiled statically or not.
>> >
>> > David E DeMarle
>> > Kitware, Inc.
>> > R&D Engineer
>> > 28 Corporate Drive
>> > Clifton Park, NY 12065-8662
>> > Phone: 518-371-3971 x109
>> >
>> >
>> >
>> > On Tue, Dec 15, 2009 at 5:00 PM, Huan Sun <hsun at math.psu.edu> wrote:
>> >> Hello,
>> >>
>> >> I was trying to compile paraview against mpich2.
>> >> I wonder if I need to specify some extra mpi libraries the cmake
>> >> configuration. I don't have a root account so i built the mpich2 under
>> >> my own account. So ccmake cannot find it.
>> >>
>> >> Also, can I compile paraview against staticly built mpi libraries?
>> >>
>> >> Thanks,
>> >>
>> >> Huan
>> >>
>> >> _______________________________________________
>> >> Powered by www.kitware.com
>> >>
>> >> Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html
>> >>
>> >> Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView
>> >>
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>> >>
>> > _______________________________________________
>> > Powered by www.kitware.com
>> >
>> > Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html
>> >
>> > Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView
>> >
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>> >
>
>
>
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