From emmanuel.cosnard at outlook.fr  Thu Apr 11 11:50:05 2019
From: emmanuel.cosnard at outlook.fr (Emmanuel Cosnard)
Date: Thu, 11 Apr 2019 15:50:05 +0000
Subject: [Nirfast] Fluorescence tomography with uniform light source
 excitation
Message-ID: <AM4PR0401MB23062E50D2146B42A47406DBF72F0@AM4PR0401MB2306.eurprd04.prod.outlook.com>

Hello,

I am wondering if it would be possible to use NIRFAST to perform fluorescence tomography using uniform illumination on the entire surface of the object, to excite the fluorophore?

Best regards,

Emmanuel
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From AKABEER at mgh.harvard.edu  Mon Apr 15 17:27:36 2019
From: AKABEER at mgh.harvard.edu (Kabeer, Aiza H.)
Date: Mon, 15 Apr 2019 21:27:36 +0000
Subject: [Nirfast] Using NIRFAST in linux
Message-ID: <BN7PR04MB43884144F19B469013612337ED2B0@BN7PR04MB4388.namprd04.prod.outlook.com>

Hi,

I am trying to use NIRFAST in linux, however when I try to load a mesh I receive the following error:

Invalid MEX-file 'O:\2\users\NIRFAST\NIRFAST-9.1\toolbox\mex\distance.mexw64': Missing dependent shared libraries:
'MSVCR90.dll' required by 'O:\2\users\NIRFAST\NIRFAST-9.1\toolbox\mex\distance.mexw64'.

Any pointers or help on how to use NIRFAST in linux would be appreciated!

Thank you,

Aiza K


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
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From s.wojtkiewicz at cs.bham.ac.uk  Wed Apr 17 13:53:59 2019
From: s.wojtkiewicz at cs.bham.ac.uk (Stanislaw Wojtkiewicz)
Date: Wed, 17 Apr 2019 19:53:59 +0200
Subject: [Nirfast] Using NIRFAST in linux
In-Reply-To: <BN7PR04MB43884144F19B469013612337ED2B0@BN7PR04MB4388.namprd04.prod.outlook.com>
References: <BN7PR04MB43884144F19B469013612337ED2B0@BN7PR04MB4388.namprd04.prod.outlook.com>
Message-ID: <738ce9d7-1814-41b1-a5db-1d1e14901c52@cs.bham.ac.uk>

Hi Aiza

Can you confirm you still have this problem? Your error was generated on a Windows machine and the question regards Linux. The '*.mexw64' and '*.dll' files are Windows files and as such are not used in Linux. 

Cheers,
Stan

?
Regards
Stanislaw Wojtkiewicz, PhD

Sent from my mobile
---
School of Computer Science
University of Birmingham
B15 2TT?

On 15 Apr 2019, 23:37, at 23:37, "Kabeer, Aiza H." <akabeer at mgh.harvard.edu> wrote:
>Hi,
>
>I am trying to use NIRFAST in linux, however when I try to load a mesh
>I receive the following error:
>
>Invalid MEX-file
>'O:\2\users\NIRFAST\NIRFAST-9.1\toolbox\mex\distance.mexw64': Missing
>dependent shared libraries:
>'MSVCR90.dll' required by
>'O:\2\users\NIRFAST\NIRFAST-9.1\toolbox\mex\distance.mexw64'.
>
>Any pointers or help on how to use NIRFAST in linux would be
>appreciated!
>
>Thank you,
>
>Aiza K
>
>
>The information in this e-mail is intended only for the person to whom
>it is
>addressed. If you believe this e-mail was sent to you in error and the
>e-mail
>contains patient information, please contact the Partners Compliance
>HelpLine at
>http://www.partners.org/complianceline . If the e-mail was sent to you
>in error
>but does not contain patient information, please contact the sender and
>properly
>dispose of the e-mail.
>
>
>------------------------------------------------------------------------
>
>_______________________________________________
>Nirfast mailing list
>Nirfast at public.kitware.com
>https://public.kitware.com/mailman/listinfo/nirfast
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From AKABEER at mgh.harvard.edu  Wed Apr 17 13:59:49 2019
From: AKABEER at mgh.harvard.edu (Kabeer, Aiza H.)
Date: Wed, 17 Apr 2019 17:59:49 +0000
Subject: [Nirfast] Using NIRFAST in linux
In-Reply-To: <738ce9d7-1814-41b1-a5db-1d1e14901c52@cs.bham.ac.uk>
References: <BN7PR04MB43884144F19B469013612337ED2B0@BN7PR04MB4388.namprd04.prod.outlook.com>
 <738ce9d7-1814-41b1-a5db-1d1e14901c52@cs.bham.ac.uk>
Message-ID: <BN7PR04MB4388F5EED5AC75C29B439E81ED250@BN7PR04MB4388.namprd04.prod.outlook.com>

Hi Stan,

The problem is resolved, thank you for your response.

Best,

Aiza

From: Stanislaw Wojtkiewicz <s.wojtkiewicz at cs.bham.ac.uk>
Sent: Wednesday, April 17, 2019 1:54 PM
To: Kabeer, Aiza H. <AKABEER at mgh.harvard.edu>
Cc: nirfast at public.kitware.com
Subject: Re: [Nirfast] Using NIRFAST in linux


        External Email - Use Caution
Hi Aiza
Can you confirm you still have this problem? Your error was generated on a Windows machine and the question regards Linux. The '*.mexw64' and '*.dll' files are Windows files and as such are not used in Linux.
Cheers,
Stan

Regards
Stanislaw Wojtkiewicz, PhD
Sent from my mobile
---
School of Computer Science
University of Birmingham
B15 2TT
On 15 Apr 2019, at 23:37, "Kabeer, Aiza H." <akabeer at mgh.harvard.edu<mailto:akabeer at mgh.harvard.edu>> wrote:
Hi,

I am trying to use NIRFAST in linux, however when I try to load a mesh I receive the following error:

Invalid MEX-file 'O:\2\users\NIRFAST\NIRFAST-9.1\toolbox\mex\distance.mexw64': Missing dependent shared libraries:
'MSVCR90.dll' required by 'O:\2\users\NIRFAST\NIRFAST-9.1\toolbox\mex\distance.mexw64'.

Any pointers or help on how to use NIRFAST in linux would be appreciated!

Thank you,

Aiza K

The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

________________________________

Nirfast mailing list
Nirfast at public.kitware.com<mailto:Nirfast at public.kitware.com>
https://public.kitware.com/mailman/listinfo/nirfast
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From AKABEER at mgh.harvard.edu  Thu Apr 18 11:13:19 2019
From: AKABEER at mgh.harvard.edu (Kabeer, Aiza H.)
Date: Thu, 18 Apr 2019 15:13:19 +0000
Subject: [Nirfast] Using NIRFAST in linux
In-Reply-To: <BN7PR04MB43884144F19B469013612337ED2B0@BN7PR04MB4388.namprd04.prod.outlook.com>
References: <BN7PR04MB43884144F19B469013612337ED2B0@BN7PR04MB4388.namprd04.prod.outlook.com>
Message-ID: <SN6PR04MB43997DB70D49B000B07374DFED260@SN6PR04MB4399.namprd04.prod.outlook.com>

Hi,

The below problem was easily resolved; however I am unclear about the data format for spectral reconstructions. In the 2d Breast example, in the generated .paa file each wavelengths respective data columns are preceded by a column of ones. I believe this is some kind of flag related to the link, but I am not sure. Any clarifications on this would be appreciated!

Thank you,

Aiza

From: Kabeer, Aiza H.
Sent: Monday, April 15, 2019 5:28 PM
To: nirfast at public.kitware.com
Subject: Using NIRFAST in linux

Hi,

I am trying to use NIRFAST in linux, however when I try to load a mesh I receive the following error:

Invalid MEX-file 'O:\2\users\NIRFAST\NIRFAST-9.1\toolbox\mex\distance.mexw64': Missing dependent shared libraries:
'MSVCR90.dll' required by 'O:\2\users\NIRFAST\NIRFAST-9.1\toolbox\mex\distance.mexw64'.

Any pointers or help on how to use NIRFAST in linux would be appreciated!

Thank you,

Aiza K


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
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From hanenby at gmail.com  Fri Apr 26 21:41:06 2019
From: hanenby at gmail.com (Hanene BY)
Date: Fri, 26 Apr 2019 18:41:06 -0700
Subject: [Nirfast] How to simulate a specific source and detectors
 distribution
Message-ID: <6DB33762-18D1-46FA-957D-ED973542EBCD@gmail.com>

Hi 

I m interested in using Nirfast tool for DOT simulation. I m wondering is there a way to create a specific probe shape in spite of the circular designs and design a specific geometry distribution for both sources and detectors.

Thanks

Hanene