From alexis.girault at kitware.com  Wed Sep 28 10:24:37 2016
From: alexis.girault at kitware.com (Alexis Girault)
Date: Wed, 28 Sep 2016 10:24:37 -0400
Subject: [Nirfast] Meet problems when using NIRFAST slicer
In-Reply-To: <CALaCc4yNQj4=BYDHdzG1mMLf-uZ-ecy--ohbXgyKa5ad7mS7Gg@mail.gmail.com>
References: <CALaCc4yNQj4=BYDHdzG1mMLf-uZ-ecy--ohbXgyKa5ad7mS7Gg@mail.gmail.com>
Message-ID: <CAG1Y6mBpnE2siRTK0ZaYaF+jGanqG8Sq1tvRVDUvzEQ17qxkqQ@mail.gmail.com>

Hello Hong,

Thank you for reaching out about your issue. We'll investigate more on what
the NIRFAST-Slicer capabilities are related to 2D Images and we will keep
you posted.

I answered to you and attached NIRFAST mailing list, where users and
developers can communicate. You can subscribe to it at
public.kitware.com/mailman/listinfo/nirfast.

If anybody else on this mailing list has encountered similar problems and
has feedbacks/solutions, your inputs are welcome!

Best regards,

Alexis Girault
R&D Engineer in Medical Computing
Kitware, Inc.

http://www.kitware.com
(919) 969-6990 x325

On Fri, Sep 23, 2016 at 5:47 AM, Hong Yang <cindyyanghong at gmail.com> wrote:

> Dear Mr. Girault,
>
> I am Hong Yang, a phd student from Technical university of Munich.
>
> I want to use the NIRFAST slicer to* simulate the light fluence model *within
> my sample. However the software did not work.
>
> *In my case, I only have one 2D image and the original data is saved with
> Matlab matrix. What I did is saving this matrix to an 'tif' image and load
> this tif image to the slicer.*
>
> *The following are my questions:*
> Can NIRFAST slicer work for single 2D image case?
> If yes,  I try to do image crop and segmentation with the slicer, it
> crashed down every time I tried to crop the image. And if I skip the crop
> step and go to do segmentation, the label does not work. How can I solve
> this?
>
> Thank you for your help.
>
> Best
> Hong
>
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