From mbo at keosys.com Wed Jul 2 03:29:13 2014 From: mbo at keosys.com (Malik Olivier Boussejra) Date: Wed, 02 Jul 2014 09:29:13 +0200 Subject: [Midas] DICOM uploader issue In-Reply-To: <53B2B551.8070205@eleves.ec-nantes.fr> References: <53B2B551.8070205@eleves.ec-nantes.fr> Message-ID: <53B3B4C9.4030705@keosys.com> Hello, I've been trying to use the Midas Platform for DICOM image exchange. The DICOM uploader doesn't seem to work. The server is a Ubuntu 14.04 machine. I've tried with two different Ubuntu Server 14.04 (one is a virtual machine on my desktop, the other one is another desktop computer). Thank you for your help. Malik Olivier Boussejra -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: image/png Size: 35189 bytes Desc: not available URL: From patrick.reynolds at kitware.com Mon Jul 7 09:23:39 2014 From: patrick.reynolds at kitware.com (Patrick Reynolds) Date: Mon, 7 Jul 2014 09:23:39 -0400 Subject: [Midas] DICOM uploader issue In-Reply-To: <53B3B4C9.4030705@keosys.com> References: <53B2B551.8070205@eleves.ec-nantes.fr> <53B3B4C9.4030705@keosys.com> Message-ID: Hi Malik, I'm sorry to hear that you're having issues with the DICOM uploader. I have a few questions to help us get to the bottom of this. Is there any output in the Midas or Apache error logs? Also, are the paths to DCMTK tools configured properly with the Midas Admin Dashboard? Thanks, Patrick Reynolds Technical Leader Kitware, Inc. 919 869 8848 On Wed, Jul 2, 2014 at 3:29 AM, Malik Olivier Boussejra wrote: > Hello, > I've been trying to use the Midas Platform for DICOM image exchange. > The DICOM uploader doesn't seem to work. > The server is a Ubuntu 14.04 machine. > > > > I've tried with two different Ubuntu Server 14.04 (one is a virtual > machine on my desktop, the other one is another desktop computer). > > > Thank you for your help. > > > Malik Olivier Boussejra > > _______________________________________________ > Midas mailing list > Midas at public.kitware.com > http://public.kitware.com/mailman/listinfo/midas > > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: image/png Size: 35189 bytes Desc: not available URL: From mbo at keosys.com Tue Jul 8 04:00:00 2014 From: mbo at keosys.com (Malik Olivier Boussejra) Date: Tue, 08 Jul 2014 10:00:00 +0200 Subject: [Midas] DICOM uploader issue In-Reply-To: References: <53B2B551.8070205@eleves.ec-nantes.fr> <53B3B4C9.4030705@keosys.com> Message-ID: <53BBA500.40405@keosys.com> Hi Patrick, In fact, I tried again. I'll try to explain as best what happens. The error I stated only happens when I check "Anonymize files before uploading" or when the selected folder does not contain any file (only other folders). I'm pretty sure the DCMTK tools are configured properly. Here are all the logs (in log/development.log) : URL: http://192.168.10.127/modules/dicomanonymize/public/java/dicomupload/lib/clibwrapper_jiio.jar Server IP: 192.168.10.127 User agent: Mozilla/4.0 (Windows 7 6.1) Java/1.7.0_60 Server time: 2014-07-08 09:49:04 Parameters (post): Array ( ) Parameters (get): Array ( ) 2014-07-08T09:49:06+02:00 INFO (6): ItemModelBase::mergeItems User unable to merge item because it does not exist. 2014-07-08T09:49:06+02:00 WARN (4): Server IP: 192.168.10.127 Client IP: 192.168.10.191 User agent: Mozilla/4.0 (Windows 7 6.1) Java/1.7.0_60 Server time: 2014-07-08 09:49:06 RequestURI: /item/merge?outputItemId&items=&name=DICOMUpload_1404805748731 Message: Insufficient permissions to merge these items. Trace: #0 /home/keo072/Midas3/core/controllers/ItemController.php(596): ItemModelBase->mergeItems(Array, 'DICOMUpload_140...', Object(UserDao), NULL) #1 /home/keo072/Midas3/library/Zend/Controller/Action.php(516): ItemController->mergeAction() #2 /home/keo072/Midas3/library/Zend/Controller/Dispatcher/Standard.php(295): Zend_Controller_Action->dispatch('mergeAction') #3 /home/keo072/Midas3/library/Zend/Controller/Front.php(954): Zend_Controller_Dispatcher_Standard->dispatch(Object(Zend_Controller_Request_Http), Object(Zend_Controller_Response_Http)) #4 /home/keo072/Midas3/library/Zend/Application/Bootstrap/Bootstrap.php(97): Zend_Controller_Front->dispatch() #5 /home/keo072/Midas3/library/Zend/Application.php(366): Zend_Application_Bootstrap_Bootstrap->run() #6 /home/keo072/Midas3/index.php(65): Zend_Application->run() #7 {main} Request data: array ( 'controller' => 'item', 'action' => 'merge', 'module' => 'default', 'outputItemId' => '', 'items' => '', 'name' => 'DICOMUpload_1404805748731', ) Session data: Dao: UserDao::__set_state(array( '_model' => 'User', 'key' => NULL, '_key' => 'user_id', 'saved' => true, 'user_id' => '1', 'firstname' => 'Malik Olivier', 'lastname' => 'Boussejra', 'email' => 'mbo at keosys.com', 'thumbnail' => NULL, 'company' => NULL, 'hash_alg' => 'sha256', 'salt' => 'oWAlWSEJLwmk1PBbxNcaADsU1CkLRyv6', 'creation' => '2014-06-27 08:36:59', 'folder_id' => '1', 'admin' => '1', 'privacy' => '0', 'view' => '2', 'uuid' => '53ad656c059e9825a051d9c872d381c3f47433c8ef182', 'city' => '', 'country' => '', 'website' => '', 'biography' => '', 'dynamichelp' => '0', )) JavaUpload: stdClass::__set_state(array( 'parent' => '2', 'license' => '1', )) Last database query: SELECT `item`.* FROM `item` WHERE (item_id = '15') LIMIT 1 By the way, from time to time, the logs don't display properly in the admin view: It's loading endlessly. Thank you. On 07/07/2014 15:23, Patrick Reynolds wrote: > Hi Malik, > > I'm sorry to hear that you're having issues with the DICOM uploader. I > have a few questions to help us get to the bottom of this. > > Is there any output in the Midas or Apache error logs? Also, are the > paths to DCMTK tools configured properly with the Midas Admin Dashboard? > > Thanks, > Patrick Reynolds > Technical Leader > Kitware, Inc. > 919 869 8848 > > > On Wed, Jul 2, 2014 at 3:29 AM, Malik Olivier Boussejra > > wrote: > > Hello, > I've been trying to use the Midas Platform for DICOM image exchange. > The DICOM uploader doesn't seem to work. > The server is a Ubuntu 14.04 machine. > > > > I've tried with two different Ubuntu Server 14.04 (one is a > virtual machine on my desktop, the other one is another desktop > computer). > > > Thank you for your help. > > > Malik Olivier Boussejra > > > _______________________________________________ > Midas mailing list > Midas at public.kitware.com > http://public.kitware.com/mailman/listinfo/midas > > Malik Olivier Boussejra Designed with WiseStamp - Get yours -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: dbgedhbh.png Type: image/png Size: 21187 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: beibagih.png Type: image/png Size: 4718 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: image/png Size: 35189 bytes Desc: not available URL: From Brian.Chapman at utah.edu Wed Jul 16 18:20:22 2014 From: Brian.Chapman at utah.edu (Brian E Chapman) Date: Wed, 16 Jul 2014 22:20:22 +0000 Subject: [Midas] Installing Midas3.2.8 on CentOS 6.5 Message-ID: Hello, I?m trying to install Midas on CentOS 6.5. I followed the install instructions on the midas wiki. I have Midas installed at /opt/Midas3 and all files in the Midas3 directory structure are owned by apache. When I point my web browser to localhost/midas/install, I get the error message: ?To use midas Platform, the folder "/opt/Midas3/core/configs? must be writable by your web server.? Any ideas as to what the problem is here, since the files are clearly owned by apache? Could there be an issue with symlinks/redirects/etc. in the httpd.conf file? Brian ? Brian E. Chapman, Ph.D. Associate Professor Department of Radiology University of Utah -------------- next part -------------- An HTML attachment was scrubbed... URL: From Brian.Chapman at utah.edu Wed Jul 16 18:33:08 2014 From: Brian.Chapman at utah.edu (Brian E Chapman) Date: Wed, 16 Jul 2014 22:33:08 +0000 Subject: [Midas] Installing Midas3.2.8 on CentOS 6.5 Message-ID: I had to disable selinux. Then things worked fine. Brian From: Brian Chapman > Date: Wednesday, July 16, 2014 at 5:20 PM To: "midas at public.kitware.com" > Subject: [Midas] Installing Midas3.2.8 on CentOS 6.5 Hello, I?m trying to install Midas on CentOS 6.5. I followed the install instructions on the midas wiki. I have Midas installed at /opt/Midas3 and all files in the Midas3 directory structure are owned by apache. When I point my web browser to localhost/midas/install, I get the error message: ?To use midas Platform, the folder "/opt/Midas3/core/configs? must be writable by your web server.? Any ideas as to what the problem is here, since the files are clearly owned by apache? Could there be an issue with symlinks/redirects/etc. in the httpd.conf file? Brian ? Brian E. Chapman, Ph.D. Associate Professor Department of Radiology University of Utah -------------- next part -------------- An HTML attachment was scrubbed... URL: From patrick.reynolds at kitware.com Mon Jul 28 13:54:19 2014 From: patrick.reynolds at kitware.com (Patrick Reynolds) Date: Mon, 28 Jul 2014 13:54:19 -0400 Subject: [Midas] Master Force-Pushed Message-ID: Hi Folks, We had a minor issue that required a force-push of master. Everything should be fine unless you've pulled master in the last 12 hours. Sorry for the inconvenience. Thanks, Patrick Reynolds Technical Leader Kitware, Inc. 919 869 8848 -------------- next part -------------- An HTML attachment was scrubbed... URL: From mbo at keosys.com Wed Jul 2 03:29:13 2014 From: mbo at keosys.com (Malik Olivier Boussejra) Date: Wed, 02 Jul 2014 09:29:13 +0200 Subject: [Midas] DICOM uploader issue In-Reply-To: <53B2B551.8070205@eleves.ec-nantes.fr> References: <53B2B551.8070205@eleves.ec-nantes.fr> Message-ID: <53B3B4C9.4030705@keosys.com> Hello, I've been trying to use the Midas Platform for DICOM image exchange. The DICOM uploader doesn't seem to work. The server is a Ubuntu 14.04 machine. I've tried with two different Ubuntu Server 14.04 (one is a virtual machine on my desktop, the other one is another desktop computer). Thank you for your help. Malik Olivier Boussejra -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: image/png Size: 35189 bytes Desc: not available URL: From patrick.reynolds at kitware.com Mon Jul 7 09:23:39 2014 From: patrick.reynolds at kitware.com (Patrick Reynolds) Date: Mon, 7 Jul 2014 09:23:39 -0400 Subject: [Midas] DICOM uploader issue In-Reply-To: <53B3B4C9.4030705@keosys.com> References: <53B2B551.8070205@eleves.ec-nantes.fr> <53B3B4C9.4030705@keosys.com> Message-ID: Hi Malik, I'm sorry to hear that you're having issues with the DICOM uploader. I have a few questions to help us get to the bottom of this. Is there any output in the Midas or Apache error logs? Also, are the paths to DCMTK tools configured properly with the Midas Admin Dashboard? Thanks, Patrick Reynolds Technical Leader Kitware, Inc. 919 869 8848 On Wed, Jul 2, 2014 at 3:29 AM, Malik Olivier Boussejra wrote: > Hello, > I've been trying to use the Midas Platform for DICOM image exchange. > The DICOM uploader doesn't seem to work. > The server is a Ubuntu 14.04 machine. > > > > I've tried with two different Ubuntu Server 14.04 (one is a virtual > machine on my desktop, the other one is another desktop computer). > > > Thank you for your help. > > > Malik Olivier Boussejra > > _______________________________________________ > Midas mailing list > Midas at public.kitware.com > http://public.kitware.com/mailman/listinfo/midas > > -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: image/png Size: 35189 bytes Desc: not available URL: From mbo at keosys.com Tue Jul 8 04:00:00 2014 From: mbo at keosys.com (Malik Olivier Boussejra) Date: Tue, 08 Jul 2014 10:00:00 +0200 Subject: [Midas] DICOM uploader issue In-Reply-To: References: <53B2B551.8070205@eleves.ec-nantes.fr> <53B3B4C9.4030705@keosys.com> Message-ID: <53BBA500.40405@keosys.com> Hi Patrick, In fact, I tried again. I'll try to explain as best what happens. The error I stated only happens when I check "Anonymize files before uploading" or when the selected folder does not contain any file (only other folders). I'm pretty sure the DCMTK tools are configured properly. Here are all the logs (in log/development.log) : URL: http://192.168.10.127/modules/dicomanonymize/public/java/dicomupload/lib/clibwrapper_jiio.jar Server IP: 192.168.10.127 User agent: Mozilla/4.0 (Windows 7 6.1) Java/1.7.0_60 Server time: 2014-07-08 09:49:04 Parameters (post): Array ( ) Parameters (get): Array ( ) 2014-07-08T09:49:06+02:00 INFO (6): ItemModelBase::mergeItems User unable to merge item because it does not exist. 2014-07-08T09:49:06+02:00 WARN (4): Server IP: 192.168.10.127 Client IP: 192.168.10.191 User agent: Mozilla/4.0 (Windows 7 6.1) Java/1.7.0_60 Server time: 2014-07-08 09:49:06 RequestURI: /item/merge?outputItemId&items=&name=DICOMUpload_1404805748731 Message: Insufficient permissions to merge these items. Trace: #0 /home/keo072/Midas3/core/controllers/ItemController.php(596): ItemModelBase->mergeItems(Array, 'DICOMUpload_140...', Object(UserDao), NULL) #1 /home/keo072/Midas3/library/Zend/Controller/Action.php(516): ItemController->mergeAction() #2 /home/keo072/Midas3/library/Zend/Controller/Dispatcher/Standard.php(295): Zend_Controller_Action->dispatch('mergeAction') #3 /home/keo072/Midas3/library/Zend/Controller/Front.php(954): Zend_Controller_Dispatcher_Standard->dispatch(Object(Zend_Controller_Request_Http), Object(Zend_Controller_Response_Http)) #4 /home/keo072/Midas3/library/Zend/Application/Bootstrap/Bootstrap.php(97): Zend_Controller_Front->dispatch() #5 /home/keo072/Midas3/library/Zend/Application.php(366): Zend_Application_Bootstrap_Bootstrap->run() #6 /home/keo072/Midas3/index.php(65): Zend_Application->run() #7 {main} Request data: array ( 'controller' => 'item', 'action' => 'merge', 'module' => 'default', 'outputItemId' => '', 'items' => '', 'name' => 'DICOMUpload_1404805748731', ) Session data: Dao: UserDao::__set_state(array( '_model' => 'User', 'key' => NULL, '_key' => 'user_id', 'saved' => true, 'user_id' => '1', 'firstname' => 'Malik Olivier', 'lastname' => 'Boussejra', 'email' => 'mbo at keosys.com', 'thumbnail' => NULL, 'company' => NULL, 'hash_alg' => 'sha256', 'salt' => 'oWAlWSEJLwmk1PBbxNcaADsU1CkLRyv6', 'creation' => '2014-06-27 08:36:59', 'folder_id' => '1', 'admin' => '1', 'privacy' => '0', 'view' => '2', 'uuid' => '53ad656c059e9825a051d9c872d381c3f47433c8ef182', 'city' => '', 'country' => '', 'website' => '', 'biography' => '', 'dynamichelp' => '0', )) JavaUpload: stdClass::__set_state(array( 'parent' => '2', 'license' => '1', )) Last database query: SELECT `item`.* FROM `item` WHERE (item_id = '15') LIMIT 1 By the way, from time to time, the logs don't display properly in the admin view: It's loading endlessly. Thank you. On 07/07/2014 15:23, Patrick Reynolds wrote: > Hi Malik, > > I'm sorry to hear that you're having issues with the DICOM uploader. I > have a few questions to help us get to the bottom of this. > > Is there any output in the Midas or Apache error logs? Also, are the > paths to DCMTK tools configured properly with the Midas Admin Dashboard? > > Thanks, > Patrick Reynolds > Technical Leader > Kitware, Inc. > 919 869 8848 > > > On Wed, Jul 2, 2014 at 3:29 AM, Malik Olivier Boussejra > > wrote: > > Hello, > I've been trying to use the Midas Platform for DICOM image exchange. > The DICOM uploader doesn't seem to work. > The server is a Ubuntu 14.04 machine. > > > > I've tried with two different Ubuntu Server 14.04 (one is a > virtual machine on my desktop, the other one is another desktop > computer). > > > Thank you for your help. > > > Malik Olivier Boussejra > > > _______________________________________________ > Midas mailing list > Midas at public.kitware.com > http://public.kitware.com/mailman/listinfo/midas > > Malik Olivier Boussejra Designed with WiseStamp - Get yours -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: dbgedhbh.png Type: image/png Size: 21187 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: beibagih.png Type: image/png Size: 4718 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: image/png Size: 35189 bytes Desc: not available URL: From Brian.Chapman at utah.edu Wed Jul 16 18:20:22 2014 From: Brian.Chapman at utah.edu (Brian E Chapman) Date: Wed, 16 Jul 2014 22:20:22 +0000 Subject: [Midas] Installing Midas3.2.8 on CentOS 6.5 Message-ID: Hello, I?m trying to install Midas on CentOS 6.5. I followed the install instructions on the midas wiki. I have Midas installed at /opt/Midas3 and all files in the Midas3 directory structure are owned by apache. When I point my web browser to localhost/midas/install, I get the error message: ?To use midas Platform, the folder "/opt/Midas3/core/configs? must be writable by your web server.? Any ideas as to what the problem is here, since the files are clearly owned by apache? Could there be an issue with symlinks/redirects/etc. in the httpd.conf file? Brian ? Brian E. Chapman, Ph.D. Associate Professor Department of Radiology University of Utah -------------- next part -------------- An HTML attachment was scrubbed... URL: From Brian.Chapman at utah.edu Wed Jul 16 18:33:08 2014 From: Brian.Chapman at utah.edu (Brian E Chapman) Date: Wed, 16 Jul 2014 22:33:08 +0000 Subject: [Midas] Installing Midas3.2.8 on CentOS 6.5 Message-ID: I had to disable selinux. Then things worked fine. Brian From: Brian Chapman > Date: Wednesday, July 16, 2014 at 5:20 PM To: "midas at public.kitware.com" > Subject: [Midas] Installing Midas3.2.8 on CentOS 6.5 Hello, I?m trying to install Midas on CentOS 6.5. I followed the install instructions on the midas wiki. I have Midas installed at /opt/Midas3 and all files in the Midas3 directory structure are owned by apache. When I point my web browser to localhost/midas/install, I get the error message: ?To use midas Platform, the folder "/opt/Midas3/core/configs? must be writable by your web server.? Any ideas as to what the problem is here, since the files are clearly owned by apache? Could there be an issue with symlinks/redirects/etc. in the httpd.conf file? Brian ? Brian E. Chapman, Ph.D. Associate Professor Department of Radiology University of Utah -------------- next part -------------- An HTML attachment was scrubbed... URL: From patrick.reynolds at kitware.com Mon Jul 28 13:54:19 2014 From: patrick.reynolds at kitware.com (Patrick Reynolds) Date: Mon, 28 Jul 2014 13:54:19 -0400 Subject: [Midas] Master Force-Pushed Message-ID: Hi Folks, We had a minor issue that required a force-push of master. Everything should be fine unless you've pulled master in the last 12 hours. Sorry for the inconvenience. Thanks, Patrick Reynolds Technical Leader Kitware, Inc. 919 869 8848 -------------- next part -------------- An HTML attachment was scrubbed... URL: