[ITK-users] [ITK] New Submission: ND morphological contour interpolation

[Andras Lasso]

It should be easy to write an executable like that. It can be either a standalone executable, or – if you want to use other effects or you don’t want to set up a build environment on multiple platforms and create distribution mechanism (software download page and/or app store) – then you can do it using 3D Slicer and a small Python script. See for example how to apply a Segment Editor effect in a script here: https://www.slicer.org/wiki/Documentation/Nightly/ScriptRepository#How_to_run_segment_editor_effects_from_a_script

How the rest of your pipeline is implemented (image loading, visualization, contouring, etc)?

Andras

From: thanos thanos [mailto:thanosxania at gmail.com]
Sent: Thursday, September 21, 2017 8:22 AM
To: Andras Lasso <lasso at queensu.ca>
Cc: insight-users at itk.org
Subject: Re: [ITK] [ITK-users] New Submission: ND morphological contour interpolation

Hello Andras,

Thank you very much for your answer. I already tried Slicer and the Segment Editor and it works fine. I was wondering if I can make an executable that I could use for my data (for example an .nrrd segmented volume with some slices missing).

Best regards,
Thanos

On Wed, Sep 20, 2017 at 6:25 PM, Andras Lasso <lasso at queensu.ca<mailto:lasso at queensu.ca>> wrote:
If you want to see what the morphological contour interpolation filter can do, then download nightly version of 3D Slicer (www.slicer.org<https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.slicer.org&data=02%7C01%7Classo%40queensu.ca%7Ca08e625765f04a0fac1408d500eb5119%7Cd61ecb3b38b142d582c4efb2838b925c%7C1%7C0%7C636415933050412732&sdata=ADd9uXu9%2FX%2BkJr5FW1P1vKgLtvzgpx8b8tQtel%2FWgE4%3D&reserved=0>) and try "Fill between slices" effect. Some information about the tool is available at  http://slicer.readthedocs.io/en/latest/user_guide/module_segmenteditor.html<https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fslicer.readthedocs.io%2Fen%2Flatest%2Fuser_guide%2Fmodule_segmenteditor.html&data=02%7C01%7Classo%40queensu.ca%7Ca08e625765f04a0fac1408d500eb5119%7Cd61ecb3b38b142d582c4efb2838b925c%7C1%7C0%7C636415933050412732&sdata=Dz2kfKpmJrib0je7bRayRVmqmCTLvmAbnQUL6eu92sU%3D&reserved=0>, but if you are stuck at any point then you can ask help at https://discourse.slicer.org<https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fdiscourse.slicer.org&data=02%7C01%7Classo%40queensu.ca%7Ca08e625765f04a0fac1408d500eb5119%7Cd61ecb3b38b142d582c4efb2838b925c%7C1%7C0%7C636415933050412732&sdata=SWrqY0hKYfYPc7UhOP%2FuAjl2WZDM%2F2pgEusdpmNG1Pk%3D&reserved=0> - all questions are answered, typically within a few hours.

Andras

-----Original Message-----
From: Community [mailto:community-bounces at itk.org<mailto:community-bounces at itk.org>] On Behalf Of thanos
Sent: Wednesday, September 20, 2017 10:21 AM
To: insight-users at itk.org<mailto:insight-users at itk.org>
Subject: Re: [ITK] [ITK-users] New Submission: ND morphological contour interpolation

Hello,

Is there maybe an example for the morphological contour interpolation?
I am working on Matlab for the segmentation of some 3D data and since I am currently segmenting semi-automatically slice by slice, it would be great if I could use this class..
I also have a quite silly question.. I am aware about the "test" folder and data but I don't really understand what is used for... I had a look on the Software Guide on the chapter "How to create a module" but I still don't get it..

Thank you very much.

Best regards,
Thanos



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