[ITK-users] [ANN] ITK 4.11 Release Candidate 2 is ready for testing!
Matt McCormick
matt.mccormick at kitware.com
Mon Jan 16 16:18:18 EST 2017
On behalf of the Insight Toolkit community, we are proud to announce
that ITK 4.11 release candidate 2 has been tagged and is available for
testing! Please take this opportunity to test the new features in the
release candidate.
To obtain the source code, use the links:
https://github.com/Kitware/ITK/archive/v4.11rc02.zip
https://github.com/Kitware/ITK/archive/v4.11rc02.tar.gz
or
git clone https://itk.org/ITK.git
cd ITK
git checkout -q --detach v4.11rc02
For more details, please see the Git documentation [1].
A few selected highlights for this release:
- Remote Modules were added to: perturb mesh vertices with additive
gaussian noise, accurately benchmark computational performance,
perform principal components analysis of scalar, vector, and mesh
vertex data, create a run-length encoded memory compression scheme for
itk::Image, run N-D morphological contour interpolation, interpolate
multi-label images, iterate over multiple images simultaneously, and
compute inverse displacement fields.
- NumPy bridge support is now enabled by default with NumPy array
views of multi-component images and VNL vectors and matrices.
- Internal HDF5 was updated to the latest upstream version along
with a number of other third-party libraries.
This release introduces a new template class export specification
macro, ITK_TEMPLATE_EXPORT. The macro should be used with templated
classes to address failing dynamic_cast's and exception catching
across binaries on Mac OSX.
Bugs were addressed and improvements were made to how the
pseudo-random number generator is used. Tests that rely on the random
number generator should explicitly set the global seed at start:
itk::Statistics::MersenneTwisterRandomVariateGenerator::GetInstance()->SetSeed(
121212 );
To improve randomness, new instances of the generator start from a
different seed; some minor differences in the output of algorithms
that uses the generator, like mutual information metrics, should be
expected.
Additionally, output may change for registration with composite affine
transforms; the v4 registration framework now uses corner sampling as
opposed to random sampling to estimate their parameter scales.
Please test the release candidate and share your experiences on the
mailing list, issue tracker, and Gerrit Code Review.
An Experimental build, which demonstrates how the test suite performs
on your local build system, can be submitted to the dashboard [2]
with:
mkdir ../ITK-build
cd ../ITK-build
cmake ../ITK
ctest -j 4 -M Experimental -T Configure -T Build -T Test -T Submit
Visual Studio builds must also add “-C Release” to the ctest command.
Notify the mailing list if there are any unexpected failures. Testing
your own applications against the RC is also appreciated.
Congratulations to the 31 contributors to this release. We would
especially like to recognize the new contributors: Hastings Greer,
Gilles Filippini, Thien Nguyen, Caspar Goch, Mayeul Chassagnard,
Somesh Kashyap, Simon Rit, Pierre Barbier de Reuille, and Maeliss
Jallais.
The 4.11.0 final release is scheduled for January 23rd.
[1] http://www.itk.org/Wiki/ITK/Git
[2] http://open.cdash.org/index.php?project=Insight
New Features
------------
* Wrapping Improvements
- Python GetArrayFromImage() and GetImageFromArray() from
ITKBridgeNumPy are directly accessible from the Python itk namespace.
- The itk package loads much faster: individual modules are loaded
only when required.
- Conversion of ITK images from and to NumPy array using Bridge
NumPy supports RGB, RGBA, and Vector images.
- VNL vectors and VNL matrices can be converted from and to NumPy
objects with respectively the new couple of functions
GetArrayFromVnlVector()/GetVnlVectorFromArray() and
GetArrayFromVnlMatrix()/GetVnlMatrixFromArray()
- The global timestamp is used across all ITK Python modules when
built statically
- Wrap additional classes such as KernelFunctionBase
- itk_python_add_test CMake function added for Python script testing
in ITK modules
* New Remote Modules
- DVMeshNoise
- Perturbing mesh vertices with additive gaussian noise
- http://hdl.handle.net/10380/3567
- PerformanceBenchmarking
- Accurate benchmarking of computational performance
- http://hdl.handle.net/10380/3557
- PrincipalComponentsAnalysis
- Principal components analysis of scalar, vector, and mesh vertex data
- http://hdl.handle.net/10380/3386
- RLEImage
- Run-length encoded memory compression scheme for itk::Image
- http://hdl.handle.net/10380/3562
- MorphologicalContourInterpolation
- N-D morphological contour interpolation
- http://hdl.handle.net/10380/3563
- GenericLabelInterpolator
- A generic interpolator for multi-label images
- http://hdl.handle.net/10380/3506
- MultipleImageIterator
- Iterate over multiple images simultaneously
- http://hdl.handle.net/10380/3455
- FixedPointInverseDisplacementField
- Computes inverse displacement field
- http://hdl.handle.net/10380/3222
* Core Improvements
- New ITK_TEMPLATE_EXPORT for templated classes resolves
cross-binary dynamic_cast on Mac OSX
- New MersenneTwisterRandomVariateGenerator instances are
initialized with different seeds
- Use compiler feature detection in CMake for C++11 features, etc.
- New CMake macro itk_module_add_library for creating libraries in ITK modules
- Improved support for ccache and distcc with
CMAKE_<LANG>_COMPILER_LAUNCHER (CMake >=3.4 required)
- Support for .sha512 ExternalData content links
- GitHub Pages and data.kitware.com ExternalData repositories added
- GPGPU system support for C++11
- Support of new compilers: Visual Studio 15 and XCode 8.2.1
(clang-800.0.42.1)
* Filtering Improvements
- HessianToObjectnessMeasure moved out of the ITKReview module
- New UnsharpMaskImageFilter for image edge enhancement
* IO Improvements
- TransformFactory class has been moved to a separate module
- Spline order added to BSplineTransform identifier
- Improved NIFTI orientation support
* Documentation Improvements
- Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
* Third Party Library Updates
- pygccxml updated to v1.8.0
- VNL updated to latest upstream (2016.07.06)
- SWIG updated to v3.0.11
- KWSys updated to latest upstream (2016.11.21)
- HDF5 updated to v1.8.17
- SCIFIO updated to latest upstream (2016.12.01)
- DCMTK updated to 3.6.1_20121012
- CastXML to latest upstream (2016.01.28)
* Improved Code Coverage -- we are at 85.44%!
- Jon Haitz-Legarreta's extensive code coverage improvements
- https://blog.kitware.com/why-should-we-spend-time-writing-tests/
* *Lots* of important bug fixes
* And much more! See details in the log below.
Changes from v4.11rc01 to v4.11rc02
-----------------------------------
Bradley Lowekamp (5):
BUG: Remove unused SimpleImageRegistrationTest baselines
ENH: Expose GetNextSeed method in MersenneTwiseter Generator
BUG: Add option for fixed seed or wall clock seed for sampling
BUG: Use metric random seed in v3 examples
BUG: Prefer setting seed at algorithm in "v4" tests.
Francois Budin (3):
ENH: Update BridgeNumPy to latest version on 2017.01.08 to address ITK-3511
BUG: Extra \$ in doxygen comment
BUG: Binary include directory added only if enabled shared
Jon Haitz Legarreta (2):
DOC: Document itkLabelOverlapMeasuresImageFilter methods.
DOC: Fix ITKImageNoise filters' doc TeX errors.
Matthew McCormick (1):
BUG: Remove invalid ImageRegistration4Test.png.sha512
Max Smolens (1):
DOC: Fix itkUnsharpMaskImageFilter documentation typos
Simon Rit (1):
BUG: ITK-based software was crasing when thread creation failed
Changes from v4.10.0 to v4.11rc01
---------------------------------
Bill Lorensen (4):
COMP: Restore support for clang 3.0 compiler
COMP: Consistent use of ModifiedTimeType
ENH: Bump WikiExamples remote module version
ENH: Bump WikiExamples version
Bradley Lowekamp (57):
ENH: Add registered TrasformIO's to exception
ENH: Use template or constant for loop stop condition
ENH: Updating SWIG version to 3.0.9
COMP: Address VS9 ambiguous std::abs call in Haung calculator
COMP: Fix undefined NumericTraits::Zero and One errors with mingw64
BUG: Fix segfault if ~CleanUpObjectFactory called multiple times
BUG: Address itkHDF5ImageIO test failures for mingw64
BUG: demonstrate dynamic_cast failure when reading transforms
BUG: Address itkHDF5ImageIO test failures for mingw64
ENH: Updating SWIG version to 3.0.10
ENH: Enable CMP0063 New behavior
COMP: Enable hidden visibility property with vxl static libraries
COMP: Enable hidden visibility property with HDF5 static libraries
COMP: Enable hidden visibility property with HDF5 static libraries
BUG: Match Add2 function to AddImageFilter documentation
ENH: Improve support for std::complex with PowImageFilter
ENH: Explicitly mark required files for dependent tests
COMP: Bypass XCode 7.3,8 internal compilation error
COMP: Address CMake configuration error with itkJPEG2000Test03 property
BUG: Correct test's REQUIRED_FILES to only the input.
ENH: move HessianToObjectnessMeasure filter out of Review
ENH: Separate TransformFactory class into separate module
DOC: Add links between similar label to rgb filters
ENH: Separate data from function calls
COMP: Fix changed Graft method
ENH: Reduce template dependencies on CalculateRotationMatrix
ENH: Add Functor Accessors to LabelMapToRGB filter
BUG: Enable VirtualDomain and FixedTransform in RegMethv4
BUG: Use BSpline Order 3 for 2D in transform factory.
ENH: Add spline order to BSplineTransform's string id
ENH: Adding initial CircleCi configuration file
COMP: Fix float to unsigned integer conversion warnings
BUG: Include installed modules in ITK_MODULES_ENABLED
COMP: Address CMake error that ITKGPUCommon is not in export
COMP: Address wrong library types with VS and shared libraries
BUG: Ensure CreateImageIO is concurrent thread safe
ENH: Mark HDF5 CMake options as internal
COMP: Add template export declaration for ParametricPath
COMP: Correct TEMPLATE_EXPLICIT definition in Path module
ENH: Factor out common code in the TrasformFactoryBase registration
ENH: Add CMake variable for max transform dimension, defaults 4
ENH: Create CMake module to check for private RTTI compatibility
ENH: Improving setting of default ITK_TEMPATE_VISIBILITY_DEFAULT
COMP: Correct ifndef value to allow user defined ITK_TEMPLATE_EXPORT
BUG: Add explicit instantiate for ObjectToObjectOptimizerBase
COMP: Use add_definitions for CMake 2.8.9 compatibility
COMP: Add warning suppression for distcc warning
ENH: Explicitly instantiate the optimizer base over float
BUG: Use IsLinear to check if transform is "affine"
ENH: Remove unneeded includes of random iterator header
ENH: Improve thread-safety for Generator, and unique New sequence
ENH: Do not use global random generator
BUG: Update v3 registration metrics to use local seed
ENH: Prefer setting local seed over global in tests.
ENH: Update SWIG to latest 3.0.11 release
BUG: relax testing parameters for v3 translation registration
BUG: Restore baseline for debug registration
Caspar Goch (2):
BUG: Use printable type for RGBA pixel ostream for ITK-3501
STYLE: Remove extra space for ITK-3501
Christina Rossmanith (1):
DOC: Added more details to the class Doxygen documentation.
Davis Vigneault (2):
COMP: VCL_DEFINE_SPECIALIZATION not defined
ENH: Add remote module DVMeshNoise
Dženan Zukić (27):
BUG: Fixing CID-1355433 (IDENTICAL_BRANCHES)
ENH: Adding MultipleImageIterator as a remote module
COMP: enables TBB 4.4 back-end for VTK7's SMP
COMP: enabling position independent code flag for FFTW
ENH: adding configuration file for code reformatting tool clang-format
ENH: Updating hooks to work with Windows/TortoiseGit/KDiff3
COMP: Fixing -fPIC flag passing with Ninja build system
ENH: Adding RLEImage as a remote module
ENH: Updating uncrustify configuration to current git version
STYLE: better compliance with ITK style
STYLE: A new option in uncrustify, updating the config file accordingly
ENH: Adding MorphologicalContourInterpolation as a remote module
ENH: improving documentation
BUG: fixing buffer growing endlessly, as reported by Timothee Evain
BUG: fixing buffer growing endlessly, as reported by Timothee Evain
STYLE: default uncrustify configuration file is less aggressive
COMP: Fixing warning
COMP: VS15 compiler fix
BUG: casting -9 to unsigned produced unwanted result
BUG: Ensuring consistency between debug and release
COMP: Updating LesionSizingToolkit after some recent compile fixes
COMP: respect option METAIO_USE_NAMESPACE
ENH: updating version of AnisotropicDiffusionLBR
ENH: adding UnsharpMaskingImageFilter
COMP: explicitly cast to output type
BUG: double call to update would cause empty output image
ENH: Updating RLEImage remote module. Change-log:
Eugene Prilepin (4):
ENH: Add the "ITK_USE_GPU" to ITK Config
BUG: Fix API for set/get "LaplacianImageFilter" object
ENH: Add support of images types with the 'CovariantVector' pixel type
ENH: Add python test for the 'GradientVectorFlowImageFilter' wrap
Francois Budin (52):
ENH: Adding GetArrayFromImage in python itk namespace
ENH: Adding GetImageFromArray in python itk namespace
ENH: *_WRAP_* variable per external module
BUG: ImportImageFilter not responsible of memory management
ENH: New remote module GenericLabelInterpolator
DOC: SetNumberOfOutputs had wrong comment
BUG: lazyAttributes dictionary keys could be over-ridden
BUG: lazyAttributes dictionary keys could be over-ridden
BUG: Fix recent update of HDF5 (1.8.17)
ENH: Update SCIFIO to latest version on 08/23/2016
ENH: Addition of the remote module FixedPointInverseDisplacementField
ENH: Update SCIFIO to latest version on 08/29/2016
BUG: Path to commit was relative instead of absolute
ENH: Path to SetupForDevelopment is relative, not absolute
BUG: LSMImageIO write function was not checking image dimension
BUG: LSMImageIO was not checking correctly image dimension
BUG: Missing associated test data
BUG: Missing associated test data
ENH: Bump CMakeLists.txt version to 4.10.1.
BUG: Quotes are not escaped in configured cmake file
ENH: Improving API of Graft() in itk::Image
ENH: Updating ITKGenericLabelInterpolator remote module
ENH: Update ITKIOTransformDCMTK remote module
BUG: Factory registration should depend on ITK_BUILD_SHARED
COMP: Updating DCMTK compilation for Ninja
ENH: Update version of DCMTK to 3.6.1_20121012
ENH: Update SCIFIO to latest version on 10/25/2016
BUG: Swig and PCRE do not support space in installation paths
BUG: exit() call from within piped commands was not exiting the script
BUG: Typo in folder creation command
ENH: Only display message for transform registered multiple times in debug
ENH: Image spacing must be positive
BUG: Supported extensions by PNG IO were not added in constructor.
DOC: Documentation in itkRBGAPixel and itkRGBPixel was incorrect.
ENH: Update SCIFIO to lastest (2016.12.01)
ENH: FixedPointInverseDisplacementField moved to InsightSoftwareConsortium
COMP: Remove compilation warnings
ENH: Improved support of ccache and distcc
BUG: GPUImage regression due to API change.
ENH: Update Bridge Numpy (2016.12.05)
ENH: Update VariationalRegistration to remove warnings during compilation
ENH: FindPythonLibs does not support both debug and release
python libraries
ENH: Update VariationalRegistration
BUG: Missing ITK_TEMPLATE_EXPORT in forward declaration of itk::ImageBase
BUG: Missing ITK_TEMPLATE_EXPORT in itkOptimizerParametersHelper
BUG: Missing ITK_TEMPLATE_EXPORT in templated class
BUG: Remove linkage warnings on MacOS
BUG: HDF5 CMake installation directory variable had not been updated
BUG: Missing include header in AnisotropicDiffusionBLR remote
module hxx files
COMP: Silencing unused variable warning in itkTimeStamp
STYLE: Improve style checking by using module ITKKWStyleOverwrite.txt
COMP: OS*Barrier functions are deprecated on MacOS 10.12
GCC-XML Upstream (1):
ENH: pygccxml v1.8.0 (reduced)
Gert Wollny (1):
BUG: Relax vnl_complex floating point comparisons for i386
Gilles Filippini (1):
BUG: Use NATIVE_HBOOL for encoding HDF5 types.
HDF Group (1):
ENH: hdf5 1.8.17-r30218 (reduced)
Hans Johnson (23):
COMP: Use cmake WriteCompilerDetectionHeader
ENH: Use itk_compiler_detection versions
COMP: Need ITK_NOEXCEPT_OR_THROW macro.
COMP: Provide consistent granular C++11 support
STYLE: Use granular ITK_COMPILER_CXX_STATIC_ASSERT
STYLE: Prefer to use consistent definitions
COMP: Improve robustness of identifying the compiler standard used
BUG: try_compile for AlignAs were always failing
STYLE: Provide a well documented macro for repeated code
STYLE: Delete functions in consistent way
COMP: GPU baseclass ivars need to be protected
COMP: Remove unnecessary circular dependancy
COMP: Add long long usage for HDF5
COMP: Add long long usage for HDF5
STYLE: Prefer static small array to dynamic array
BUG: Confusing interface for FFTW wisdom files
STYLE: Output dimension from OutputImageType
STYLE: Code review style cleanups
STYLE: Prefer to use ITK AssertOrThrow macros
ENH: Add OverrideBoundaryCondition logic
ENH: Provide mechanism for enhanced NIFTI support
BUG: Use NIFTI sform/qform conventions correctly
ENH: Remove ambiguity about sform/qform
Hastings Greer (8):
BUG: ITK-3448 Wrap itkQuadEdgeCellTraitsInfo more specifically
BUG: make itkTriangleHelper instantiable to ease wrapping
BUG: remove lsqr because of license issues ITK 1160
BUG: make itkTriangleHelper instantiable to ease wrapping
BUG: initialize X to zero in lsmr Solve
BUG: Labled Point Set Registration: test multiple labels
BUG: Fix python wrapping of Cuberille remote module
BUG: Add test demonstrating Python global timestamp issue
Jean-Christophe Fillion-Robin (5):
STYLE: UseITK: Set ImageIO exceptions using new convention. See #3393
STYLE: MeshIO: Moves virtual destructor into cpp files. See #3393
STYLE: Update MeshIO factories to use RegisterFactoryInternal. See #3393
STYLE: MeshIO: Move MeshFileWriterException into its own file. See #3393
STYLE: MeshIO: Remove unused include from headers. See #3393
Johan Andruejol (3):
ENH: Add missing itkKernelFunctionBase wrapping
ENH: Add PrincipalComponentsAnalysis remote module
COMP: Override cannot be used with inline
Jon Haitz Legarreta (216):
ENH: Improve itkFlatStructutingElement coverage.
ENH: Improve itkPathToImageFilter class coverage.
ENH: Improve itkIsolatedWatershedImageFilter coverage.
ENH: Improve itkLogSigmoidTransferFunction coverage.
STYLE: Improve itkBSplineTransform doc style.
ENH: Improve GaborKernelFunctionCoverage.
PERF: Remove duplicate itkMath include
STYLE: Move the PrintSelf method to the end
STYLE: Improve the itkScalarToRGBColormapImageFilter style.
STYLE: Delete duplicate method documentation
STYLE: Remove method documentation from implementation file
STYLE: Improve GACLevelSet classes' style
STYLE: Improve test style
ENH: Improve itkGaussianDerivativeImageFilter coverage.
ENH: Improve the itkScalarToRGBColormapImageFilter coverage
STYLE: Improve itkScalarToRGBColormap test style
ENH: Improve GACLSImageFilter classes' coverage
STYLE: Improve comment style in GACLS tests
ENH: Improve itkImportImageFilter coverage
ENH: Improve itkVideoFileReader coverage
ENH: Improve itkVideoFileWriter coverage
STYLE: Improve the itkVideoFileWriter style.
STYLE: Imrpove itkVideoFileReader style.
ENH: Improve the itkBSplineControlPointImageFunction coverage
STYLE: Improve the itkIntensityWindowingImageFilter style
STYLE: Improve the itkIntensityWindowingImageFilter test style
ENH: Improve ImageToSpatialObjectRegistrationMethod coverage
STYLE: Improve test style
ENH: Improve MaskNeighborhoodOperatorImageFilter coverage
ENH: Improve itkMeshFileWriter coverage
ENH: Improve RescaleIntensityImageFilter coverage.
ENH: Improve itkClampImageFilter coverage.
BUG: Fix ivar type casting in PrintSelf.
STYLE: Improve MRIBiasFieldCorrectionFilter style.
ENH: Improve MRIBiasFieldCorrectionFilter coverage.
ENH: Improve itkIntensityWindowingImageFilter coverage
BUG: Fix Run-time type information in CSV module classes.
ENH: Improve the itkHistogram class code coverage.
DOC: Fix documentation typo.
STYLE: Improve the ImproveRescaleIntensityImageFilter style.
PERF: Make the itkVideoFileReader ivars private
PERF: Make itkVideoFileWriter ivars private
ENH: Improve coverage for itk::OrientImageFilter.
STYLE: Improve itk::OrientImageFilter class style.
ENH: Improve itkCSVNumericObjectFileWriter coverage.
ENH: Add missing standard class typdefs.
ENH: Improve itkVoronoiSegmentationImageFilter coverage.
ENH: Improve itkVoronoiSegmentationImageFilter style.
STYLE: Improve the MalahanobisDistanceThresholdImageFunction style.
ENH: Improve coverage for itkMalahanobisDistanceThreshold.
ENH: Improve itk::MinimumMaximumImageCalculator coverage.
ENH: Improve itkMinimumMaximumImageCalculator style.
BUG: Fix type mismatch in test.
STYLE: Improve itkPolylineMaskImagefilter style.
ENH: Improve itkPolylineMaskImageFilter coverage.
ENH: Improve itkFileListVideoStyle.
ENH: Improve itkLandmarkBasedTransformInitializer coverage.
ENH: Add baseline image to itkPolylineMaskImageFilter test.
ENH: Improve coverage for itkBSplineTransformInitializer.
STYLE: Improve itkBSplineTransformInitializer doc style.
ENH: Enhance itkBSplineTransformInitializer implementation.
DOC: Fix typo in method documentation.
ENH: Improve the itkRegularStepGradientDescentOptimizerv4 style.
STYLE: Improve the itkSimpleContourExtractorImageFilter style.
ENH: Exercise the class' Get methods.
ENH: Improve coverage for itkStatisticsOpeningLabelMapFilter.
ENH: Improve style for itkThresholdLabelerImageFilter.
ENH: Improve itkThresholdLabelerImageFilter coverage.
ENH: Get internal ImageIO via a const macro.
ENH: Improve the itkSimpleContourExtractorImageFilter coverage.
STYLE: Improve the itkMetaArray class style.
ENH: Improve MetaArrayReader/Writer coverages.
ENH: Improve the itkCovarianceImageFunction style.
STYLE: Improve itkVoronoiDiagram2DGenerator style.
ENH: Improve VoronoiDiagram2DGenerator coverage.
STYLE: Improve the itkBayesianClassifierImageFilter style.
STYLE: Improve the itkMetaArrayWriter style.
ENH: Improve itkCovarianteImageFunction coverage.
COMP: Fix signed/unsigned int comparison warning.
DOC: Improve itkGrayscaleDilateImageFilter documentation.
DOC: Improve documentation for itkGrayscaleErodeImageFilter.
DOC: Improve ConfigureHistogram method documentation.
STYLE: Improve the itkMovingHistogramMorphologyImagefilter style.
BUG: Fix Superclass name in RTTI.
STYLE: Improve itkGaussianInterpolateImageFunction style.
ENH: Improve coverage for itkGaussianInterpolateImageFunction.
ENH: Improve itkBayesianClassifierImageFilter coverage.
ENH: Add itkBSplineControlPointImageFilter RTTI.
STYLE: Improve itkBSplinecontrolPointImageFilter style.
ENH: Improve itkBSplineControlPointImageFilter coverage.
ENH: Improve coverage for itkRegularStepGradientDescentOptimizerv4.
STYLE: Improve the class implementation file style.
STYLE: Improve the itkResampleImageFilter style.
DOC: Fix typo in GetMTime method doc.
STYLE: Remove out-of-body implementation doc
ENH: Improve itkResampleImageFilter coverage.
ENH: Improve itkAbsImageAdaptor and Filter coverage.
BUG: Fix itkLSMImageIO class' Superclass name.
ENH: Improve the itkInterpolateImagePointsFilter coverage.
ENH: Improve itkPowImageFilter coverage.
BUG: Fix ConvolutionImageFilter RTTI.
STYLE: Use initialization lists.
STYLE: Improve BinaryFunctorImageFilter style.
ENH: Improve itkMinimumImageFilter code coverage.
BUG: Fix Linux-x86_64-gcc4.1 warning on implicit conversion.
ENH: Improve MaximumImageFilter coverage.
BUG: Fix conversion to PixelType conversion.
COMP: Fix double to unsigned char conversion warning.
ENH: Improve coverage for itkNormalizeToConstantImageFilter.
BUG: Fix itkSquaredDifferenceErrorFunction RTTI.
ENH: Improve itkMeanImageFunctionCoverage.
ENH: Improve itkSquareImageFilter coverage.
STYLE: Improve the itkSquaredDifferenceErrorFunction style.
STYLE: Enhance style for itkNormalizeToConstantImageFilter.
STYLE: Improve itkMeanImageFunction style.
ENH: Remove unnecesary call to filter print.
ENH: Improve itkRegionOfInterestImageFilter coverage.
STYLE: Improve itkRegionOfInterestImageFilter style.
STYLE: Improve itkPasteImageFilter style.
STYLE: Improve itkJoinSeriesImageFilter style.
BUG: Fix itkPadLabelMapFilter RTTI Superclass.
COMP: Address std::cout.precision conversion warning.
ENH: Improve itkBayesianClassifiertImageFilter coverage.
ENH: Improve itkPadLabelMapFilter coverage.
ENH: Improve itkJoinSeriesImageFilter coverage.
ENH: Improve the itkPasteImageFilter coverage.
ENH: Improve MeanImageFilter coverage.
COMP: Address std::cout.precision conversion warning.
ENH: Improve TernaryMagnitudeImageFilter coverage.
ENH: Improve FFTConvolutionImageFilter coverage.
DOC: Fix class documentation in ternary magnitude filters.
ENH: Improve ConstrainedValueDifferenceImageFilter coverage.
ENH: Improve AndImageFilter coverage.
ENH: Add baseline test to itkTernaryMagnitudeImageFilter.
ENH: Use MD5 comparison framework in baseline test.
ENH: Improve itk::VectorRescaleIntensityImageFilter coverage.
STYLE: Improve the itkVectorRescaleIntensityImageFilter style.
ENH: Print missing ivar in filter PrintSelf method.
ENH: Improve itkComplexToImaginaryFilter coverage.
ENH: Improve itkComplexToPhaseImageFilter coverage.
ENH: Improve itkComplexToModulusImageFilter coverage.
ENH: Improve itkComplexToRealImageFilter coverage.
ENH: Improve itkVectorResampleImageFilter coverage.
ENH: Add GetTransform method.
ENH: Improve itkConstrainedValueAdditionImageFilter coverage.
ENH: Improve itkModulusImageFilter coverage.
ENH: Improve itkLog10ImageFilter coverage.
ENH: Imporve itkMagnitudeAndPhaseToComplexImageFilter coverage.
ENH: Improve itkLogImageFilter coverage.
ENH: Improve itkInvertIntensityImageFilter coverage.
STYLE: Improve itkInvertIntensityImageFilter style.
DOC: Add missing doc to itkInvertIntensityImageFilter.
STYLE: Improve itkIntensityWindowingImageFilter style.
STYLE: Use initialization lists.
ENH: Improve itkIntensityWindowingImageFilter coverage.
ENH: Improve itkNaryMaximumImageFilter coverage.
COMP: Fix std::precision type casting warning.
ENH: Improve itkPointSetToPointSetRegistrationMethod coverage.
STYLE: Improve the itkPointSetToPointSetImageRegistrationMethod style.
ENH: Remove SmartPointers being explicitly initialized to null.
STYLE: Improve the itkPointSetToImageRegistrationMethod style.
ENH: Improve itkPointSetToImageRegistration coverage.
STYLE: Change the name of the itkPointSetToImageRegistrationMethod test.
STYLE: Improve itkVectorResampleImageFilter style.
STYLE: Improve the itkAntiAliasBinaryImageFilter style.
ENH: Improve trigonometric function filters' coverage.
STYLE: Remove test names from std::out messages.
ENH: Improve Boolean Algebra ImageFilters coverage.
STYLE: Improve the EuclideanDistancePointMetric style.
ENH: Improve itkSigmoidImageFilter coverage.
STYLE: Improve itkCropImageFilter style.
ENH: Improve itkCropImageFilter coverage.
ENH: Improve RGBToLuminanceImageFilter and Adaptor coverage.
ENH: Improve itkRescaleIntensityImageFilter coverage.
ENH: Improve the itkMatrixSelectionImageFilter coverage.
ENH: Improve itkTanImageFilter and Adaptor coverage.
ENH: Increase itkSqrtImageFilter and Adaptor coverage.
ENH: Increase itkTernaryOperatorImageFilter coverage.
ENH: Increase itkSymmetricEigenAnalysisImageFilter coverage.
STYLE: Improve itkScalarImagekmeansImageFilter style.
STYLE: Conform to TEST_SET_GET_VALUE definition.
BUG: Fix uninitialized variable due to dynamic analysis defect.
BUG: Fix uninitialized variable defect reported by valgrind.
ENH: Improve the itkPointSetToPointSetRegistrationTest.
ENH: Improve the itkPointSetToImageRegistrationTest.
ENH: Increas BinaryMagnitudeImageFilter coverage.
STYLE: Remove test name from std output.
ENH: Increase MagnitudeImageFilter coverage.
BUG: Fix uninitialized variable defect reported by valgrind.
BUG: Fix Superclass name in RTTI.
STYLE: Improve itkFrustumSpatialFunction style.
STYLE: Improve the itkConicShellInteriorExteriorSpatialFunction style.
BUG: Fix Superclass template argument list.
STYLE: Improve the itkTorusInteriorExteriorSpatialFunction style.
STYLE: Improve the itkCheckerBoardImageFilter class style.
ENH: Improve the itk::LabelVotingImageFilter coverage.
ENH: Improve itkCheckerBoardImageFilter coverage.
STYLE: Improve itk::LabelVotingImageFilter style.
STYLE: Improve the itkHoughTransform2DCirclesImageFilter style.
ENH: Add test for itk::FrustumSpatialFunction class.
ENH: Improve itkConnectedThresholdImageFilter coverage.
STYLE: Improve itkConnectedThresholdImageFilter style.
BUG: Fix FrustumSpatialFunction internal precision conversion.
COMP: Fix implicit conversion warning.
STYLE: Improve itkThresholdImageFilter style.
ENH: Add test for itk::TorusInteriorExteriorSpatialFunction.
BUG: Fix Superclass template argument list.
ENH: Improve itkUnsharpMaskingImageFilter implementation.
ENH: Improve the itkUnsharpMaskingImageFilter coverage.
ENH: Fix UnsharpMaskingImageFilter test inconsistencies.
BUG: Add missing itkTypeMacro.
DOC: Document the member variables.
BUG: Fix the itkImageSource RTTI class name,
STYLE: Improve itkLabelImageGaussianInterpolateImageFunction style.
ENH: Finish itkGaussianInterpolateImageFunction PrintSelf.
STYLE: Improve itkLabelOverlapMeasurementImageFilter style.
KWSys Robot (6):
KWSys 2016-06-30 (96f06c8e)
KWSys 2016-10-23 (b630d2f5)
KWSys 2016-11-03 (37306a1c)
KWSys 2016-11-08 (2b3e2b1c)
KWSys 2016-11-09 (18c65411)
KWSys 2016-11-21 (cb55cf5a)
Maeliss Jallais (1):
BUG: Add unsigned and signed short to the wrapping of vnl_matrix
Matthew McCormick (85):
PERF: Simplify HilbertPath numberOfPathVertices computation.
BUG: CID 1355469 NNetClassifierTest4 unintended integer division.
BUG: Update Cuberille Remote for version check fix.
ENH: Bump ITK version to 4.11.0.
BUG: Fix HDF5ImageIO type information.
BUG: Fix H5File memory leak in HDF5ImageIO.
DOC: Collect Francois Budin's contributions in .mailmap
BUG: Limit WRAP_ITK_MODULES when building externally
STYLE: Improvements to ResourceProbe report output.
ENH: Add a useTabs argument to ResourceProbe::Report.
ENH: Add standard error measure to the ResourceProbe
ENH: Add itk_python_add_test function.
BUG: Remove VNL file from subtree merge.
COMP: Fix wrapping with a space in the Python include path
BUG: Fix PermuteAxesImageFilter pipeline method visibility
BUG: Initialize PermuteOrder and FlipAxes in OrientImageFilter
BUG: ResampleImageFilter honor isInside output of the transform method
COMP: Avoid recursive include of itkMath.h
COMP: Fix VXL header installation locations
BUG: ClampImageFilterTest for older GCC, InPlaceOn
DOC: Add CONTRIBUTING.md file to the top level.
COMP: Update VariationalRegistration to address Doxygen warnings
BUG: Compiler detections file installed into ITK build tree location
COMP: Do not use string(TIMESTAMP.
COMP: Remove HDF5 -std=c99 for C++ files
BUG: Do not build HDF5 static library with a shared build
ENH: Add PerformanceBenchmarking Remote Module
COMP: Remove duplicate wrappings for ResampleImageFilter
BUG: Put Python test output files in the build tree
BUG: Improve HDF5ImageIO::CloseDataSet name
COMP: Use add_python_test PythonLazyLoadingImage
COMP: Address missing override it itkFactoryTestLib.cxx
BUG: Index,Size,Offset constructors present in Python with C++11
COMP: Address missing override it itkFactoryTestLib.cxx
BUG: PerformanceBenchmarking as EXCLUDE_FROM_DEFAULT
ENH: Bump SetupForDevelopment version
BUG: Add missing ZLib deflate support to HDF5
BUG: Address memory leak, remove NumPy build dep in BridgeNumPy
COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory
COMP: Do not set ITK_LIBRARY_BUILD_TYPE in ITKTransformFactory
BUG: Check when ITK_WRAP_VECTOR_COMPONENTS doesn't include
ITK_WRAP_IMAGE_DIMS
BUG: RichardsonLucyDeconvolutionImageFilter with non-null input
Image Origin
BUG: Fix inconsistent Twister start with Initialize(seed) and SetSeed(seed)
BUG: Do not hard code CMake scripts in HDF5
COMP: Workaround Emscripten ITKCommon test build failure
COMP: Do embed fancy HDF5 libsettings with Emscripten
COMP: Add missing H5T_patch_vlen_file declaration
ENH: Bump CastXML to 2016-10-11 master.
COMP: Workaround Emscripten ITKCommon test build failure
BUG: Swap CastXML hashes for Mac OSX and Windows
ENH: Sync ExternalData.cmake with upstream CMake 3.6.2
COMP: Fix VNL tests when cross-compiling
ENH: ExternalData multi-algorithm support
ENH: ExternalData support for data.kitware.com
BUG: Install missing H5pubconf.h
BUG: Use SpacePrecisionType in TileImageFilter
BUG: Use internal ExternalData_Add_Target
ENH: Run .sha512, .md5 simultaneous modification pre-commit check
BUG: Correct CastXML Windows binary
BUG: Support non-zero Index in LevelSetNeighborhoodExtractor
ENH: Add ArchiveTestingDataOnGirder.py
BUG: Correct AtanRegularizationHeavisideStepFunction derivative
ENH: Add Utilities/Maintenance/ContentLinkSynchronization.sh
BUG: Remove extra HessianToObjectness content links
ENH: Wrap SpatialFunction float types with ITK_WRAP_float
BUG: Bump PerformanceBenchmarking to 2016-11-04
BUG: itk_python_expression_add_test too many quotes.
ENH: Wrap VectorImage with complex real pixel types
ENH: Bump PerformanceBenchmarking to 2016-11-07
BUG: Do not assume zero Index in ReinitializeLevelSetImageFilter
ENH: Create itk_module_add_library macro
BUG: Update computeCodeCoverageLocally.sh for KWStyle addition
COMP: Install a newer version of CMake on CircleCI
ENH: Use GitHub Pages as the first ExternalData resource
ENH: Add tests to demonstrate OSX dynamic_cast failure
BUG: Use random seed with for MersenneTwisterRandomVariateGenerator.
BUG: Enable program global timestamp
BUG: Set random number seed in Mattes metric test
BUG: Notify builder that ITK_DYNAMIC_LOADING is required with wrapping
BUG: Define ITK_DYNAMIC_LOADING before ITK_WRAP_PYTHON
BUG: Set random number seed mutual information metric tests
BUG: Wrap std::vector< itk.Point >
BUG: Fix wrapping of LandmarkBasedTransformInitializer
BUG: Rename UnsharpMaskingImageFilter to UnsharpMaskImageFilter
DOC: Add Dženan Zukić to .mailmap
Max Smolens (4):
COMP: CID-1266557 StatisticsLabelMapFilter uninitialized scalar field
BUG: CID-1355438 QuadEdgeTest1 resource leaks
COMP: CID-1355472 MIRegistrationFunction unused value
COMP: Fix link errors for VNL template instantiations on Windows
Mayeul Chassagnard (7):
BUG: Test added and error fixed in HDF5ImageIO
ENH: Update add_library TO itk_module_add_library
COMP: Set Policy CMP0023 target_link_libraries for
Modules/ThirdParty/VNLI...
BUG: Add ITK_TEMPLATE_EXPORT to template classes
BUG: Fix errors linked to dyn_cast merge
BUG: Restore old ITKModule_TEMPLATE_EXPORT specification for classes
BUG: dash3win7 dashboard build error unresolved external symbol
Michka Popoff (3):
ENH: Update UpdatepygccxmlFromUpstream.sh for v1.8.0
ENH: Update igenerator.py for pygccxml v1.8.0
COMP: Use pygccxml's public API for apply definitions
Pierre Barbier de Reuille (2):
COMP: Fix function naming error when using FFTWD
COMP: Fix function naming error when using FFTWD
Sean McBride (1):
COMP: Bypass HDF5 bugs under TSan
Simon Rit (2):
COMP: remove C++11 compiler warning for CUDA compilations
COMP: remove C++11 compiler warning for CUDA compilations
Somesh Kashyap (2):
BUG: Override TransformCategoryType for
AzimuthElevationToCartesianTransform
BUG: -Added test case for itkAzimuthElevationToCartesianTransform
Sumedha Singla (1):
ENH: Updated the git tag for ITK-Minimal-Path-Extraction remote module
Taylor Braun-Jones (4):
COMP: Skip path length checks if ITK_SKIP_PATH_LENGTH_CHECKS is enabled
COMP: Fix truncation from double to float warning
DOC: Fix incorrect itkFactorylessNewMacro documentation
COMP: Only include the headers for required OpenCV modules
Thien Nguyen (1):
PERF: SmapsFileParser unnecessary dynamic_cast
VXL Maintainers (4):
VNL 2016-05-15 (14f97ab4)
VNL 2016-06-22 (23a93adb)
VNL 2016-06-29 (d62a2d70)
VNL 2016-07-06 (acfa62cc)
Vladimir S. FONOV (1):
COMP: Build against GCC 5.3.1
Zach Williamson (2):
ENH: Update Remote Module Tags
BUG: Fix Python Wrappings in C++11
Ziv Yaniv (1):
BUG: Metric sampling percentage accepted values outside (0.0, 1.0].
ITK Software Guide Changes
----------------------------------------
Matt McCormick (8):
DOC: Move the location for obtaining the software
DOC: Remove reference to ITKApps
ENH: Bump ITK ExternalProject version to 2016-11-02 master
DOC: Document the ITK module registry
ENH: Bump ITK ExternalProject version to v4.11rc01 master
DOC: Update CMake hyperlinks
DOC: Update minimum required CMake version to 2.8.9
DOC: Add section on static and shared libraries.
ITK Sphinx Examples Changes
-------------------------------------------
Matt McCormick (6):
BUG: Use GDCM ITK module name
ENH: Rename ReadDICOMSeriesAndWrite3DImage
BUG: Add tests for ReadDICOMSeriesAndWrite3DImage
ENH: Bump ITK Superbuild version to 2016-09-20 master
ENH: Add Python version of ReadDICOMSeriesAndWrite3DImage
ENH: Add Python version of CreateAnRGBImage
Michka Popoff (5):
ENH: Use same Python interpreter as ITK for wrapping tests
BUG: Fix ResampleAnImage example (Python3)
ENH: Add Python example for ApplyAFilterOnlyToASpecifiedRegionOfAnImage
ENH: Add 7 Python examples to Core/Common
ENH: Add BoundingBoxOfAPointSet Python example
-----------------------------------------------------
Errors or omissions? Please fix them here:
https://docs.google.com/document/d/1UQAh7_mDjps0GZYX62biTwFrA54KRvf__4oeT0ymzZg/edit
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